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Revision as of 17:19, 15 June 2012

Name:neural tissue
Definition:"Portion of tissue which consists of neurons, neuroglia and vasculature. Examples: Neural tissue of brain, neural tissue of peripheral ganglion, neural tissue of nerve[FMA]." [FMA:9642]
Xrefs:
links:

AAO:0000325
AEO:0000123
EHDAA2:0003123
FMA:9642
GAID:609
MESH:A.08.561
ncithesaurus:Nervous_Tissue
OpenCyc:Mx4rVmfYCsQ_QdeM_bFAeS8NRQ

SCTID:91728009
Synonyms: "nerve tissue" EXACT [FMA:9642]
"nervous tissue" EXACT [FMA:9642]
"portion of neural tissue" EXACT [FMA:9642]
Comments:FMA definition includes vasculature

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000073(regional part of nervous system),UBERON:0000479(tissue)
disjoint_from:UBERON:0004755(skeletal tissue)
part_of:UBERON:0001016(nervous system)



Children

is a:UBERON:0000045 (ganglion),UBERON:0001810 (nerve plexus)
disjoint from:UBERON:0001013 (adipose tissue),UBERON:0002385 (muscle tissue)
derives from:FF:0102912 (neuroepithelioma cell line sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003714 (neural tissue), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.75e-130FFCP PHASE1:Hg19::chr2:212586166..212586168,-#_f779dacc1bc39f297c035798afc856a8p@chr2:212586166..212586168, -
1.75e-130FFCP PHASE2:Hg19::chr2:212586166..212586168,-#_f779dacc1bc39f297c035798afc856a8p@chr2:212586166..212586168, -
1.55e-98FFCP PHASE2:Hg19::chr12:57628762..57628773,-#_33bae9ebb65e06dd32204f9d07c666edp@chr12:57628762..57628773, -
1.55e-98FFCP PHASE1:Hg19::chr1:21339635..21339636,-#_33bae9ebb65e06dd32204f9d07c666edp@chr1:21339635..21339636, -
1.55e-98FFCP PHASE2:Hg19::chr1:21339635..21339636,-#_33bae9ebb65e06dd32204f9d07c666edp@chr1:21339635..21339636, -
1.55e-98FFCP PHASE1:Hg19::chr12:57628762..57628773,-#_33bae9ebb65e06dd32204f9d07c666edp@chr12:57628762..57628773, -
5.22e-79FFCP PHASE1:Hg19::chr8:6081804..6081807,-#_dee53416bc5436e6f221e2232f8b2f4ep@chr8:6081804..6081807, -
5.22e-79FFCP PHASE2:Hg19::chr8:6081804..6081807,-#_dee53416bc5436e6f221e2232f8b2f4ep@chr8:6081804..6081807, -
2.03e-66FFCP PHASE1:Hg19::chr8:27057116..27057118,+#_c6b72cfb226974d668817d576171e1fdp@chr8:27057116..27057118, +
2.03e-66FFCP PHASE2:Hg19::chr8:27057116..27057118,+#_c6b72cfb226974d668817d576171e1fdp@chr8:27057116..27057118, +
2.84e-66FFCP PHASE2:Hg19::chr11:16629621..16629629,-#_d1c0458216e37842ef4be6df0ef9a4cdp30@SOX6
2.84e-66FFCP PHASE1:Hg19::chr11:16629621..16629629,-#_d1c0458216e37842ef4be6df0ef9a4cdp30@SOX6
7.73e-66FFCP PHASE2:Hg19::chr2:29703653..29703657,-#_0e13d118c9c2d633aa8057d83f337821p@chr2:29703653..29703657, -
7.73e-66FFCP PHASE1:Hg19::chr2:29703653..29703657,-#_0e13d118c9c2d633aa8057d83f337821p@chr2:29703653..29703657, -
2.0e-56FFCP PHASE2:Hg19::chr11:126010526..126010554,-#_521b9313f370a70b37dd4e806affe7c9p@chr11:126010526..126010554, -
2.0e-56FFCP PHASE1:Hg19::chr11:126010526..126010554,-#_521b9313f370a70b37dd4e806affe7c9p@chr11:126010526..126010554, -
2.74e-50FFCP PHASE1:Hg19::chr18:74702556..74702558,-#_6bc149423710c074798d272d1b1e2e53p@chr18:74702556..74702558, -
2.74e-50FFCP PHASE1:Hg19::chr2:60133192..60133194,-#_6bc149423710c074798d272d1b1e2e53p@chr2:60133192..60133194, -
2.74e-50FFCP PHASE1:Hg19::chr18:25161980..25161984,-#_6bc149423710c074798d272d1b1e2e53p@chr18:25161980..25161984, -
2.74e-50FFCP PHASE1:Hg19::chr5:149250331..149250335,-#_6bc149423710c074798d272d1b1e2e53p@chr5:149250331..149250335, -
2.74e-50FFCP PHASE2:Hg19::chr2:60133192..60133194,-#_6bc149423710c074798d272d1b1e2e53p@chr2:60133192..60133194, -
2.74e-50FFCP PHASE2:Hg19::chr14:105807545..105807554,+#_6bc149423710c074798d272d1b1e2e53p@chr14:105807545..105807554, +
2.74e-50FFCP PHASE1:Hg19::chr5:151258901..151258902,+#_6bc149423710c074798d272d1b1e2e53p@chr5:151258901..151258902, +
2.74e-50FFCP PHASE2:Hg19::chr5:149250331..149250335,-#_6bc149423710c074798d272d1b1e2e53p@chr5:149250331..149250335, -
2.74e-50FFCP PHASE2:Hg19::chr5:151258901..151258902,+#_6bc149423710c074798d272d1b1e2e53p@chr5:151258901..151258902, +
2.74e-50FFCP PHASE1:Hg19::chr8:37824442..37824447,-#_6bc149423710c074798d272d1b1e2e53p9@ADRB3
2.74e-50FFCP PHASE2:Hg19::chr18:74702556..74702558,-#_6bc149423710c074798d272d1b1e2e53p@chr18:74702556..74702558, -
2.74e-50FFCP PHASE2:Hg19::chr18:25161980..25161984,-#_6bc149423710c074798d272d1b1e2e53p@chr18:25161980..25161984, -
2.74e-50FFCP PHASE2:Hg19::chr7:15056365..15056368,-#_6bc149423710c074798d272d1b1e2e53p@chr7:15056365..15056368, -
2.74e-50FFCP PHASE2:Hg19::chr4:127394496..127394500,-#_6bc149423710c074798d272d1b1e2e53p@chr4:127394496..127394500, -
2.74e-50FFCP PHASE1:Hg19::chr4:127394496..127394500,-#_6bc149423710c074798d272d1b1e2e53p@chr4:127394496..127394500, -
2.74e-50FFCP PHASE1:Hg19::chr7:15056365..15056368,-#_6bc149423710c074798d272d1b1e2e53p@chr7:15056365..15056368, -
2.74e-50FFCP PHASE2:Hg19::chr1:62928606..62928608,+#_6bc149423710c074798d272d1b1e2e53p@chr1:62928606..62928608, +
2.74e-50FFCP PHASE1:Hg19::chr1:62928606..62928608,+#_6bc149423710c074798d272d1b1e2e53p@chr1:62928606..62928608, +
2.74e-50FFCP PHASE1:Hg19::chr2:188432107..188432111,+#_6bc149423710c074798d272d1b1e2e53p@chr2:188432107..188432111, +
2.74e-50FFCP PHASE2:Hg19::chr8:37824442..37824447,-#_6bc149423710c074798d272d1b1e2e53p9@ADRB3
2.74e-50FFCP PHASE1:Hg19::chr1:22696471..22696505,-#_6bc149423710c074798d272d1b1e2e53p@chr1:22696471..22696505, -
2.74e-50FFCP PHASE2:Hg19::chr8:12808791..12808798,+#_6bc149423710c074798d272d1b1e2e53p28@KIAA1456
2.74e-50FFCP PHASE2:Hg19::chr2:188432107..188432111,+#_6bc149423710c074798d272d1b1e2e53p@chr2:188432107..188432111, +
2.74e-50FFCP PHASE1:Hg19::chr8:12808791..12808798,+#_6bc149423710c074798d272d1b1e2e53p28@KIAA1456
2.74e-50FFCP PHASE2:Hg19::chr1:22696471..22696505,-#_6bc149423710c074798d272d1b1e2e53p@chr1:22696471..22696505, -
2.74e-50FFCP PHASE1:Hg19::chr14:105807545..105807554,+#_6bc149423710c074798d272d1b1e2e53p@chr14:105807545..105807554, +
4.52e-50FFCP PHASE2:Hg19::chr4:155299368..155299375,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr4:155299368..155299375, -
4.52e-50FFCP PHASE2:Hg19::chr8:126163123..126163134,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr8:126163123..126163134, +
4.52e-50FFCP PHASE1:Hg19::chr5:33229308..33229311,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr5:33229308..33229311, -
4.52e-50FFCP PHASE2:Hg19::chr17:39023472..39023477,-#_9b72837bdb72ff9efe1143abbdbacba2p1@KRT12
4.52e-50FFCP PHASE1:Hg19::chr18:39859562..39859566,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr18:39859562..39859566, +
4.52e-50FFCP PHASE2:Hg19::chr7:77789390..77789399,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr7:77789390..77789399, -
4.52e-50FFCP PHASE2:Hg19::chr8:37824009..37824022,-#_9b72837bdb72ff9efe1143abbdbacba2p3@ADRB3
4.52e-50FFCP PHASE1:Hg19::chr7:73444812..73444816,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr7:73444812..73444816, +
4.52e-50FFCP PHASE2:Hg19::chr5:109466651..109466653,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr5:109466651..109466653, +
4.52e-50FFCP PHASE1:Hg19::chr3:27750995..27750997,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr3:27750995..27750997, -
4.52e-50FFCP PHASE1:Hg19::chr2:29645795..29645797,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr2:29645795..29645797, +
4.52e-50FFCP PHASE2:Hg19::chr9:74167667..74167687,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr9:74167667..74167687, -
4.52e-50FFCP PHASE2:Hg19::chr13:64423563..64423566,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr13:64423563..64423566, +
4.52e-50FFCP PHASE2:Hg19::chr8:130597061..130597068,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr8:130597061..130597068, +
4.52e-50FFCP PHASE2:Hg19::chr6:16317123..16317126,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr6:16317123..16317126, +
4.52e-50FFCP PHASE1:Hg19::chr7:91509972..91509984,-#_9b72837bdb72ff9efe1143abbdbacba2p3@MTERF
4.52e-50FFCP PHASE1:Hg19::chr5:109466651..109466653,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr5:109466651..109466653, +
4.52e-50FFCP PHASE2:Hg19::chr3:181328472..181328478,+#_9b72837bdb72ff9efe1143abbdbacba2p25@SOX2-OT
4.52e-50FFCP PHASE2:Hg19::chr10:62149979..62149980,-#_9b72837bdb72ff9efe1143abbdbacba2p59@ANK3
4.52e-50FFCP PHASE2:Hg19::chr3:13992334..13992338,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr3:13992334..13992338, -
4.52e-50FFCP PHASE1:Hg19::chr3:193615743..193615750,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr3:193615743..193615750, -
4.52e-50FFCP PHASE1:Hg19::chr8:130597061..130597068,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr8:130597061..130597068, +
4.52e-50FFCP PHASE2:Hg19::chr12:72875355..72875358,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr12:72875355..72875358, +
4.52e-50FFCP PHASE1:Hg19::chr14:88034381..88034386,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr14:88034381..88034386, -
4.52e-50FFCP PHASE1:Hg19::chr9:19514976..19514978,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr9:19514976..19514978, -
4.52e-50FFCP PHASE1:Hg19::chr6:168558338..168558388,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr6:168558338..168558388, -
4.52e-50FFCP PHASE2:Hg19::chr1:1413227..1413230,+#_9b72837bdb72ff9efe1143abbdbacba2p2@ATAD3B
4.52e-50FFCP PHASE1:Hg19::chr1:1361494..1361497,+#_9b72837bdb72ff9efe1143abbdbacba2p7@TMEM88B
4.52e-50FFCP PHASE1:Hg19::chr10:62149979..62149980,-#_9b72837bdb72ff9efe1143abbdbacba2p59@ANK3
4.52e-50FFCP PHASE2:Hg19::chr18:61506836..61506840,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr18:61506836..61506840, +
4.52e-50FFCP PHASE1:Hg19::chr8:37824071..37824078,-#_9b72837bdb72ff9efe1143abbdbacba2p5@ADRB3
4.52e-50FFCP PHASE1:Hg19::chr5:24554148..24554153,+#_9b72837bdb72ff9efe1143abbdbacba2p1@ENST00000510391
4.52e-50FFCP PHASE2:Hg19::chr16:70563415..70563420,+#_9b72837bdb72ff9efe1143abbdbacba2p4@SNORD111B
4.52e-50FFCP PHASE2:Hg19::chr7:73444812..73444816,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr7:73444812..73444816, +
4.52e-50FFCP PHASE1:Hg19::chr1:86911063..86911068,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr1:86911063..86911068, +
4.52e-50FFCP PHASE2:Hg19::chr3:27750995..27750997,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr3:27750995..27750997, -
4.52e-50FFCP PHASE2:Hg19::chr1:44991346..44991355,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr1:44991346..44991355, +
4.52e-50FFCP PHASE2:Hg19::chr12:69678255..69678259,+#_9b72837bdb72ff9efe1143abbdbacba2p1@ENST00000548895
4.52e-50FFCP PHASE2:Hg19::chr5:33229308..33229311,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr5:33229308..33229311, -
4.52e-50FFCP PHASE1:Hg19::chr2:171939999..171940009,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr2:171939999..171940009, -
4.52e-50FFCP PHASE1:Hg19::chr16:66170755..66170759,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr16:66170755..66170759, -
4.52e-50FFCP PHASE1:Hg19::chr2:242742205..242742253,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr2:242742205..242742253, +
4.52e-50FFCP PHASE1:Hg19::chr1:203036812..203036840,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr1:203036812..203036840, +
4.52e-50FFCP PHASE2:Hg19::chr7:91509972..91509984,-#_9b72837bdb72ff9efe1143abbdbacba2p3@MTERF
4.52e-50FFCP PHASE1:Hg19::chr7:88535666..88535671,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr7:88535666..88535671, +
4.52e-50FFCP PHASE2:Hg19::chr1:66713214..66713221,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr1:66713214..66713221, +
4.52e-50FFCP PHASE1:Hg19::chr1:44991346..44991355,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr1:44991346..44991355, +
4.52e-50FFCP PHASE2:Hg19::chr12:78359873..78359882,+#_9b72837bdb72ff9efe1143abbdbacba2p41@NAV3
4.52e-50FFCP PHASE1:Hg19::chr5:126962527..126962529,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr5:126962527..126962529, -
4.52e-50FFCP PHASE1:Hg19::chr1:66713214..66713221,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr1:66713214..66713221, +
4.52e-50FFCP PHASE2:Hg19::chr3:193615743..193615750,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr3:193615743..193615750, -
4.52e-50FFCP PHASE2:Hg19::chr14:68527802..68527806,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr14:68527802..68527806, +
4.52e-50FFCP PHASE1:Hg19::chr2:97626726..97626741,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr2:97626726..97626741, +
4.52e-50FFCP PHASE2:Hg19::chr1:1361494..1361497,+#_9b72837bdb72ff9efe1143abbdbacba2p7@TMEM88B
4.52e-50FFCP PHASE1:Hg19::chr16:51174920..51174928,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr16:51174920..51174928, -
4.52e-50FFCP PHASE1:Hg19::chr14:37227792..37227796,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr14:37227792..37227796, -
4.52e-50FFCP PHASE1:Hg19::chr9:79519652..79519664,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr9:79519652..79519664, -
4.52e-50FFCP PHASE2:Hg19::chr8:37824071..37824078,-#_9b72837bdb72ff9efe1143abbdbacba2p5@ADRB3

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