UBERON:0005866: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0005866
|name=pre-cartilage condensation
|namespace=
|def="A closely packed aggregation of mesenchymal cells just prior to their differentiation into e...") |
No edit summary |
||
| Line 21: | Line 21: | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |||
|preceded_by= | |||
}} | }} | ||
Revision as of 17:23, 15 June 2012
| Name: | pre-cartilage condensation | ||
|---|---|---|---|
| Definition: | "A closely packed aggregation of mesenchymal cells just prior to their differentiation into embryonic cartilage." [1] | ||
| Xrefs: |
|
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0005856(developing mesenchymal condensation) |
|---|
Children
| is a: | UBERON:0010349 (otic capsule pre-cartilage condensation),UBERON:0010882 (limb bone pre-cartilage condensation),UBERON:0010886 (hindlimb bone pre-cartilage condensation),UBERON:0011095 (vertebra pre-cartilage condensation) |
|---|---|
| develops from: | UBERON:0005863 (cartilaginous condensation) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005866 (pre-cartilage condensation), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.25e-162 | FFCP PHASE1:Hg19::chr3:174737010..174737023,+#_73900a9c2c5738e0344c84ed3dad2680 | p@chr3:174737010..174737023, + |
| 1.25e-162 | FFCP PHASE2:Hg19::chr3:174737010..174737023,+#_73900a9c2c5738e0344c84ed3dad2680 | p@chr3:174737010..174737023, + |
| 3.92e-140 | FFCP PHASE1:Hg19::chr20:21687193..21687206,+#_2b0de687050566a409ab35a62e72d1e0 | p4@PAX1 |
| 3.92e-140 | FFCP PHASE2:Hg19::chr20:21687193..21687206,+#_2b0de687050566a409ab35a62e72d1e0 | p4@PAX1 |
| 4.22e-99 | FFCP PHASE1:Hg19::chr5:30104176..30104187,-#_07368171f53d0508eec9b2cd7755b7ef | p@chr5:30104176..30104187, - |
| 4.22e-99 | FFCP PHASE2:Hg19::chr5:30104176..30104187,-#_07368171f53d0508eec9b2cd7755b7ef | p@chr5:30104176..30104187, - |
| 1.06e-78 | FFCP PHASE2:Hg19::chr4:13546130..13546145,-#_865fc49cd5c12390b96aac0b5e4ad5d9 | p4@NKX3-2 |
| 1.06e-78 | FFCP PHASE1:Hg19::chr4:13546130..13546145,-#_865fc49cd5c12390b96aac0b5e4ad5d9 | p4@NKX3-2 |
| 2.52e-71 | FFCP PHASE1:Hg19::chr9:114135497..114135526,-#_57497237141d6c99eb91f0efdda58072 | p@chr9:114135497..114135526, - |
| 2.52e-71 | FFCP PHASE2:Hg19::chr9:114135497..114135526,-#_57497237141d6c99eb91f0efdda58072 | p@chr9:114135497..114135526, - |
| 7.4e-71 | FFCP PHASE1:Hg19::chr2:241897125..241897142,-#_13431131ded31b46122dd2e2d0d82847 | p@chr2:241897125..241897142, - |
| 7.4e-71 | FFCP PHASE2:Hg19::chr2:241897125..241897142,-#_13431131ded31b46122dd2e2d0d82847 | p@chr2:241897125..241897142, - |
| 6.33e-70 | FFCP PHASE1:Hg19::chr3:80727046..80727051,-#_7cf779333dd9008ae9a9facc825a6ed6 | p@chr3:80727046..80727051, - |
| 6.33e-70 | FFCP PHASE2:Hg19::chr3:80727046..80727051,-#_7cf779333dd9008ae9a9facc825a6ed6 | p@chr3:80727046..80727051, - |
| 4.8e-67 | FFCP PHASE2:Hg19::chr2:242004292..242004308,+#_aa430c7c351f16f460becee5b0d3856e | p15@SNED1 |
| 4.8e-67 | FFCP PHASE1:Hg19::chr2:242004292..242004308,+#_aa430c7c351f16f460becee5b0d3856e | p15@SNED1 |
| 1.24e-66 | FFCP PHASE1:Hg19::chr1:19811132..19811155,-#_1f155b7d07e2bcbcdd628313e7016369 | p20@CAPZB |
| 1.24e-66 | FFCP PHASE2:Hg19::chr1:19811132..19811155,-#_1f155b7d07e2bcbcdd628313e7016369 | p20@CAPZB |
| 1.26e-62 | FFCP PHASE1:Hg19::chr1:19778678..19778689,-#_b44bc85d1d9445f5b66d308e3f0aa3a2 | p@chr1:19778678..19778689, - |
| 1.26e-62 | FFCP PHASE2:Hg19::chr1:19778678..19778689,-#_b44bc85d1d9445f5b66d308e3f0aa3a2 | p@chr1:19778678..19778689, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr2:241897189..241897221,-#_1ae6f5804130f960959ce3696c79259d | p@chr2:241897189..241897221, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr2:241897189..241897221,-#_1ae6f5804130f960959ce3696c79259d | p@chr2:241897189..241897221, - |
| 1.55e-57 | FFCP PHASE1:Hg19::chr14:23574186..23574212,-#_cf371935b8371b0a4c1edd81cc5ce812 | p1@uc010aki.1 |
| 1.55e-57 | FFCP PHASE2:Hg19::chr14:23574186..23574212,-#_cf371935b8371b0a4c1edd81cc5ce812 | p1@uc010aki.1 |
| 4.09e-56 | FFCP PHASE1:Hg19::chr14:61190754..61190776,-#_e52cbab001db57bd1032f479f0114f69 | p6@SIX4 |
| 4.09e-56 | FFCP PHASE2:Hg19::chr14:61190754..61190776,-#_e52cbab001db57bd1032f479f0114f69 | p6@SIX4 |
| 3.74e-53 | FFCP PHASE2:Hg19::chr14:23574164..23574179,-#_e998ba3141b246c3edfea51deeac5545 | p3@uc010aki.1 |
| 3.74e-53 | FFCP PHASE1:Hg19::chr14:23574164..23574179,-#_e998ba3141b246c3edfea51deeac5545 | p3@uc010aki.1 |
| 1.15e-51 | FFCP PHASE1:Hg19::chr20:21687260..21687270,+#_971216dac47a0e857b38950e06c33f75 | p3@PAX1 |
| 1.15e-51 | FFCP PHASE2:Hg19::chr20:21687260..21687270,+#_971216dac47a0e857b38950e06c33f75 | p3@PAX1 |
| 2.3e-51 | FFCP PHASE2:Hg19::chr10:81923378..81923389,-#_fba3f3db663daf9094f09c9de38d09fd | p@chr10:81923378..81923389, - |
| 2.3e-51 | FFCP PHASE1:Hg19::chr10:81923378..81923389,-#_fba3f3db663daf9094f09c9de38d09fd | p@chr10:81923378..81923389, - |
| 3.24e-51 | FFCP PHASE1:Hg19::chr2:12248310..12248334,-#_edcdfce066744d61ff8f1d234c309b0d | p@chr2:12248310..12248334, - |
| 3.24e-51 | FFCP PHASE2:Hg19::chr2:12248310..12248334,-#_edcdfce066744d61ff8f1d234c309b0d | p@chr2:12248310..12248334, - |
| 8.0e-51 | FFCP PHASE1:Hg19::chr7:18832913..18832946,+#_f3c81e32a7d2ce34762da6060d04c202 | p19@HDAC9 |
| 8.0e-51 | FFCP PHASE2:Hg19::chr7:18832913..18832946,+#_f3c81e32a7d2ce34762da6060d04c202 | p19@HDAC9 |
| 5.06e-49 | FFCP PHASE1:Hg19::chr7:158224707..158224729,-#_96854618ce51acd9a30b35a350686bbe | p@chr7:158224707..158224729, - |
| 5.06e-49 | FFCP PHASE2:Hg19::chr7:158224707..158224729,-#_96854618ce51acd9a30b35a350686bbe | p@chr7:158224707..158224729, - |
| 5.24e-48 | FFCP PHASE1:Hg19::chr1:65888177..65888194,+#_d8cc5e40c6f80488f9d6d096eed06845 | p@chr1:65888177..65888194, + |
| 5.24e-48 | FFCP PHASE2:Hg19::chr1:65888177..65888194,+#_d8cc5e40c6f80488f9d6d096eed06845 | p@chr1:65888177..65888194, + |
| 2.98e-45 | FFCP PHASE2:Hg19::chr4:13546583..13546593,-#_2fd7f2eca9842248b0e78fa03783791e | p3@NKX3-2 |
| 2.98e-45 | FFCP PHASE1:Hg19::chr4:13546583..13546593,-#_2fd7f2eca9842248b0e78fa03783791e | p3@NKX3-2 |
| 2.92e-44 | FFCP PHASE1:Hg19::chr1:78695274..78695292,+#_b3c85fea8825688195f3aba58da61a23 | p1@MGC27382 |
| 2.92e-44 | FFCP PHASE2:Hg19::chr1:78695274..78695292,+#_b3c85fea8825688195f3aba58da61a23 | p1@MGC27382 |
| 5.38e-44 | FFCP PHASE2:Mm9::chr1:24217213..24217226,+#_021d67a6b0e73ace9cee5d2936ae9539 | p@chr1:24217213..24217226, + |
| 5.38e-44 | FFCP PHASE1:Mm9::chr1:24217213..24217226,+#_021d67a6b0e73ace9cee5d2936ae9539 | p@chr1:24217213..24217226, + |
| 1.71e-43 | FFCP PHASE1:Hg19::chr7:18832834..18832859,+#_1b318f08ba92d4e3978311369d00ab6a | p18@HDAC9 |
| 1.71e-43 | FFCP PHASE2:Hg19::chr7:18832834..18832859,+#_1b318f08ba92d4e3978311369d00ab6a | p18@HDAC9 |
| 1.48e-40 | FFCP PHASE1:Hg19::chr9:33028063..33028067,-#_3d08e6b4520d5f10d6b70657a91620cc | p@chr9:33028063..33028067, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr9:33028063..33028067,-#_3d08e6b4520d5f10d6b70657a91620cc | p@chr9:33028063..33028067, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr13:24914614..24914622,-#_3d08e6b4520d5f10d6b70657a91620cc | p@chr13:24914614..24914622, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr13:24914614..24914622,-#_3d08e6b4520d5f10d6b70657a91620cc | p@chr13:24914614..24914622, - |
| 1.64e-40 | FFCP PHASE2:Hg19::chr20:21686317..21686350,+#_2ed4ae431a18e0bbe7e212b69b46ec0d | p1@PAX1 |
| 1.64e-40 | FFCP PHASE1:Hg19::chr20:21686317..21686350,+#_2ed4ae431a18e0bbe7e212b69b46ec0d | p1@PAX1 |
| 1.81e-40 | FFCP PHASE1:Hg19::chr1:78769549..78769554,+#_90952361378b3c2fb595b5201d29e1ee | p5@PTGFR |
| 1.81e-40 | FFCP PHASE2:Hg19::chr1:78769549..78769554,+#_90952361378b3c2fb595b5201d29e1ee | p5@PTGFR |
| 2.13e-40 | FFCP PHASE1:Hg19::chr2:241897363..241897398,+#_baf82e498c04e3e64750059112b729eb | p@chr2:241897363..241897398, + |
| 2.13e-40 | FFCP PHASE2:Hg19::chr2:241897363..241897398,+#_baf82e498c04e3e64750059112b729eb | p@chr2:241897363..241897398, + |
| 3.04e-39 | FFCP PHASE1:Hg19::chr20:21686290..21686311,+#_c24261532dba0be39b2d2c3c8168b601 | p2@PAX1 |
| 3.04e-39 | FFCP PHASE2:Hg19::chr20:21686290..21686311,+#_c24261532dba0be39b2d2c3c8168b601 | p2@PAX1 |
| 7.19e-39 | FFCP PHASE1:Hg19::chr7:18832759..18832786,+#_79ff2e47f7be9d97d3869fbf3cbe7082 | p16@HDAC9 |
| 7.19e-39 | FFCP PHASE2:Hg19::chr7:18832759..18832786,+#_79ff2e47f7be9d97d3869fbf3cbe7082 | p16@HDAC9 |
| 7.19e-39 | FFCP PHASE1:Hg19::chr5:140887761..140887777,+#_79ff2e47f7be9d97d3869fbf3cbe7082 | p@chr5:140887761..140887777, + |
| 7.19e-39 | FFCP PHASE2:Hg19::chr5:140887761..140887777,+#_79ff2e47f7be9d97d3869fbf3cbe7082 | p@chr5:140887761..140887777, + |
| 1.24e-38 | FFCP PHASE2:Hg19::chr4:77068930..77068959,-#_1dc783186b2bc1435555bfe327e98c15 | p4@NUP54 |
| 1.24e-38 | FFCP PHASE1:Hg19::chr4:77068930..77068959,-#_1dc783186b2bc1435555bfe327e98c15 | p4@NUP54 |
| 2.08e-38 | FFCP PHASE1:Hg19::chr2:241938405..241938416,+#_76b73905557e560484c61850baf3176f | p@chr2:241938405..241938416, + |
| 2.08e-38 | FFCP PHASE2:Hg19::chr2:241938405..241938416,+#_76b73905557e560484c61850baf3176f | p@chr2:241938405..241938416, + |
| 3.34e-38 | FFCP PHASE2:Hg19::chr4:13546632..13546662,-#_fdc98642e4b9ac72765cb6ac30a8244e | p1@NKX3-2 |
| 3.34e-38 | FFCP PHASE1:Hg19::chr4:13546632..13546662,-#_fdc98642e4b9ac72765cb6ac30a8244e | p1@NKX3-2 |
| 3.68e-38 | FFCP PHASE1:Hg19::chr6:158490457..158490470,+#_5fe1e5c72a1a53c230a166c9a1b54e45 | p10@SYNJ2 |
| 3.68e-38 | FFCP PHASE2:Hg19::chr6:158490457..158490470,+#_5fe1e5c72a1a53c230a166c9a1b54e45 | p10@SYNJ2 |
| 5.39e-38 | FFCP PHASE1:Hg19::chr9:16138889..16138902,-#_c7646940ee5c85c8b4fdc9443890d7ea | p@chr9:16138889..16138902, - |
| 5.39e-38 | FFCP PHASE2:Hg19::chr9:16138889..16138902,-#_c7646940ee5c85c8b4fdc9443890d7ea | p@chr9:16138889..16138902, - |
| 8.66e-38 | FFCP PHASE2:Hg19::chr8:78311303..78311320,+#_1a1e4e80a05b983c8f15c4ca35b56cc8 | p2@ENST00000518706 |
| 8.66e-38 | FFCP PHASE1:Hg19::chr8:78311303..78311320,+#_1a1e4e80a05b983c8f15c4ca35b56cc8 | p2@ENST00000518706 |
| 2.96e-37 | FFCP PHASE2:Hg19::chr21:39705383..39705394,-#_130c49aa5e33f908b2eed7c3ac09e8ae | p1@ENST00000436845 |
| 2.96e-37 | FFCP PHASE1:Hg19::chr21:39705383..39705394,-#_130c49aa5e33f908b2eed7c3ac09e8ae | p1@ENST00000436845 |
| 6.92e-37 | FFCP PHASE1:Hg19::chr9:123239747..123239765,-#_7d7931b33d82482412c8c9f07ed07c1a | p12@CDK5RAP2 |
| 6.92e-37 | FFCP PHASE2:Hg19::chr9:123239747..123239765,-#_7d7931b33d82482412c8c9f07ed07c1a | p12@CDK5RAP2 |
| 3.28e-36 | FFCP PHASE1:Hg19::chr1:78695298..78695311,+#_d1a0bd5987ca5bee00d9af29aff5fd2d | p1@ENST00000413519 |
| 3.28e-36 | FFCP PHASE2:Hg19::chr1:78695298..78695311,+#_d1a0bd5987ca5bee00d9af29aff5fd2d | p1@ENST00000413519 |
| 9.62e-35 | FFCP PHASE1:Hg19::chr14:37126814..37126834,+#_05ebd8e6e128b3b3e2a97041d3cade3d | p4@PAX9 |
| 9.62e-35 | FFCP PHASE2:Hg19::chr14:37126814..37126834,+#_05ebd8e6e128b3b3e2a97041d3cade3d | p4@PAX9 |
| 1.8e-34 | FFCP PHASE1:Hg19::chr7:100202784..100202796,-#_e9358b07626c117cc8fb7cd434aa614c | p@chr7:100202784..100202796, - |
| 1.8e-34 | FFCP PHASE2:Hg19::chr7:100202784..100202796,-#_e9358b07626c117cc8fb7cd434aa614c | p@chr7:100202784..100202796, - |
| 3.69e-34 | FFCP PHASE2:Hg19::chr12:54422268..54422278,+#_6ef36d8fcc878153b95ca5f3cd26f7f3 | p8@HOXC6 |
| 3.69e-34 | FFCP PHASE1:Hg19::chr12:54422268..54422278,+#_6ef36d8fcc878153b95ca5f3cd26f7f3 | p8@HOXC6 |
| 5.52e-34 | FFCP PHASE1:Hg19::chr11:60610073..60610090,+#_7a84ebcb434337cdbfd3f7fae06c9621 | p6@CCDC86 |
| 5.52e-34 | FFCP PHASE2:Hg19::chr11:60610073..60610090,+#_7a84ebcb434337cdbfd3f7fae06c9621 | p6@CCDC86 |
| 1.43e-33 | FFCP PHASE1:Hg19::chr20:21695435..21695452,+#_318e8faa251514f603de4953b28fc6e5 | p@chr20:21695435..21695452, + |
| 1.43e-33 | FFCP PHASE2:Hg19::chr20:21695435..21695452,+#_318e8faa251514f603de4953b28fc6e5 | p@chr20:21695435..21695452, + |
| 2.03e-33 | FFCP PHASE2:Mm9::chr15:78817557..78817567,+#_656d9e710202c11e5f03f95012977c49 | p@chr15:78817557..78817567, + |
| 2.03e-33 | FFCP PHASE1:Mm9::chr15:78817557..78817567,+#_656d9e710202c11e5f03f95012977c49 | p@chr15:78817557..78817567, + |
| 3.37e-33 | FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_0c29bc030c0d47fa9fcd0e13038ae106 | p26@Myo18a |
| 3.37e-33 | FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_0c29bc030c0d47fa9fcd0e13038ae106 | p26@Myo18a |
| 4.33e-33 | FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_f4d8849d31c7429ed66c621519a205c9 | p@chr9:21934585..21934591, - |
| 4.33e-33 | FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_f4d8849d31c7429ed66c621519a205c9 | p@chr2:32482372..32482381, + |
| 4.33e-33 | FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_f4d8849d31c7429ed66c621519a205c9 | p@chr8:75097542..75097549, + |
| 4.33e-33 | FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_f4d8849d31c7429ed66c621519a205c9 | p@chr9:21934585..21934591, - |
