DOID:3095: Difference between revisions
From FANTOM5_SSTAR
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|id=DOID:3095
|name=germ cell and embryonal cancer
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|def="A germ cell cancer that is derived_from a mixture of germs cells and embryonal cells." [url:htt...") |
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|id=DOID:3095 | |id=DOID:3095 | ||
|name=germ cell and embryonal cancer | |name=germ cell and embryonal cancer | ||
|namespace= | |namespace=disease_ontology | ||
|def="A germ cell cancer that is derived_from a mixture of germs cells and embryonal cells." [url:http\://en.wikipedia.org/wiki/Germ_cell] | |def="A germ cell cancer that is derived_from a mixture of germs cells and embryonal cells." [url:http\://en.wikipedia.org/wiki/Germ_cell] | ||
|xref= | |xref=MSH:D009373;;UMLS_CUI:C0027658 | ||
|is_a=DOID:2994 | |is_a=DOID:2994 | ||
|synonym="germ cell and embryonal neoplasm" RELATED [] | |synonym="germ cell and embryonal neoplasm" RELATED [] | ||
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|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo | |||
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Revision as of 14:00, 11 June 2012
Name: | germ cell and embryonal cancer | ||
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Namespace: | disease_ontology | ||
Definition: | "A germ cell cancer that is derived_from a mixture of germs cells and embryonal cells." [url:http\://en.wikipedia.org/wiki/Germ_cell] | ||
Xrefs: |
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Synonyms: | "germ cell and embryonal neoplasm" RELATED [] |
Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | DOID:2994(germ cell cancer) |
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Children
is a: | FF:10590-108D5 (testicular germ cell embryonal carcinoma cell line:NEC8),FF:10591-108D6 (testicular germ cell embryonal carcinoma cell line:NEC14),FF:10593-108D8 (testicular germ cell embryonal carcinoma cell line:NEC15),FF:10786-110H3 (testicular germ cell embryonal carcinoma cell line:ITO-II),DOID:171 (neuroectodermal tumor),DOID:3307 (teratoma) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
Human (Homo sapiens)
- 10423-106C9 (choriocarcinoma cell line:BeWo)
- 10458-106G8
- 10460-106H1
- 10461-106H2
- 10480-107A3
- 10507-107D3
- 10508-107D4 (neuroblastoma cell line:CHP-134)
- 10538-107G7
- 10539-107G8 (neuroblastoma cell line:NB-1)
- 10554-107I5
... further results Mouse (Mus musculus)
- 10423-106C9 (choriocarcinoma cell line:BeWo)
- 10458-106G8
- 10460-106H1
- 10461-106H2
- 10480-107A3
- 10507-107D3
- 10508-107D4 (neuroblastoma cell line:CHP-134)
- 10538-107G7
- 10539-107G8 (neuroblastoma cell line:NB-1)
- 10554-107I5
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3095 (germ cell and embryonal cancer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data