UBERON:0005284: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0005284
|name=brain vasculature
|namespace=
|def="A vasculature that is part of a brain [Obol]." [OBOL:automatic]
|xref=EFO:0003491;;FMA:242007;;TAO:0...") |
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|part_of=UBERON:0000955 | |part_of=UBERON:0000955 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
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Revision as of 17:22, 15 June 2012
Name: | brain vasculature | |
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Definition: | "A vasculature that is part of a brain [Obol]." [OBOL:automatic] | |
Xrefs: |
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Synonyms: | "vasculature of brain" EXACT [FMA:242007] | |
Subset: | vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0002200(vasculature of head),UBERON:0002616(regional part of brain),UBERON:0006876(vasculature of organ) |
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part_of: | UBERON:0000955(brain) |
Children
part of: | CL:0002590 (smooth muscle cell of the brain vasculature) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11234-116D1 (Smooth Muscle Cells - Brain Vascular, donor1)
- 11315-117D1 (Smooth Muscle Cells - Brain Vascular, donor2)
- 11391-118C5 (Smooth Muscle Cells - Brain Vascular, donor3)
- 11492-119E7 (Fibroblast - Choroid Plexus, donor1)
- 11572-120E6 (Fibroblast - Choroid Plexus, donor2)
- 11653-122E6 (Fibroblast - Choroid Plexus, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005284 (brain vasculature), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data