UBERON:0002539: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0002539
|name=pharyngeal arch
|namespace=
|def="One of a series of bony or cartilaginous arches that develop in the walls of the mouth cavity and phary...") |
No edit summary |
||
| Line 21: | Line 21: | ||
|part_of=UBERON:0008814;;UBERON:0008816 | |part_of=UBERON:0008814;;UBERON:0008816 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |||
|preceded_by= | |||
}} | }} | ||
Revision as of 17:17, 15 June 2012
| Name: | pharyngeal arch | ||
|---|---|---|---|
| Definition: | "One of a series of bony or cartilaginous arches that develop in the walls of the mouth cavity and pharynx of the embryo. The pharyngeal arches are separated by endodermal outpocketings, the pharyngeal pouches" [NLM:branchial+arch, PMID:16313389, Wikipedia:Pharyngeal_arch] | ||
| Xrefs: |
| ||
| Synonyms: |
"branchial arch" NARROW [BTO:0001785, MP:0002884] "pharyngeal arches" EXACT PLURAL [] "visceral arch" RELATED [] | ||
| Comments: | Numbered cranial to caudal. different in mammals. branchial arch = ZFA:0001613 pharyngeal arch 3-7. generally gill arch 1 = pharyngeal arch 3. terminology varies as to whether branchial arch follows gill or pharyngeal numbering | ||
| Alt_id: | UBERON:MIAA_0000242-XAO_0000096-ZFA_0001306 | ||
| Subset: |
uberon_slim vertebrate_core |
200px-Gray41.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000481(multi-tissue structure),UBERON:0010188(protuberance) |
|---|---|
| part_of: | UBERON:0008814(pharyngeal arch system),UBERON:0008816(embryonic head) |
Children
| is a: | UBERON:0004362 (pharyngeal arch 1) |
|---|---|
| develops from: | UBERON:0008895 (splanchnocranium) |
| part of: | UBERON:0004363 (pharyngeal arch artery),UBERON:0009494 (pharyngeal arch mesenchymal region) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002539 (pharyngeal arch), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.83e-98 | FFCP PHASE2:Hg19::chr22:23586671..23586679,+#_237655ba90deeb7ab85720c295eea96b | p@chr22:23586671..23586679, + |
| 1.83e-98 | FFCP PHASE1:Hg19::chr22:23586671..23586679,+#_237655ba90deeb7ab85720c295eea96b | p@chr22:23586671..23586679, + |
| 2.83e-66 | FFCP PHASE1:Hg19::chr8:7752197..7752201,+#_c43c84b96537d21c400bde770e1edb1a | p1@DEFB4A |
| 2.83e-66 | FFCP PHASE2:Hg19::chr9:22256680..22256685,+#_c43c84b96537d21c400bde770e1edb1a | p@chr9:22256680..22256685, + |
| 2.83e-66 | FFCP PHASE2:Hg19::chr10:106205565..106205599,+#_c43c84b96537d21c400bde770e1edb1a | p@chr10:106205565..106205599, + |
| 2.83e-66 | FFCP PHASE1:Hg19::chr10:106205565..106205599,+#_c43c84b96537d21c400bde770e1edb1a | p@chr10:106205565..106205599, + |
| 2.83e-66 | FFCP PHASE1:Hg19::chr9:22256680..22256685,+#_c43c84b96537d21c400bde770e1edb1a | p@chr9:22256680..22256685, + |
| 2.83e-66 | FFCP PHASE2:Hg19::chr8:7752197..7752201,+#_c43c84b96537d21c400bde770e1edb1a | p1@DEFB4A |
| 8.15e-60 | FFCP PHASE2:Hg19::chr10:106205503..106205518,+#_d6d236ba8909986e56ebe773fcebdb7b | p@chr10:106205503..106205518, + |
| 8.15e-60 | FFCP PHASE1:Hg19::chr10:106205503..106205518,+#_d6d236ba8909986e56ebe773fcebdb7b | p@chr10:106205503..106205518, + |
| 9.96e-60 | FFCP PHASE1:Hg19::chr17:18343257..18343267,+#_2391710b468d35d2ef2982079c005008 | p2@KRT16P1 |
| 9.96e-60 | FFCP PHASE2:Hg19::chr17:18343257..18343267,+#_2391710b468d35d2ef2982079c005008 | p2@KRT16P1 |
| 1.22e-59 | FFCP PHASE1:Hg19::chr16:80068152..80068165,-#_cbd9b0d26746ce9feaf6b6ebbaf9fc58 | p@chr16:80068152..80068165, - |
| 1.22e-59 | FFCP PHASE2:Hg19::chr16:80068152..80068165,-#_cbd9b0d26746ce9feaf6b6ebbaf9fc58 | p@chr16:80068152..80068165, - |
| 5.37e-50 | FFCP PHASE1:Hg19::chr11:102140952..102140956,+#_9392d5da9b41dd80ded72661bf2a6a75 | p@chr11:102140952..102140956, + |
| 5.37e-50 | FFCP PHASE2:Hg19::chr11:102140952..102140956,+#_9392d5da9b41dd80ded72661bf2a6a75 | p@chr11:102140952..102140956, + |
| 1.73e-49 | FFCP PHASE2:Hg19::chr4:143470541..143470551,+#_d7946d8f6d811044a00505a834524774 | p@chr4:143470541..143470551, + |
| 1.73e-49 | FFCP PHASE1:Hg19::chr4:143470541..143470551,+#_d7946d8f6d811044a00505a834524774 | p@chr4:143470541..143470551, + |
| 1.22e-44 | FFCP PHASE1:Hg19::chr16:57954541..57954548,-#_b192d503e967e8e88293133546f2ff48 | p@chr16:57954541..57954548, - |
| 1.22e-44 | FFCP PHASE2:Hg19::chr16:57954541..57954548,-#_b192d503e967e8e88293133546f2ff48 | p@chr16:57954541..57954548, - |
| 3.16e-43 | FFCP PHASE2:Hg19::chr7:137570496..137570504,-#_ba2c262e2e09f60f3d88c9d8d2157504 | p@chr7:137570496..137570504, - |
| 3.16e-43 | FFCP PHASE1:Hg19::chr7:137570496..137570504,-#_ba2c262e2e09f60f3d88c9d8d2157504 | p@chr7:137570496..137570504, - |
| 3.65e-43 | FFCP PHASE1:Hg19::chr1:7447129..7447134,+#_8ff198a4e50b805eec7dd9e5e21b1e06 | p@chr1:7447129..7447134, + |
| 3.65e-43 | FFCP PHASE2:Hg19::chr1:7447129..7447134,+#_8ff198a4e50b805eec7dd9e5e21b1e06 | p@chr1:7447129..7447134, + |
| 5.62e-43 | FFCP PHASE1:Hg19::chr21:44168074..44168079,+#_49a2eccaa946ef707a227a6f340bf200 | p@chr21:44168074..44168079, + |
| 5.62e-43 | FFCP PHASE2:Hg19::chr3:47155553..47155568,-#_49a2eccaa946ef707a227a6f340bf200 | p@chr3:47155553..47155568, - |
| 5.62e-43 | FFCP PHASE1:Hg19::chr3:47155553..47155568,-#_49a2eccaa946ef707a227a6f340bf200 | p@chr3:47155553..47155568, - |
| 5.62e-43 | FFCP PHASE2:Hg19::chr21:44168074..44168079,+#_49a2eccaa946ef707a227a6f340bf200 | p@chr21:44168074..44168079, + |
| 6.3e-38 | FFCP PHASE2:Hg19::chr10:106205489..106205498,+#_8776754d8a78d7eb1cf9dc1ed89efb06 | p@chr10:106205489..106205498, + |
| 6.3e-38 | FFCP PHASE1:Hg19::chr10:106205489..106205498,+#_8776754d8a78d7eb1cf9dc1ed89efb06 | p@chr10:106205489..106205498, + |
| 1.18e-37 | FFCP PHASE2:Hg19::chr18:20493912..20493923,+#_b6a308a60661c0f21362c0d80551bb80 | p@chr18:20493912..20493923, + |
| 1.18e-37 | FFCP PHASE1:Hg19::chr18:20493912..20493923,+#_b6a308a60661c0f21362c0d80551bb80 | p@chr18:20493912..20493923, + |
| 1.34e-37 | FFCP PHASE1:Hg19::chr18:9649081..9649088,+#_a4f8bc769440371b056ffaf65630928b | p@chr18:9649081..9649088, + |
| 1.34e-37 | FFCP PHASE2:Hg19::chr18:9649081..9649088,+#_a4f8bc769440371b056ffaf65630928b | p@chr18:9649081..9649088, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_a60b74b592cb88ba3dccd546c9bc9ef2 | p14@C17orf67 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr4:155387574..155387588,-#_a60b74b592cb88ba3dccd546c9bc9ef2 | p@chr4:155387574..155387588, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr21:27558561..27558565,-#_a60b74b592cb88ba3dccd546c9bc9ef2 | p@chr21:27558561..27558565, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr4:70707713..70707716,-#_a60b74b592cb88ba3dccd546c9bc9ef2 | p@chr4:70707713..70707716, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_a60b74b592cb88ba3dccd546c9bc9ef2 | p14@C17orf67 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr8:90366581..90366594,-#_a60b74b592cb88ba3dccd546c9bc9ef2 | p@chr8:90366581..90366594, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr6:21648948..21648949,+#_a60b74b592cb88ba3dccd546c9bc9ef2 | p@chr6:21648948..21648949, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr4:155387574..155387588,-#_a60b74b592cb88ba3dccd546c9bc9ef2 | p@chr4:155387574..155387588, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr4:70707713..70707716,-#_a60b74b592cb88ba3dccd546c9bc9ef2 | p@chr4:70707713..70707716, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr21:27558561..27558565,-#_a60b74b592cb88ba3dccd546c9bc9ef2 | p@chr21:27558561..27558565, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr8:90366581..90366594,-#_a60b74b592cb88ba3dccd546c9bc9ef2 | p@chr8:90366581..90366594, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr6:21648948..21648949,+#_a60b74b592cb88ba3dccd546c9bc9ef2 | p@chr6:21648948..21648949, + |
| 5.98e-34 | FFCP PHASE2:Hg19::chr9:16094653..16094654,+#_cfe2cfa09b3f7ff5199af3b68e906f45 | p@chr9:16094653..16094654, + |
| 5.98e-34 | FFCP PHASE1:Hg19::chr9:16094653..16094654,+#_cfe2cfa09b3f7ff5199af3b68e906f45 | p@chr9:16094653..16094654, + |
| 6.72e-34 | FFCP PHASE1:Hg19::chr1:116072140..116072172,+#_cd4e5165078ccddfe9e4a7e35cb5b669 | p@chr1:116072140..116072172, + |
| 6.72e-34 | FFCP PHASE2:Hg19::chr1:116072140..116072172,+#_cd4e5165078ccddfe9e4a7e35cb5b669 | p@chr1:116072140..116072172, + |
| 8.35e-34 | FFCP PHASE2:Hg19::chr9:27524670..27524673,+#_a78f9f49139288100605eaf7a95f9e10 | p5@IFNK |
| 8.35e-34 | FFCP PHASE1:Hg19::chr9:27524670..27524673,+#_a78f9f49139288100605eaf7a95f9e10 | p5@IFNK |
| 1.05e-33 | FFCP PHASE2:Hg19::chr14:81221483..81221489,+#_02d8804805c328834cb69bf6f279567b | p@chr14:81221483..81221489, + |
| 1.05e-33 | FFCP PHASE1:Hg19::chr14:81221483..81221489,+#_02d8804805c328834cb69bf6f279567b | p@chr14:81221483..81221489, + |
| 1.31e-33 | FFCP PHASE2:Hg19::chr8:141728760..141728771,-#_cd78868b41f8ba0bfd10081e2cc53743 | p36@PTK2 |
| 1.31e-33 | FFCP PHASE1:Hg19::chr8:141728760..141728771,-#_cd78868b41f8ba0bfd10081e2cc53743 | p36@PTK2 |
| 1.86e-30 | FFCP PHASE2:Hg19::chr18:20493879..20493891,+#_0402dccb970a23821c73fb645f4c6f19 | p@chr18:20493879..20493891, + |
| 1.86e-30 | FFCP PHASE2:Hg19::chr12:98739159..98739191,-#_0402dccb970a23821c73fb645f4c6f19 | p@chr12:98739159..98739191, - |
| 1.86e-30 | FFCP PHASE1:Hg19::chr12:98739159..98739191,-#_0402dccb970a23821c73fb645f4c6f19 | p@chr12:98739159..98739191, - |
| 1.86e-30 | FFCP PHASE1:Hg19::chr18:20493879..20493891,+#_0402dccb970a23821c73fb645f4c6f19 | p@chr18:20493879..20493891, + |
| 2.28e-30 | FFCP PHASE2:Hg19::chr8:124850358..124850380,+#_bbca7e07b73b4e1029a54ede89b1e4dc | p@chr8:124850358..124850380, + |
| 2.28e-30 | FFCP PHASE1:Hg19::chr8:124850358..124850380,+#_bbca7e07b73b4e1029a54ede89b1e4dc | p@chr8:124850358..124850380, + |
| 4.1e-28 | FFCP PHASE2:Hg19::chr5:167247865..167247872,+#_63a7e0ecfb8c0fda08206b718889baa3 | p23@ODZ2 |
| 4.1e-28 | FFCP PHASE1:Hg19::chr5:167247865..167247872,+#_63a7e0ecfb8c0fda08206b718889baa3 | p23@ODZ2 |
| 4.92e-28 | FFCP PHASE2:Hg19::chr13:30259768..30259777,+#_f105ff9300428ed875b5f574efa71f78 | p@chr13:30259768..30259777, + |
| 4.92e-28 | FFCP PHASE1:Hg19::chr13:30259768..30259777,+#_f105ff9300428ed875b5f574efa71f78 | p@chr13:30259768..30259777, + |
| 7.1e-28 | FFCP PHASE1:Hg19::chr16:57954525..57954533,-#_f71b0dfeed31e1ad8352ae669b307526 | p@chr16:57954525..57954533, - |
| 7.1e-28 | FFCP PHASE2:Hg19::chr16:57954525..57954533,-#_f71b0dfeed31e1ad8352ae669b307526 | p@chr16:57954525..57954533, - |
| 1.76e-27 | FFCP PHASE2:Hg19::chr1:153113940..153113972,-#_434eb88d31b782d5adfd672a8616ae52 | p1@SPRR2C, p2@SPRR2D, p3@SPRR2A |
| 1.76e-27 | FFCP PHASE1:Hg19::chr1:153113940..153113972,-#_434eb88d31b782d5adfd672a8616ae52 | p1@SPRR2C, p2@SPRR2D, p3@SPRR2A |
| 1.82e-27 | FFCP PHASE2:Hg19::chr12:28299014..28299023,+#_ba2d192b515f38d019b4d4a3a4b7b6b8 | p20@CCDC91 |
| 1.82e-27 | FFCP PHASE1:Hg19::chr12:28299014..28299023,+#_ba2d192b515f38d019b4d4a3a4b7b6b8 | p20@CCDC91 |
| 2.32e-27 | FFCP PHASE1:Hg19::chr5:167247103..167247112,+#_1064acb45eb730ec564ae34ae4b8fe65 | p@chr5:167247103..167247112, + |
| 2.32e-27 | FFCP PHASE2:Hg19::chr5:167247103..167247112,+#_1064acb45eb730ec564ae34ae4b8fe65 | p@chr5:167247103..167247112, + |
| 4.06e-27 | FFCP PHASE1:Hg19::chr8:144414013..144414023,-#_f0cc7061d3128eeae56eb474329eb019 | p8@TOP1MT |
| 4.06e-27 | FFCP PHASE2:Hg19::chr8:144414013..144414023,-#_f0cc7061d3128eeae56eb474329eb019 | p8@TOP1MT |
| 1.09e-26 | FFCP PHASE1:Hg19::chr9:5436634..5436659,-#_2e1e7317bed6768ef50e96fdd27028e7 | p11@C9orf46 |
| 1.09e-26 | FFCP PHASE2:Hg19::chr9:5436634..5436659,-#_2e1e7317bed6768ef50e96fdd27028e7 | p11@C9orf46 |
| 1.19e-25 | FFCP PHASE1:Hg19::chr12:28116496..28116507,-#_f0ac3837ca61483269cebeaa9f55fd9d | p@chr12:28116496..28116507, - |
| 1.19e-25 | FFCP PHASE2:Hg19::chr12:28116496..28116507,-#_f0ac3837ca61483269cebeaa9f55fd9d | p@chr12:28116496..28116507, - |
| 7.24e-24 | FFCP PHASE2:Hg19::chr7:137570475..137570486,-#_b7fbd63bfca2a06bc79e9df8b1a4f392 | p@chr7:137570475..137570486, - |
| 7.24e-24 | FFCP PHASE1:Hg19::chr7:137570475..137570486,-#_b7fbd63bfca2a06bc79e9df8b1a4f392 | p@chr7:137570475..137570486, - |
| 9.87e-24 | FFCP PHASE2:Hg19::chr10:47746929..47746964,+#_1d722e39c2c1b66799d9d06e56553041 | p1@ANXA8L2 |
| 9.87e-24 | FFCP PHASE1:Hg19::chr10:47746929..47746964,+#_1d722e39c2c1b66799d9d06e56553041 | p1@ANXA8L2 |
| 1.57e-23 | FFCP PHASE1:Hg19::chr5:56248155..56248156,+#_5e12e04b0d98430adfe6dcf67431f191 | p@chr5:56248155..56248156, + |
| 1.57e-23 | FFCP PHASE2:Hg19::chr5:56248155..56248156,+#_5e12e04b0d98430adfe6dcf67431f191 | p@chr5:56248155..56248156, + |
| 4.34e-23 | FFCP PHASE2:Hg19::chr9:27524417..27524425,+#_afee7865abce0c0cd3b5c471d5d08ce3 | p4@IFNK |
| 4.34e-23 | FFCP PHASE1:Hg19::chr9:27524417..27524425,+#_afee7865abce0c0cd3b5c471d5d08ce3 | p4@IFNK |
| 6.78e-23 | FFCP PHASE1:Hg19::chr4:71388662..71388695,+#_a5b123ad78119b1ddb4fb3b722827e02 | p@chr4:71388662..71388695, + |
| 6.78e-23 | FFCP PHASE1:Hg19::chr17:18343216..18343225,+#_a5b123ad78119b1ddb4fb3b722827e02 | p1@KRT16P1 |
| 6.78e-23 | FFCP PHASE2:Hg19::chr17:18343216..18343225,+#_a5b123ad78119b1ddb4fb3b722827e02 | p1@KRT16P1 |
| 6.78e-23 | FFCP PHASE2:Hg19::chr4:71388662..71388695,+#_a5b123ad78119b1ddb4fb3b722827e02 | p@chr4:71388662..71388695, + |
| 2.83e-22 | FFCP PHASE1:Hg19::chr18:9617195..9617198,-#_ba0cf6d509d62c7a31b987c9dbcdf980 | p@chr18:9617195..9617198, - |
| 2.83e-22 | FFCP PHASE2:Hg19::chr18:9617195..9617198,-#_ba0cf6d509d62c7a31b987c9dbcdf980 | p@chr18:9617195..9617198, - |
| 3.78e-22 | FFCP PHASE2:Hg19::chr11:13073062..13073067,+#_85b733fb39c7a7f30a765551d35bd7b4 | p@chr11:13073062..13073067, + |
| 3.78e-22 | FFCP PHASE1:Hg19::chr11:13073062..13073067,+#_85b733fb39c7a7f30a765551d35bd7b4 | p@chr11:13073062..13073067, + |
| 4.36e-22 | FFCP PHASE2:Hg19::chr11:93754316..93754353,+#_4aca3ccdb469ac4c17739a7e2bff9456 | p2@HEPHL1 |
| 4.36e-22 | FFCP PHASE2:Hg19::chr12:47182487..47182490,-#_4aca3ccdb469ac4c17739a7e2bff9456 | p@chr12:47182487..47182490, - |
| 4.36e-22 | FFCP PHASE1:Hg19::chr11:93754316..93754353,+#_4aca3ccdb469ac4c17739a7e2bff9456 | p2@HEPHL1 |
| 4.36e-22 | FFCP PHASE1:Hg19::chr12:47182487..47182490,-#_4aca3ccdb469ac4c17739a7e2bff9456 | p@chr12:47182487..47182490, - |
