Template:NonRedundantMotifRender

Name:	{{{name}}}
Species:	{{{sample_species}}}
Genomic View:	zenbu , UCSC

Homer de novo Motif Results for CNhs10632_vs_median_8-fold_up-300+50merged

P-value threshold: 1e-15
Matrix similarity threshold: 0.75
Information content threshold: 1.5
Minimum target frequency: 50
Minimum background percentage: -1
Total target sequences = 5327
Total background sequences = 43180

Rank	Motif	Enrichment and P-value (ln(P-value))	Best Match/Details and Motif File
1		9.14% Targets 1.14% Backgr. P < 1e-264 (-6.092e+02)	JUN.p2.SwissRegulon.nucfreq More Info/Top 5 Known Motifs Motif File (PWM)
2		11.38% Targets 2.45% Backgr. P < 1e-209 (-4.824e+02)	SOX10_si_HM09 More Info/Top 5 Known Motifs Motif File (PWM)
3		7.12% Targets 1.28% Backgr. P < 1e-153 (-3.526e+02)	RFX1..5_RFXANK_RFXAP.p2.SwissRegulon.nucfreq More Info/Top 5 Known Motifs Motif File (PWM)
4		14.68% Targets 5.34% Backgr. P < 1e-140 (-3.229e+02)	CREB1_f1_HM09 More Info/Top 5 Known Motifs Motif File (PWM)
5		60.12% Targets 44.92% Backgr. P < 1e-109 (-2.510e+02)	NFYA_f1_HM09 More Info/Top 5 Known Motifs Motif File (PWM)
6		14.49% Targets 6.31% Backgr. P < 1e-99 (-2.296e+02)	BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer More Info/Top 5 Known Motifs Motif File (PWM)
7		26.46% Targets 15.18% Backgr. P < 1e-98 (-2.277e+02)	E4F1_f1_HM09 More Info/Top 5 Known Motifs Motif File (PWM)
8		15.02% Targets 7.77% Backgr. P < 1e-69 (-1.602e+02)	RFX1_f1_HM09 More Info/Top 5 Known Motifs Motif File (PWM)
9		25.03% Targets 15.74% Backgr. P < 1e-67 (-1.553e+02)	SP1_f1_HM09 More Info/Top 5 Known Motifs Motif File (PWM)
10		5.73% Targets 2.01% Backgr. P < 1e-55 (-1.284e+02)	ATF1_si_HM09 More Info/Top 5 Known Motifs Motif File (PWM)
11		5.88% Targets 2.10% Backgr. P < 1e-55 (-1.280e+02)	NFYB_f1_HM09 More Info/Top 5 Known Motifs Motif File (PWM)
12		11.43% Targets 5.88% Backgr. P < 1e-52 (-1.214e+02)	NRF1(NRF)/MCF7-NRF1-ChIP-Seq/Homer More Info/Top 5 Known Motifs Motif File (PWM)
13		14.31% Targets 8.32% Backgr. P < 1e-47 (-1.083e+02)	ATF5_CREB3.p2.SwissRegulon.nucfreq More Info/Top 5 Known Motifs Motif File (PWM)
14		4.98% Targets 1.78% Backgr. P < 1e-46 (-1.081e+02)	RFX2_f1_HM09 More Info/Top 5 Known Motifs Motif File (PWM)
15		65.83% Targets 56.15% Backgr. P < 1e-46 (-1.070e+02)	MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer More Info/Top 5 Known Motifs Motif File (PWM)
16		5.01% Targets 1.87% Backgr. P < 1e-44 (-1.018e+02)	Rfx1(HTH)/NPC-Rfx1-ChIP-Seq/Homer More Info/Top 5 Known Motifs Motif File (PWM)
17		45.42% Targets 36.08% Backgr. P < 1e-43 (-1.010e+02)	ATF3_f1_HM09 More Info/Top 5 Known Motifs Motif File (PWM)
18		3.57% Targets 1.10% Backgr. P < 1e-41 (-9.658e+01)	ATF2.p2.SwissRegulon.nucfreq More Info/Top 5 Known Motifs Motif File (PWM)
19		42.47% Targets 33.66% Backgr. P < 1e-40 (-9.269e+01)	PRDM14(Zf)/H1-PRDM14-ChIP-Seq/Homer More Info/Top 5 Known Motifs Motif File (PWM)
20		13.91% Targets 8.44% Backgr. P < 1e-39 (-9.111e+01)	ELK1_f1_HM09 More Info/Top 5 Known Motifs Motif File (PWM)
21		8.04% Targets 4.06% Backgr. P < 1e-38 (-8.841e+01)	MYB.p2.SwissRegulon.nucfreq More Info/Top 5 Known Motifs Motif File (PWM)
22		43.56% Targets 35.32% Backgr. P < 1e-34 (-8.012e+01)	E2F5_do_HM09 More Info/Top 5 Known Motifs Motif File (PWM)
23		51.05% Targets 42.61% Backgr. P < 1e-34 (-8.003e+01)	CDX1_f1_HM09 More Info/Top 5 Known Motifs Motif File (PWM)
24		29.05% Targets 22.01% Backgr. P < 1e-32 (-7.498e+01)	ELF1(ETS)/Jurkat-ELF1-ChIP-Seq/Homer More Info/Top 5 Known Motifs Motif File (PWM)
25		4.41% Targets 1.84% Backgr. P < 1e-31 (-7.364e+01)	BATF_si_HM09 More Info/Top 5 Known Motifs Motif File (PWM)
26		9.31% Targets 5.37% Backgr. P < 1e-30 (-7.093e+01)	MAFG_si_HM09 More Info/Top 5 Known Motifs Motif File (PWM)
27		24.69% Targets 18.41% Backgr. P < 1e-29 (-6.805e+01)	HBP1_HMGB_SSRP1_UBTF.p2.SwissRegulon.nucfreq More Info/Top 5 Known Motifs Motif File (PWM)
28		25.03% Targets 18.78% Backgr. P < 1e-28 (-6.643e+01)	BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer More Info/Top 5 Known Motifs Motif File (PWM)
29		18.64% Targets 13.45% Backgr. P < 1e-25 (-5.925e+01)	ZBTB33/GM12878-ZBTB33-ChIP-Seq/Homer More Info/Top 5 Known Motifs Motif File (PWM)
30		25.25% Targets 19.53% Backgr. P < 1e-23 (-5.516e+01)	E2F(E2F)/Cell-Cycle-Exp/Homer More Info/Top 5 Known Motifs Motif File (PWM)
31		22.64% Targets 17.33% Backgr. P < 1e-22 (-5.185e+01)	MYB_f1_HM09 More Info/Top 5 Known Motifs Motif File (PWM)
32		48.33% Targets 41.62% Backgr. P < 1e-22 (-5.177e+01)	SPIB.p2.SwissRegulon.nucfreq More Info/Top 5 Known Motifs Motif File (PWM)
33		5.91% Targets 3.25% Backgr. P < 1e-22 (-5.162e+01)	MYB.p2.SwissRegulon.nucfreq More Info/Top 5 Known Motifs Motif File (PWM)
34		1.69% Targets 0.49% Backgr. P < 1e-22 (-5.087e+01)	HSF2_si_HM09 More Info/Top 5 Known Motifs Motif File (PWM)
35		87.66% Targets 82.97% Backgr. P < 1e-20 (-4.812e+01)	Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq/Homer More Info/Top 5 Known Motifs Motif File (PWM)
36		12.20% Targets 8.41% Backgr. P < 1e-20 (-4.724e+01)	NRF1.p2.SwissRegulon.nucfreq More Info/Top 5 Known Motifs Motif File (PWM)
37		49.36% Targets 42.96% Backgr. P < 1e-20 (-4.723e+01)	TGIF1_f1_HM09 More Info/Top 5 Known Motifs Motif File (PWM)
38		1.88% Targets 0.62% Backgr. P < 1e-20 (-4.671e+01)	CREB1_f1_HM09 More Info/Top 5 Known Motifs Motif File (PWM)
39		3.76% Targets 1.81% Backgr. P < 1e-20 (-4.632e+01)	ETS:E-box/HPC7-Scl-ChIP-Seq/Homer More Info/Top 5 Known Motifs Motif File (PWM)
40		13.67% Targets 9.71% Backgr. P < 1e-19 (-4.582e+01)	PRGR_f1_HM09 More Info/Top 5 Known Motifs Motif File (PWM)
41		9.01% Targets 5.88% Backgr. P < 1e-19 (-4.403e+01)	ZBT7B_si_HM09 More Info/Top 5 Known Motifs Motif File (PWM)
42		50.54% Targets 44.43% Backgr. P < 1e-18 (-4.313e+01)	TBP.p2.SwissRegulon.nucfreq More Info/Top 5 Known Motifs Motif File (PWM)
43		3.32% Targets 1.60% Backgr. P < 1e-18 (-4.160e+01)	ELF1(ETS)/Jurkat-ELF1-ChIP-Seq/Homer More Info/Top 5 Known Motifs Motif File (PWM)
44		59.59% Targets 53.74% Backgr. P < 1e-17 (-4.004e+01)	ISL1_f1_HM09 More Info/Top 5 Known Motifs Motif File (PWM)
45		5.43% Targets 3.16% Backgr. P < 1e-17 (-3.975e+01)	SRBP2_f1_HM09 More Info/Top 5 Known Motifs Motif File (PWM)
46		2.97% Targets 1.41% Backgr. P < 1e-16 (-3.816e+01)	NFY{A,B,C}.p2.SwissRegulon.nucfreq More Info/Top 5 Known Motifs Motif File (PWM)

Details

Transcriptome profiling

hCAGE	{{{profile_hcage}}}
RNA-seq	{{{profile_rnaseq}}}
smallRNA seq	{{{profile_srnaseq}}}
nanoCAGEscan	{{{profile_cagescan}}}

Sample info

strain	{{{sample_strain}}}
tissue	{{{sample_tissue}}}
dev_stage	{{{sample_dev_stage}}}
sex	{{{sample_sex}}}
age	{{{sample_age}}}
ethnicity	{{{sample_ethnicity}}}
cell_type	{{{sample_cell_type}}}
cell_line	{{{sample_cell_line}}}
collaboration	{{{sample_collaboration}}}
Experimental condition	{{{sample_experimental_condition}}}
disease	{{{sample_disease}}}
cell_lot	{{{sample_cell_lot}}}
cell_catalog	{{{sample_cell_catalog}}}
company	{{{sample_company}}}
donor(cell lot)	{{{sample_donor(cell lot)}}}
Note	{{{sample_note}}}

RNA info

sample_id	{{{sample_id}}}
tube_id	{{{rna_tube_id}}}
box	{{{rna_box}}}
position	{{{rna_position}}}
lot_number	{{{rna_lot_number}}}
catalog_number	{{{rna_catalog_number}}}
RIN	{{{rna_rin}}}
OD260/230	{{{rna_od260/230}}}
OD260/280	{{{rna_od260/280}}}
sample_type	{{{rna_sample_type}}}
extraction_protocol	{{{rna_extraction_protocol}}}
weight_ug	{{{rna_weight_ug}}}
concentration	{{{rna_concentration}}}

Parent ontology

is_a relathionship
{{{is_a}}}

part_of relathionship
{{{part_of}}}

has_quality relathionship
{{{has_quality}}}

Ancestors in FF ontology

Anatomy	Cell type	Disease
UBERON:	CL:	Property "Ancestors in disease facet" (as page type) with input value "{{{ancestors_in_disease_facet}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.DOID: