UBERON:0002421: Difference between revisions
From FANTOM5_SSTAR
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|id=UBERON:0002421
|name=hippocampal formation
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|def="Hippocampus (proper) plus dentate gyrus and subiculum[definition derived from NIF comments and on...") |
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Revision as of 17:16, 15 June 2012
| Name: | hippocampal formation | ||
|---|---|---|---|
| Definition: | "Hippocampus (proper) plus dentate gyrus and subiculum[definition derived from NIF comments and ontology alignment]." [UBERON:cjm] | ||
| Xrefs: |
| ||
| Synonyms: |
"archipallium" RELATED [MA:0000189] "hippocampus" NARROW [BTO:0000601, GO:0021766] "hippocampus (crosby)" EXACT [] "major hippocampus" RELATED [BTO:0000601] "primal cortex" RELATED [MA:0000189] | ||
| Comments: | The term hippocampus is often used synonymously with hippocampal formation which consists of the hippocampus proper or Cornu Ammonis, the dentate gyrus and the subiculum[NIF]. BTO:0000601 is placed here since it includes the DG. GO also includes dentate gyrus development as part of hippocampus development, so we assume when GO says "hippocampus" it means "hippocampal formation". In ABA HPF = (.. subiculum) + HIP, HIP = DG + AH. | ||
| Alt_id: | UBERON:MA_0000189-FMA_74038 | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000477(anatomical cluster),UBERON:0004121(ectoderm-derived structure) |
|---|---|
| part_of: | UBERON:0000203(pallium),UBERON:0001893(telencephalon) |
Children
| part of: | FF:0000197 (mouse astrocyte of hippocampus sample),UBERON:0001954 (Ammon's horn),FF:0010153 (hippocampus - adult sample),FF:0011391 (mouse hippocampus- neonate N00 sample),FF:13-16E8 (hippocampus, adult),FF:627-43G1 (hippocampus, neonate N00) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10153-102I9 (hippocampus, adult, donor10252)
- 10169-103B7 (hippocampus - adult, donor10196)
- 10363-105F3 (hippocampus, newborn, donor10223)
- 10374-105G5 (hippocampus, adult, donor10258)
- 11551-120C3 (Mouse Astrocytes - hippocampus, donor2)
- 11632-122C3 (Mouse Astrocytes - hippocampus, donor3)
- 11644-122D6 (Mouse Neurons - hippocampal, donor3)
- 11709-123B8 (Mouse Astrocytes - hippocampus, donor1)
- 11721-123D2 (Mouse Neurons - hippocampal, donor1)
- 11739-123F2 (Mouse Neurons - hippocampal, donor2)
... further results Mouse (Mus musculus)
- 10153-102I9 (hippocampus, adult, donor10252)
- 10169-103B7 (hippocampus - adult, donor10196)
- 10363-105F3 (hippocampus, newborn, donor10223)
- 10374-105G5 (hippocampus, adult, donor10258)
- 11551-120C3 (Mouse Astrocytes - hippocampus, donor2)
- 11632-122C3 (Mouse Astrocytes - hippocampus, donor3)
- 11644-122D6 (Mouse Neurons - hippocampal, donor3)
- 11709-123B8 (Mouse Astrocytes - hippocampus, donor1)
- 11721-123D2 (Mouse Neurons - hippocampal, donor1)
- 11739-123F2 (Mouse Neurons - hippocampal, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002421 (hippocampal formation), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.68e-99 | FFCP PHASE1:Hg19::chr2:149881275..149881284,+#_34ef90ebb24c287e0129720e4bcc043b | p@chr2:149881275..149881284, + |
| 5.68e-99 | FFCP PHASE2:Hg19::chrX:148561320..148561329,-#_34ef90ebb24c287e0129720e4bcc043b | p@chrX:148561320..148561329, - |
| 5.68e-99 | FFCP PHASE1:Hg19::chrX:148561320..148561329,-#_34ef90ebb24c287e0129720e4bcc043b | p@chrX:148561320..148561329, - |
| 5.68e-99 | FFCP PHASE2:Hg19::chr2:149881275..149881284,+#_34ef90ebb24c287e0129720e4bcc043b | p@chr2:149881275..149881284, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr2:187628574..187628585,+#_c444c6931f327308e73295794586b2b1 | p@chr2:187628574..187628585, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:187628574..187628585,+#_c444c6931f327308e73295794586b2b1 | p@chr2:187628574..187628585, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr6:132937900..132937907,-#_c444c6931f327308e73295794586b2b1 | p@chr6:132937900..132937907, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr6:132937900..132937907,-#_c444c6931f327308e73295794586b2b1 | p@chr6:132937900..132937907, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chrX:110464144..110464149,+#_c444c6931f327308e73295794586b2b1 | p@chrX:110464144..110464149, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chrX:110464144..110464149,+#_c444c6931f327308e73295794586b2b1 | p@chrX:110464144..110464149, + |
| 4.22e-98 | FFCP PHASE2:Hg19::chr3:71777824..71777833,-#_9d476cd6ca3c89fe6c6c82236290322e | p28@EIF4E3 |
| 4.22e-98 | FFCP PHASE1:Hg19::chr11:79784329..79784335,-#_9d476cd6ca3c89fe6c6c82236290322e | p@chr11:79784329..79784335, - |
| 4.22e-98 | FFCP PHASE1:Hg19::chr3:172166557..172166598,+#_9d476cd6ca3c89fe6c6c82236290322e | p@chr3:172166557..172166598, + |
| 4.22e-98 | FFCP PHASE2:Hg19::chr11:79784329..79784335,-#_9d476cd6ca3c89fe6c6c82236290322e | p@chr11:79784329..79784335, - |
| 4.22e-98 | FFCP PHASE1:Hg19::chr3:71777824..71777833,-#_9d476cd6ca3c89fe6c6c82236290322e | p28@EIF4E3 |
| 4.22e-98 | FFCP PHASE2:Hg19::chr5:119669127..119669137,-#_9d476cd6ca3c89fe6c6c82236290322e | p4@ENST00000514240 |
| 4.22e-98 | FFCP PHASE1:Hg19::chr5:119669127..119669137,-#_9d476cd6ca3c89fe6c6c82236290322e | p4@ENST00000514240 |
| 4.22e-98 | FFCP PHASE2:Hg19::chr3:172166557..172166598,+#_9d476cd6ca3c89fe6c6c82236290322e | p@chr3:172166557..172166598, + |
| 7.79e-79 | FFCP PHASE2:Hg19::chr18:24435190..24435201,-#_ba8ad55101e5d35f7f138ff5edd4f99a | p@chr18:24435190..24435201, - |
| 7.79e-79 | FFCP PHASE1:Hg19::chr18:24435190..24435201,-#_ba8ad55101e5d35f7f138ff5edd4f99a | p@chr18:24435190..24435201, - |
| 7.41e-67 | FFCP PHASE1:Hg19::chr10:125454018..125454027,+#_1172bad77084887014d11251f683d3d4 | p@chr10:125454018..125454027, + |
| 7.41e-67 | FFCP PHASE2:Hg19::chr10:125454018..125454027,+#_1172bad77084887014d11251f683d3d4 | p@chr10:125454018..125454027, + |
| 1.04e-66 | FFCP PHASE2:Hg19::chr3:12225071..12225084,+#_96090d3883ccdc54f3c9b6705ca688ba | p15@SYN2 |
| 1.04e-66 | FFCP PHASE1:Hg19::chr3:12225071..12225084,+#_96090d3883ccdc54f3c9b6705ca688ba | p15@SYN2 |
| 7.73e-66 | FFCP PHASE2:Hg19::chrX:72432586..72432597,-#_4145dce13f7b26b7016907d23c0d2b53 | p@chrX:72432586..72432597, - |
| 7.73e-66 | FFCP PHASE1:Hg19::chrX:72432586..72432597,-#_4145dce13f7b26b7016907d23c0d2b53 | p@chrX:72432586..72432597, - |
| 2.02e-57 | FFCP PHASE2:Hg19::chr7:130745294..130745303,-#_b1e4420becd8abda6abc2ea3f68db575 | p@chr7:130745294..130745303, - |
| 2.02e-57 | FFCP PHASE2:Hg19::chrX:13789306..13789315,-#_b1e4420becd8abda6abc2ea3f68db575 | p@chrX:13789306..13789315, - |
| 2.02e-57 | FFCP PHASE1:Hg19::chr7:130745294..130745303,-#_b1e4420becd8abda6abc2ea3f68db575 | p@chr7:130745294..130745303, - |
| 2.02e-57 | FFCP PHASE1:Hg19::chrX:13789306..13789315,-#_b1e4420becd8abda6abc2ea3f68db575 | p@chrX:13789306..13789315, - |
| 2.69e-57 | FFCP PHASE2:Hg19::chr19:49932793..49932820,-#_b42af886966ac7d9ded83da0859c0816 | p@chr19:49932793..49932820, - |
| 2.69e-57 | FFCP PHASE1:Hg19::chr19:49932793..49932820,-#_b42af886966ac7d9ded83da0859c0816 | p@chr19:49932793..49932820, - |
| 3.58e-57 | FFCP PHASE2:Hg19::chr2:79601075..79601083,+#_169f0642acb24ca5b30468ac96276c9d | p@chr2:79601075..79601083, + |
| 3.58e-57 | FFCP PHASE1:Hg19::chr2:79601075..79601083,+#_169f0642acb24ca5b30468ac96276c9d | p@chr2:79601075..79601083, + |
| 3.58e-57 | FFCP PHASE2:Hg19::chr5:111964224..111964247,+#_169f0642acb24ca5b30468ac96276c9d | p1@ENST00000507565 |
| 3.58e-57 | FFCP PHASE1:Hg19::chr5:111964224..111964247,+#_169f0642acb24ca5b30468ac96276c9d | p1@ENST00000507565 |
| 4.77e-57 | FFCP PHASE2:Hg19::chr7:22158177..22158186,-#_d39c3bcd52b651df85bfb1e96ddd5cc7 | p@chr7:22158177..22158186, - |
| 4.77e-57 | FFCP PHASE1:Hg19::chr7:22158177..22158186,-#_d39c3bcd52b651df85bfb1e96ddd5cc7 | p@chr7:22158177..22158186, - |
| 6.36e-57 | FFCP PHASE2:Hg19::chr8:42981738..42981749,+#_df799ee581faf5df90822cb1258454cf | p4@AK056481 |
| 6.36e-57 | FFCP PHASE1:Hg19::chr8:42981738..42981749,+#_df799ee581faf5df90822cb1258454cf | p4@AK056481 |
| 8.82e-51 | FFCP PHASE1:Hg19::chr5:82155710..82155724,-#_33eabcca4ab673392dfc56d851d822b0 | p@chr5:82155710..82155724, - |
| 8.82e-51 | FFCP PHASE2:Hg19::chr5:82155710..82155724,-#_33eabcca4ab673392dfc56d851d822b0 | p@chr5:82155710..82155724, - |
| 1.14e-50 | FFCP PHASE2:Hg19::chr17:27901500..27901511,-#_b3ce97e7d1e9b64d4b75b136cbcd5fb1 | p25@GIT1 |
| 1.14e-50 | FFCP PHASE1:Hg19::chr17:27901500..27901511,-#_b3ce97e7d1e9b64d4b75b136cbcd5fb1 | p25@GIT1 |
| 1.14e-50 | FFCP PHASE1:Hg19::chr15:43814895..43814906,+#_b3ce97e7d1e9b64d4b75b136cbcd5fb1 | p35@MAP1A |
| 1.14e-50 | FFCP PHASE2:Hg19::chr15:43814895..43814906,+#_b3ce97e7d1e9b64d4b75b136cbcd5fb1 | p35@MAP1A |
| 2.42e-50 | FFCP PHASE2:Hg19::chr13:101712292..101712306,-#_55b63e9e2f7ce195dcbd37d70a88dab4 | p@chr13:101712292..101712306, - |
| 2.42e-50 | FFCP PHASE1:Hg19::chr13:101712292..101712306,-#_55b63e9e2f7ce195dcbd37d70a88dab4 | p@chr13:101712292..101712306, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr19:49932741..49932746,-#_5cba416437d4e732f54bae0bf6483f3b | p@chr19:49932741..49932746, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr16:7240507..7240509,+#_5cba416437d4e732f54bae0bf6483f3b | p@chr16:7240507..7240509, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr3:131756644..131756651,-#_5cba416437d4e732f54bae0bf6483f3b | p13@CPNE4 |
| 2.74e-50 | FFCP PHASE1:Hg19::chr19:49932741..49932746,-#_5cba416437d4e732f54bae0bf6483f3b | p@chr19:49932741..49932746, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr16:7240507..7240509,+#_5cba416437d4e732f54bae0bf6483f3b | p@chr16:7240507..7240509, + |
| 2.74e-50 | FFCP PHASE2:Hg19::chr3:131756632..131756637,-#_5cba416437d4e732f54bae0bf6483f3b | p11@CPNE4 |
| 2.74e-50 | FFCP PHASE2:Hg19::chr3:131756644..131756651,-#_5cba416437d4e732f54bae0bf6483f3b | p13@CPNE4 |
| 2.74e-50 | FFCP PHASE1:Hg19::chr3:131756632..131756637,-#_5cba416437d4e732f54bae0bf6483f3b | p11@CPNE4 |
| 3.11e-50 | FFCP PHASE1:Hg19::chr11:123502588..123502633,-#_99adba46d89ff3059de7a11a078290b3 | p16@SCN3B |
| 3.11e-50 | FFCP PHASE2:Hg19::chr11:123502588..123502633,-#_99adba46d89ff3059de7a11a078290b3 | p16@SCN3B |
| 4.0e-50 | FFCP PHASE2:Hg19::chr3:58552313..58552322,-#_2a4fbe385ba29a251193c0a231af2638 | p@chr3:58552313..58552322, - |
| 4.0e-50 | FFCP PHASE1:Hg19::chr3:58552313..58552322,-#_2a4fbe385ba29a251193c0a231af2638 | p@chr3:58552313..58552322, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr21:27650939..27650945,-#_09bdc6642d6e673f2e1850d469efd77c | p@chr21:27650939..27650945, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr8:26365361..26365372,-#_09bdc6642d6e673f2e1850d469efd77c | p5@PNMA2 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr18:24433388..24433397,-#_09bdc6642d6e673f2e1850d469efd77c | p20@AQP4 |
| 4.52e-50 | FFCP PHASE1:Hg19::chr18:24433388..24433397,-#_09bdc6642d6e673f2e1850d469efd77c | p20@AQP4 |
| 4.52e-50 | FFCP PHASE1:Hg19::chr1:99772065..99772074,+#_09bdc6642d6e673f2e1850d469efd77c | p13@LPPR4 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr21:27651095..27651104,+#_09bdc6642d6e673f2e1850d469efd77c | p@chr21:27651095..27651104, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr8:81570615..81570619,-#_09bdc6642d6e673f2e1850d469efd77c | p@chr8:81570615..81570619, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chrX:152095682..152095708,-#_09bdc6642d6e673f2e1850d469efd77c | p@chrX:152095682..152095708, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr21:27651095..27651104,+#_09bdc6642d6e673f2e1850d469efd77c | p@chr21:27651095..27651104, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chrX:152095682..152095708,-#_09bdc6642d6e673f2e1850d469efd77c | p@chrX:152095682..152095708, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr7:98460933..98460941,-#_09bdc6642d6e673f2e1850d469efd77c | p19@TMEM130 |
| 4.52e-50 | FFCP PHASE1:Hg19::chr8:81570615..81570619,-#_09bdc6642d6e673f2e1850d469efd77c | p@chr8:81570615..81570619, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr20:44330800..44330802,-#_09bdc6642d6e673f2e1850d469efd77c | p@chr20:44330800..44330802, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr8:26365361..26365372,-#_09bdc6642d6e673f2e1850d469efd77c | p5@PNMA2 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr21:27650939..27650945,-#_09bdc6642d6e673f2e1850d469efd77c | p@chr21:27650939..27650945, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr19:4772190..4772197,+#_09bdc6642d6e673f2e1850d469efd77c | p@chr19:4772190..4772197, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr20:44330800..44330802,-#_09bdc6642d6e673f2e1850d469efd77c | p@chr20:44330800..44330802, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr7:98460933..98460941,-#_09bdc6642d6e673f2e1850d469efd77c | p19@TMEM130 |
| 4.52e-50 | FFCP PHASE1:Hg19::chr19:4772190..4772197,+#_09bdc6642d6e673f2e1850d469efd77c | p@chr19:4772190..4772197, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr1:99772065..99772074,+#_09bdc6642d6e673f2e1850d469efd77c | p13@LPPR4 |
| 5.15e-50 | FFCP PHASE2:Hg19::chr14:24037817..24037858,-#_dff6686a1c3c588c9a599bf78025d876 | p@chr14:24037817..24037858, - |
| 5.15e-50 | FFCP PHASE1:Hg19::chr14:24037817..24037858,-#_dff6686a1c3c588c9a599bf78025d876 | p@chr14:24037817..24037858, - |
| 6.61e-50 | FFCP PHASE2:Hg19::chr12:41234328..41234338,+#_5ba14aea95c9807c4415e5d63fc785bb | p@chr12:41234328..41234338, + |
| 6.61e-50 | FFCP PHASE1:Hg19::chr12:41234328..41234338,+#_5ba14aea95c9807c4415e5d63fc785bb | p@chr12:41234328..41234338, + |
| 3.19e-45 | FFCP PHASE1:Hg19::chr19:3294647..3294651,+#_473f6c8afbbd66640ad08416459817df | p@chr19:3294647..3294651, + |
| 3.19e-45 | FFCP PHASE2:Hg19::chr19:3294647..3294651,+#_473f6c8afbbd66640ad08416459817df | p@chr19:3294647..3294651, + |
| 3.19e-45 | FFCP PHASE2:Hg19::chr12:79843202..79843213,+#_473f6c8afbbd66640ad08416459817df | p@chr12:79843202..79843213, + |
| 3.19e-45 | FFCP PHASE1:Hg19::chr12:79843202..79843213,+#_473f6c8afbbd66640ad08416459817df | p@chr12:79843202..79843213, + |
| 6.26e-45 | FFCP PHASE1:Hg19::chr9:87426979..87426990,+#_47025a3c549e81b8cfdf8f064ac8725f | p54@NTRK2 |
| 6.26e-45 | FFCP PHASE2:Hg19::chr5:63258078..63258088,-#_47025a3c549e81b8cfdf8f064ac8725f | p6@HTR1A |
| 6.26e-45 | FFCP PHASE2:Hg19::chr8:27316567..27316576,+#_47025a3c549e81b8cfdf8f064ac8725f | p@chr8:27316567..27316576, + |
| 6.26e-45 | FFCP PHASE1:Hg19::chr8:27316567..27316576,+#_47025a3c549e81b8cfdf8f064ac8725f | p@chr8:27316567..27316576, + |
| 6.26e-45 | FFCP PHASE2:Hg19::chr9:87426979..87426990,+#_47025a3c549e81b8cfdf8f064ac8725f | p54@NTRK2 |
| 6.26e-45 | FFCP PHASE1:Hg19::chr5:63258078..63258088,-#_47025a3c549e81b8cfdf8f064ac8725f | p6@HTR1A |
| 7.83e-45 | FFCP PHASE1:Hg19::chr5:63258105..63258124,-#_d216e154295d162d125fd83ba361c149 | p2@HTR1A |
| 7.83e-45 | FFCP PHASE2:Hg19::chr2:101965038..101965076,-#_d216e154295d162d125fd83ba361c149 | p@chr2:101965038..101965076, - |
| 7.83e-45 | FFCP PHASE1:Hg19::chr2:101965038..101965076,-#_d216e154295d162d125fd83ba361c149 | p@chr2:101965038..101965076, - |
| 7.83e-45 | FFCP PHASE2:Hg19::chr1:160112787..160112798,+#_d216e154295d162d125fd83ba361c149 | p12@ATP1A2 |
| 7.83e-45 | FFCP PHASE2:Hg19::chr5:63258105..63258124,-#_d216e154295d162d125fd83ba361c149 | p2@HTR1A |
| 7.83e-45 | FFCP PHASE1:Hg19::chr1:160112787..160112798,+#_d216e154295d162d125fd83ba361c149 | p12@ATP1A2 |
