UBERON:0001737: Difference between revisions
From FANTOM5_SSTAR
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|id=UBERON:0001737
|name=larynx
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|def="Heterogeneous cluster that connects the pharynx to the tracheobronchial tree[FMA]." [FMA:55097, Wikipedia:Larynx...") |
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|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
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Revision as of 17:13, 15 June 2012
| Name: | larynx | |
|---|---|---|
| Definition: | "Heterogeneous cluster that connects the pharynx to the tracheobronchial tree[FMA]." [FMA:55097, Wikipedia:Larynx] | |
| Xrefs: |
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| Comments: | This class was created automatically from a combination of ontologies | |
| Alt_id: | UBERON:FMA_55097-MA_0000414-MIAA_0000187-XAO_0003081 | |
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000077(mixed endoderm/mesoderm-derived structure),UBERON:0000477(anatomical cluster) |
|---|---|
| develops_from: | UBERON:0008947(respiratory primordium) |
| part_of: | UBERON:0001557(upper respiratory tract) |
Children
| derives from: | FF:0104978 (HEp-2 cell sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11890-125D9 (Hep-2 cells treated with Streptococci strain 5448, biol_rep1)
- 11891-125E1 (Hep-2 cells treated with Streptococci strain 5448, biol_rep2)
- 11892-125E2 (Hep-2 cells treated with Streptococci strain 5448, biol_rep3)
- 11893-125E3
- 11894-125E4 (Hep-2 cells treated with Streptococci strain JRS4, biol_rep1)
- 11895-125E5 (Hep-2 cells treated with Streptococci strain JRS4, biol_rep2)
- 11896-125E6 (Hep-2 cells treated with Streptococci strain JRS4, biol_rep3)
- 11897-125E7
- 11898-125E8 (Hep-2 cells mock treated, biol_rep1)
- 11899-125E9 (Hep-2 cells mock treated, biol_rep2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001737 (larynx), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
