CL:0000071: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{CL
|id=CL:0000071
|name=blood vessel endothelial cell
|namespace=cell
|def="An endothelial cell that lines the vasculature." [GOC:tfm]
|xref=
|is_a=CL:0000076;;CL:0002...") |
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|id=CL:0000071 | |id=CL:0000071 | ||
|name=blood vessel endothelial cell | |name=blood vessel endothelial cell | ||
|namespace= | |namespace=efo | ||
|def="An endothelial cell that lines the vasculature." [GOC:tfm] | |def="An endothelial cell that lines the vasculature." [GOC:tfm] | ||
|xref= | |xref= | ||
|is_a=CL:0000076;;CL:0002139 | |is_a=CL:0000076;;CL:0000115;;CL:0002139 | ||
|synonym=" | |synonym="cuboidal endothelial cell of vascular tree" EXACT [] | ||
|comment= | |comment= | ||
|alt_id= | |alt_id= | ||
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|located_in= | |located_in= | ||
|part_of=UBERON:0004638 | |part_of=UBERON:0004638 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.obo.owl | |||
|is_obsolete= | |||
|preceded_by= | |||
}} | }} | ||
Revision as of 17:36, 15 June 2012
| Name: | blood vessel endothelial cell |
|---|---|
| Namespace: | efo |
| Definition: | "An endothelial cell that lines the vasculature." [GOC:tfm] |
| Synonyms: | "cuboidal endothelial cell of vascular tree" EXACT [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000076(squamous epithelial cell),CL:0000115(endothelial cell),CL:0002139(endothelial cell of vascular tree) |
|---|---|
| develops_from: | CL:0002546(embryonic blood vessel endothelial progenitor cell) |
| part_of: | UBERON:0004638(blood vessel endothelium) |
Children
| is a: | CL:0002144 (capillary endothelial cell),CL:0002543 (vein endothelial cell),CL:0002585 (retinal blood vessel endothelial cell),CL:1000413 (endothelial cell of artery) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11207-116A1 (Endothelial Cells - Aortic, donor0)
- 11243-116E1 (Endothelial Cells - Umbilical vein, donor1)
- 11263-116G3 (Endothelial Cells - Aortic, donor1)
- 11264-116G4 (Endothelial Cells - Artery, donor1)
- 11265-116G5 (Endothelial Cells - Microvascular, donor1)
- 11266-116G6 (Endothelial Cells - Thoracic, donor1)
- 11267-116G7 (Endothelial Cells - Vein, donor1)
- 11324-117E1 (Endothelial Cells - Umbilical vein, donor2)
- 11340-117F8 (Endothelial Cells - Aortic, donor2)
- 11341-117F9 (Endothelial Cells - Artery, donor2)
... further results Mouse (Mus musculus)
- 11207-116A1 (Endothelial Cells - Aortic, donor0)
- 11243-116E1 (Endothelial Cells - Umbilical vein, donor1)
- 11263-116G3 (Endothelial Cells - Aortic, donor1)
- 11264-116G4 (Endothelial Cells - Artery, donor1)
- 11265-116G5 (Endothelial Cells - Microvascular, donor1)
- 11266-116G6 (Endothelial Cells - Thoracic, donor1)
- 11267-116G7 (Endothelial Cells - Vein, donor1)
- 11324-117E1 (Endothelial Cells - Umbilical vein, donor2)
- 11340-117F8 (Endothelial Cells - Aortic, donor2)
- 11341-117F9 (Endothelial Cells - Artery, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000071 (blood vessel endothelial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
