CL:0000120: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{CL
|id=CL:0000120
|name=granule cell
|namespace=cell
|def=
|xref=BTO:0003393
|is_a=CL:0000117
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Revision as of 17:36, 15 June 2012
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000117(CNS neuron (sensu Vertebrata)) |
|---|
Children
| is a: | CL:0001031 (cerebellar granule cell) |
|---|---|
| derives from: | FF:0000108 (mouse granule cell sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11495-119F1
- 11575-120E9
- 11636-122C7 (Mouse Granule cells, donor3)
- 11656-122E9
- 11713-123C3 (Mouse Granule cells, donor1)
- 11731-123E3 (Mouse Granule cells, donor2)
- 13532-145G4 (cerebellar granule cells, embryo E13, biol_rep1 (E13R1))
- 13533-145G5 (cerebellar granule cells, embryo E13, biol_rep2 (E13R2))
- 13534-145G6 (cerebellar granule cells, embryo E13, biol_rep3 (E13R3))
- 13535-145G7 (cerebellar granule cells, embryo E15, biol_rep1 (E15R1))
... further results Mouse (Mus musculus)
- 11495-119F1
- 11575-120E9
- 11636-122C7 (Mouse Granule cells, donor3)
- 11656-122E9
- 11713-123C3 (Mouse Granule cells, donor1)
- 11731-123E3 (Mouse Granule cells, donor2)
- 13532-145G4 (cerebellar granule cells, embryo E13, biol_rep1 (E13R1))
- 13533-145G5 (cerebellar granule cells, embryo E13, biol_rep2 (E13R2))
- 13534-145G6 (cerebellar granule cells, embryo E13, biol_rep3 (E13R3))
- 13535-145G7 (cerebellar granule cells, embryo E15, biol_rep1 (E15R1))
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000120 (granule cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
