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Revision as of 17:08, 15 June 2012

Name:duct
Definition:"A tube shaped portion of tissue lined with epithelial cells that collects secretions and routes them to their destination[ZFA]." [Wikipedia:Duct_(anatomy), ZFA:0005171]
Xrefs:
links:

FMA:30320
galen:Duct
ncithesaurus:Duct
XAO:0004000

ZFA:0005171
Synonyms: "anatomical duct" EXACT []
"exocrine duct" RELATED []
"exocrine gland duct" RELATED []
Comments:TODO - make distinctions between duct and tube clearer. Single layer of cells vs multiples? Function (e.g. exocrine gland duct?). Different ontologies use it in different ways
Subset: vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0004111(anatomical conduit)



Children

is a:UBERON:0002173 (alveolar duct),UBERON:0003928 (digestive system duct),UBERON:0005904 (duct of male reproductive system),UBERON:0006553 (renal duct),UBERON:0014716 (interlobular duct),FF:10489-107B3 (),FF:10515-107E2 ()
part of:CL:0000068 (duct epithelial cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000058 (duct), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data