UBERON:0001828: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0001828
|name=gingiva
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|def="The gingiva, or gums, consists of the mucosal tissue that lies over the alveolar bone. [WP,unvetted]." [Wikiped...") |
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|part_of=UBERON:0000166 | |part_of=UBERON:0000166 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
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Revision as of 17:13, 15 June 2012
| Name: | gingiva | ||
|---|---|---|---|
| Definition: | "The gingiva, or gums, consists of the mucosal tissue that lies over the alveolar bone. [WP,unvetted]." [Wikipedia:Gingiva] | ||
| Xrefs: |
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| Synonyms: |
"gum" EXACT [FMA:59762] "gum tissue" EXACT [UBERON:cjm] | ||
| Comments: | This class was created automatically from a combination of ontologies | ||
| Alt_id: | UBERON:FMA_59762-MA_0000342 | ||
| Subset: | uberon_slim |
200px-Tooth_Section.svg.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000064(organ part),UBERON:0004119(endoderm-derived structure),UBERON:0004121(ectoderm-derived structure) |
|---|---|
| part_of: | UBERON:0000166(oral opening) |
Children
| part of: | UBERON:0001949 (gingival epithelium),CL:0002552 (fibroblast of gingiva) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11221-116B6 (Gingival epithelial cells, donor1 (GEA11))
- 11222-116B7 (Fibroblast - Gingival, donor4 (GFH2))
- 11237-116D4 (Fibroblast - Gingival, donor1)
- 11302-117B6 (Gingival epithelial cells, donor2 (GEA14))
- 11303-117B7 (Fibroblast - Gingival, donor5 (GFH3))
- 11318-117D4 (Fibroblast - Gingival, donor2)
- 11379-118B2 (Gingival epithelial cells, donor3 (GEA15))
- 11394-118C8 (Fibroblast - Gingival, donor3)
- 11921-125H4 (Fibroblast - Gingival, donor6 (aggressive periodontitis))
- 11922-125H5 (Fibroblast - Gingival, donor6 (control))
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001828 (gingiva), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
