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Revision as of 17:17, 15 June 2012

Name:presomitic mesoderm
Definition:"Unsegmented field of paraxial mesoderm present posterior to the most recently formed somite pair, from which somites will form. <a href='http://zfin.org/cgi-bin/ZFIN_jump?record=ZDB-PUB-961014-576'>Kimmel et al, 1995.</a>" [ZFIN:curator]
Xrefs:
links:

AAO:0011086
EFO:0001982
TAO:0000279
VHOG:0000559
XAO:0000057

ZFA:0000279
Synonyms: "PSM" RELATED []
"segmental plate" EXACT []
"somitogenic mesoderm" RELATED []
"unsegmented paraxial mesoderm" EXACT [UBERON:cjm]
Alt_id: UBERON:XAO_0000057-ZFA_0000279

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000061(anatomical structure),UBERON:0002050(embryonic structure),UBERON:0004120(mesoderm-derived structure)
develops_from:UBERON:0007282(presumptive segmental plate),UBERON:0009618(trunk paraxial mesoderm)
part_of:UBERON:0003077(paraxial mesoderm)



Children

develops from:UBERON:0002329 (somite)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003059 (presomitic mesoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data