FFCP PHASE1:Hg19::chr12:66218212..66218244,+
From FANTOM5_SSTAR
Jump to: navigation, search
| Short description: | p5@HMGA2 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_5_at_HMGA2_5end |
| Coexpression cluster: | C749_Wilms_rhabdomyosarcoma_medulloblastoma_fibrous_retinoblastoma_endometrial_schwannoma |
| Association with transcript: | 0bp_to_ENST00000354636, ENST00000393578, ENST00000425208, ENST00000536545, ENST00000537275, ENST00000537429, NM_003483, NM_003484, uc001sss.1, uc001sst.1, uc001ssu.1, uc001ssv.2, uc001ssw.1, uc001ssx.2, uc010ssv.1_5end |
| EntrezGene: | HMGA2 |
| HGNC: | 5009 |
| UniProt: | Q1M182Q1M188Q1M186F5H6H0Q1M187Q1M185P52926 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p5@HMGA2 |
|---|
0
20
40
60
80
100
120
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| embryonic cell | 1.04e-26 | 250 |
| muscle precursor cell | 1.91e-14 | 58 |
| myoblast | 1.91e-14 | 58 |
| multi-potent skeletal muscle stem cell | 1.91e-14 | 58 |
| electrically responsive cell | 2.73e-14 | 61 |
| electrically active cell | 2.73e-14 | 61 |
| muscle cell | 2.29e-13 | 55 |
| mesodermal cell | 3.21e-13 | 121 |
| epithelial cell | 3.67e-13 | 253 |
| smooth muscle cell | 6.32e-10 | 43 |
Showing 1 to 10 of 16 entries
| Ontology term | p-value | n |
|---|---|---|
| unilaminar epithelium | 1.17e-17 | 148 |
| multilaminar epithelium | 4.98e-17 | 83 |
| epithelial vesicle | 7.30e-16 | 78 |
| cell layer | 2.05e-15 | 309 |
| epithelial tube | 3.60e-15 | 117 |
| mesenchyme | 6.22e-15 | 160 |
| entire embryonic mesenchyme | 6.22e-15 | 160 |
| epithelium | 2.24e-14 | 306 |
| vasculature | 2.43e-14 | 78 |
| vascular system | 2.43e-14 | 78 |
Showing 1 to 10 of 64 entries
