FANTOM 4 | Data

DATA Citation: Please cite the following paper when you use the data here, in addition to the relevant papers. Kawaji H, Severin J, Lizio M, Forrest AR, van Nimwegen E, Rehli M, Schroder K, Irvine K, Suzuki H, Carninci P, Hayashizaki Y, Daub CO. , "Update of the FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation.", Nucleic Acids Res. 2010 Nov 12. Kawaji H, Severin JM, Lizio M, Waterhouse AM, Katayama S, Irvine KM, Hume DA, Forrest ARR, Suzuki H, Carninci P, Hayashizaki Y, Daub CO., "The FANTOM Web Resource: from mammalian transcriptional landscape to its dynamic regulation", Genome Biology. 2009, 10:R40 Updates: Sep 21th, 2010: ChIP-chip for IRF8 (rep1,rep2) have been added based on Mol Immunol. 2010 Aug;47(14):2295-302 Sep 17th, 2010: PPI and qRT-PCR for human and mouse have been added based on Cell 140(5):744-752 Sep 7th, 2010: Regulatory interactions (manually curated, experimentally validated, and computationally predicted ones) are exported from the FANTOM4 eeDB (EdgeExpressDB) Sep 7th, 2010: Data for FANTOM4 custom tracks of UCSC has been added Aug 19th, 2010: GFF files of Array CGH has been added April 19th, 2009: The first release of the data files.
CAGE [HUMAN] [MOUSE]	CAGE tags, mapping, and promoters (clusters or aggregations of CAGE tags as units of promoter) for human and mouse. Please find Meta-data for comprehensive information.
Tables	Raw and processed data files used in the FANTOM4 collaboration, which includes the CAGE data mentioned above. Plase find readme file at first.
Meta-data	Information about the experiments and data processing, including CAGE, microarray, ChIP-chip, etc. It is described in MAGE-TAB / ISA-TAB format. Its graphical representations generated by SDRF2GRAPH are also available.
Genome Browser	GFF files used in the genome browser. Custom tracks on the UCSC Genome Browser are also available.
Supplemental Materials	Supplemental materials of individual publications.
tf-ppi	Mammarian atlas combinatorial transcriptional requlation.


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