UBERON:0006562: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0006562
|name=pharynx
|namespace=
|def="The pharynx is the part of the digestive system immediately posterior to the mouth[GO]." [GO:0060465]
|xref=AA...") |
No edit summary |
||
Line 21: | Line 21: | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |||
|preceded_by= | |||
}} | }} |
Revision as of 17:24, 15 June 2012
Name: | pharynx | |
---|---|---|
Definition: | "The pharynx is the part of the digestive system immediately posterior to the mouth[GO]." [GO:0060465] | |
Xrefs: |
| |
Comments: | Taxon notes: This is a dubious grouping class that collects structures as diverse as the chordate pharynx (which is a subclass - UBERON:0001042) and the nematode pharynx. This portion of the ontology should be revised, but this should be done in sync with GO, from which this grouping arises | |
Subset: |
grouping_class uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0004921(subdivision of digestive tract) |
---|
Children
is a: | UBERON:0001042 (chordate pharynx) |
---|---|
derives from: | FF:0100819 (pharyngeal cell line sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10047-101G2 (tonsil, adult, pool1)
- 10723-110A3 (pharyngeal carcinoma cell line:Detroit 562)
- 10724-110A4
- 10733-110B4
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006562 (pharynx), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data