CL:0000148: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{CL
|id=CL:0000148
|name=melanocyte
|namespace=cell
|def="A pigment cell derived from the neural crest. Contains melanin-filled pigment granules, which gives a brown to b...") |
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|id=CL:0000148 | |id=CL:0000148 | ||
|name=melanocyte | |name=melanocyte | ||
|namespace= | |namespace=efo | ||
|def="A pigment cell derived from the neural crest. Contains melanin-filled pigment granules, which gives a brown to black appearance." [SANBI:mhl] | |def="A pigment cell derived from the neural crest. Contains melanin-filled pigment granules, which gives a brown to black appearance." [SANBI:mhl] | ||
|xref=BTO:0000847;;FMA:70545 | |xref=BTO:0000847;;FMA:70545 | ||
|is_a=CL:0000147;;CL:0000710 | |is_a=CL:0000147;;CL:0000710;;EFO:0000700 | ||
|synonym="melanophore" NARROW [] | |synonym="melanophore" NARROW [] | ||
|comment= | |comment= | ||
| Line 20: | Line 20: | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.obo.owl | |||
|is_obsolete= | |||
|preceded_by= | |||
}} | }} | ||
Revision as of 17:36, 15 June 2012
| Name: | melanocyte | ||
|---|---|---|---|
| Namespace: | efo | ||
| Definition: | "A pigment cell derived from the neural crest. Contains melanin-filled pigment granules, which gives a brown to black appearance." [SANBI:mhl] | ||
| Xrefs: |
| ||
| Synonyms: | "melanophore" NARROW [] | ||
| Alt_id: | CL:0000572 |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000147(pigment cell),CL:0000710(neurecto-epithelial cell),EFO:0000700() |
|---|---|
| develops_from: | CL:0000541(melanoblast) |
Children
| is a: | CL:0002566 (dark melanocyte),CL:0002567 (light melanocyte) |
|---|---|
| derives from: | FF:0000334 (melanocytic induction sample),FF:0000730 (human melanocyte (MC) sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11274-116H5 (Melanocyte - light, donor1)
- 11351-117H1 (Melanocyte - light, donor2)
- 11423-118G1 (Melanocyte - light, donor3)
- 11502-119F8 (Melanocyte - dark, donor1)
- 11581-120F6
- 11582-120F7 (Melanocyte - dark, donor2)
- 11663-122F7 (Melanocyte - dark, donor3)
- 12627-134E8 (H9 Embryoid body cells, melanocytic induction)
- 12628-134E9 (H9 Embryoid body cells, melanocytic induction)
- 12629-134F1 (H9 Embryoid body cells, melanocytic induction)
... further results Mouse (Mus musculus)
- 11274-116H5 (Melanocyte - light, donor1)
- 11351-117H1 (Melanocyte - light, donor2)
- 11423-118G1 (Melanocyte - light, donor3)
- 11502-119F8 (Melanocyte - dark, donor1)
- 11581-120F6
- 11582-120F7 (Melanocyte - dark, donor2)
- 11663-122F7 (Melanocyte - dark, donor3)
- 12627-134E8 (H9 Embryoid body cells, melanocytic induction)
- 12628-134E9 (H9 Embryoid body cells, melanocytic induction)
- 12629-134F1 (H9 Embryoid body cells, melanocytic induction)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000148 (melanocyte), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.89e-139 | FFCP PHASE1:Hg19::chrX:9707625..9707629,-#_97e66c5549b85c7278cd400896fe47e4 | p6@GPR143 |
| 3.89e-139 | FFCP PHASE2:Hg19::chrX:9707625..9707629,-#_97e66c5549b85c7278cd400896fe47e4 | p6@GPR143 |
| 5.38e-137 | FFCP PHASE1:Hg19::chr6:4610902..4610913,+#_b5ee633eb81f31b7dae3af069b9c1a09 | p1@ENST00000380106 |
| 5.38e-137 | FFCP PHASE1:Hg19::chr9:12709332..12709345,+#_b5ee633eb81f31b7dae3af069b9c1a09 | p@chr9:12709332..12709345, + |
| 5.38e-137 | FFCP PHASE1:Hg19::chr9:12708060..12708071,-#_b5ee633eb81f31b7dae3af069b9c1a09 | p@chr9:12708060..12708071, - |
| 5.38e-137 | FFCP PHASE1:Hg19::chr1:1497497..1497523,-#_b5ee633eb81f31b7dae3af069b9c1a09 | p1@AK129493 |
| 5.38e-137 | FFCP PHASE1:Hg19::chr9:12702367..12702377,+#_b5ee633eb81f31b7dae3af069b9c1a09 | p@chr9:12702367..12702377, + |
| 5.38e-137 | FFCP PHASE2:Hg19::chr9:12708978..12708990,+#_b5ee633eb81f31b7dae3af069b9c1a09 | p@chr9:12708978..12708990, + |
| 5.38e-137 | FFCP PHASE1:Hg19::chr16:89986251..89986268,+#_b5ee633eb81f31b7dae3af069b9c1a09 | p@chr16:89986251..89986268, + |
| 5.38e-137 | FFCP PHASE2:Hg19::chr9:12695585..12695593,+#_b5ee633eb81f31b7dae3af069b9c1a09 | p24@TYRP1 |
| 5.38e-137 | FFCP PHASE1:Hg19::chr9:12693291..12693298,+#_b5ee633eb81f31b7dae3af069b9c1a09 | p33@TYRP1 |
| 5.38e-137 | FFCP PHASE2:Hg19::chr6:4610902..4610913,+#_b5ee633eb81f31b7dae3af069b9c1a09 | p1@ENST00000380106 |
| 5.38e-137 | FFCP PHASE2:Hg19::chr9:12709332..12709345,+#_b5ee633eb81f31b7dae3af069b9c1a09 | p@chr9:12709332..12709345, + |
| 5.38e-137 | FFCP PHASE1:Hg19::chr1:154401791..154401807,+#_b5ee633eb81f31b7dae3af069b9c1a09 | p11@IL6R |
| 5.38e-137 | FFCP PHASE2:Hg19::chr9:12708060..12708071,-#_b5ee633eb81f31b7dae3af069b9c1a09 | p@chr9:12708060..12708071, - |
| 5.38e-137 | FFCP PHASE2:Hg19::chr1:1497497..1497523,-#_b5ee633eb81f31b7dae3af069b9c1a09 | p1@AK129493 |
| 5.38e-137 | FFCP PHASE2:Hg19::chr9:12702367..12702377,+#_b5ee633eb81f31b7dae3af069b9c1a09 | p@chr9:12702367..12702377, + |
| 5.38e-137 | FFCP PHASE1:Hg19::chr19:3557867..3557877,-#_b5ee633eb81f31b7dae3af069b9c1a09 | p7@MFSD12 |
| 5.38e-137 | FFCP PHASE1:Hg19::chr9:12708978..12708990,+#_b5ee633eb81f31b7dae3af069b9c1a09 | p@chr9:12708978..12708990, + |
| 5.38e-137 | FFCP PHASE2:Hg19::chr16:89986251..89986268,+#_b5ee633eb81f31b7dae3af069b9c1a09 | p@chr16:89986251..89986268, + |
| 5.38e-137 | FFCP PHASE2:Hg19::chr1:154401791..154401807,+#_b5ee633eb81f31b7dae3af069b9c1a09 | p11@IL6R |
| 5.38e-137 | FFCP PHASE2:Hg19::chr9:12693291..12693298,+#_b5ee633eb81f31b7dae3af069b9c1a09 | p33@TYRP1 |
| 5.38e-137 | FFCP PHASE1:Hg19::chr9:12695585..12695593,+#_b5ee633eb81f31b7dae3af069b9c1a09 | p24@TYRP1 |
| 5.38e-137 | FFCP PHASE2:Hg19::chr19:3557867..3557877,-#_b5ee633eb81f31b7dae3af069b9c1a09 | p7@MFSD12 |
| 3.56e-120 | FFCP PHASE2:Hg19::chr19:3557918..3557927,-#_9268d0d7b6ac6d5dc43db8d4a9d3d713 | p8@MFSD12 |
| 3.56e-120 | FFCP PHASE1:Hg19::chr1:1497528..1497559,-#_9268d0d7b6ac6d5dc43db8d4a9d3d713 | p2@AK129493 |
| 3.56e-120 | FFCP PHASE2:Hg19::chr1:1497528..1497559,-#_9268d0d7b6ac6d5dc43db8d4a9d3d713 | p2@AK129493 |
| 3.56e-120 | FFCP PHASE1:Hg19::chr19:3557918..3557927,-#_9268d0d7b6ac6d5dc43db8d4a9d3d713 | p8@MFSD12 |
| 4.24e-120 | FFCP PHASE1:Hg19::chr9:12701182..12701196,+#_8d1c05573039ab914061bcac9a3c951c | p19@TYRP1 |
| 4.24e-120 | FFCP PHASE2:Hg19::chr5:159894810..159894819,+#_8d1c05573039ab914061bcac9a3c951c | p12@uc003lyl.3 |
| 4.24e-120 | FFCP PHASE2:Hg19::chr9:12704349..12704362,+#_8d1c05573039ab914061bcac9a3c951c | p@chr9:12704349..12704362, + |
| 4.24e-120 | FFCP PHASE1:Hg19::chr9:12693559..12693562,+#_8d1c05573039ab914061bcac9a3c951c | p22@TYRP1 |
| 4.24e-120 | FFCP PHASE2:Hg19::chr9:12708011..12708027,+#_8d1c05573039ab914061bcac9a3c951c | p27@TYRP1 |
| 4.24e-120 | FFCP PHASE2:Hg19::chr9:12701182..12701196,+#_8d1c05573039ab914061bcac9a3c951c | p19@TYRP1 |
| 4.24e-120 | FFCP PHASE1:Hg19::chr5:159894810..159894819,+#_8d1c05573039ab914061bcac9a3c951c | p12@uc003lyl.3 |
| 4.24e-120 | FFCP PHASE2:Hg19::chr9:12693559..12693562,+#_8d1c05573039ab914061bcac9a3c951c | p22@TYRP1 |
| 4.24e-120 | FFCP PHASE1:Hg19::chr9:12704349..12704362,+#_8d1c05573039ab914061bcac9a3c951c | p@chr9:12704349..12704362, + |
| 4.24e-120 | FFCP PHASE1:Hg19::chr9:12708011..12708027,+#_8d1c05573039ab914061bcac9a3c951c | p27@TYRP1 |
| 5.06e-120 | FFCP PHASE1:Hg19::chr9:12704539..12704547,+#_7fce9dafc771a0648a834dc520847463 | p@chr9:12704539..12704547, + |
| 5.06e-120 | FFCP PHASE2:Hg19::chr9:12704539..12704547,+#_7fce9dafc771a0648a834dc520847463 | p@chr9:12704539..12704547, + |
| 5.06e-120 | FFCP PHASE1:Hg19::chr15:28344426..28344431,-#_7fce9dafc771a0648a834dc520847463 | p2@OCA2 |
| 5.06e-120 | FFCP PHASE2:Hg19::chr15:28344426..28344431,-#_7fce9dafc771a0648a834dc520847463 | p2@OCA2 |
| 6.04e-120 | FFCP PHASE1:Hg19::chr9:12695674..12695681,+#_f8a04e9a3043341733288908852978f2 | p36@TYRP1 |
| 6.04e-120 | FFCP PHASE2:Hg19::chr9:12695674..12695681,+#_f8a04e9a3043341733288908852978f2 | p36@TYRP1 |
| 7.21e-120 | FFCP PHASE1:Hg19::chr12:56351078..56351092,-#_c32355bc9edc43477ca6baae5c4054ae | p@chr12:56351078..56351092, - |
| 7.21e-120 | FFCP PHASE2:Hg19::chr12:56351078..56351092,-#_c32355bc9edc43477ca6baae5c4054ae | p@chr12:56351078..56351092, - |
| 1.29e-117 | FFCP PHASE2:Hg19::chr1:1497566..1497576,-#_976af084a4f136a3f79b3f4dad601dd7 | p3@AK129493 |
| 1.29e-117 | FFCP PHASE1:Hg19::chr11:48066945..48066951,+#_976af084a4f136a3f79b3f4dad601dd7 | p@chr11:48066945..48066951, + |
| 1.29e-117 | FFCP PHASE1:Hg19::chr2:128400821..128400830,-#_976af084a4f136a3f79b3f4dad601dd7 | p39@LIMS2 |
| 1.29e-117 | FFCP PHASE1:Hg19::chr11:2920857..2920864,+#_976af084a4f136a3f79b3f4dad601dd7 | p13@SLC22A18 |
| 1.29e-117 | FFCP PHASE2:Hg19::chr17:77925869..77925876,-#_976af084a4f136a3f79b3f4dad601dd7 | p@chr17:77925869..77925876, - |
| 1.29e-117 | FFCP PHASE2:Hg19::chr1:212594718..212594723,+#_976af084a4f136a3f79b3f4dad601dd7 | p@chr1:212594718..212594723, + |
| 1.29e-117 | FFCP PHASE2:Hg19::chr9:12704666..12704671,+#_976af084a4f136a3f79b3f4dad601dd7 | p@chr9:12704666..12704671, + |
| 1.29e-117 | FFCP PHASE2:Hg19::chr22:20878094..20878105,+#_976af084a4f136a3f79b3f4dad601dd7 | p41@MED15 |
| 1.29e-117 | FFCP PHASE2:Hg19::chr9:12701691..12701717,+#_976af084a4f136a3f79b3f4dad601dd7 | p34@TYRP1 |
| 1.29e-117 | FFCP PHASE1:Hg19::chr19:3557800..3557811,-#_976af084a4f136a3f79b3f4dad601dd7 | p9@MFSD12 |
| 1.29e-117 | FFCP PHASE2:Hg19::chr6:4610888..4610895,+#_976af084a4f136a3f79b3f4dad601dd7 | p2@ENST00000380106 |
| 1.29e-117 | FFCP PHASE1:Hg19::chr9:12709019..12709029,+#_976af084a4f136a3f79b3f4dad601dd7 | p@chr9:12709019..12709029, + |
| 1.29e-117 | FFCP PHASE2:Hg19::chr17:77923816..77923828,-#_976af084a4f136a3f79b3f4dad601dd7 | p@chr17:77923816..77923828, - |
| 1.29e-117 | FFCP PHASE2:Hg19::chr9:12709200..12709209,+#_976af084a4f136a3f79b3f4dad601dd7 | p@chr9:12709200..12709209, + |
| 1.29e-117 | FFCP PHASE2:Hg19::chr3:69951861..69951868,+#_976af084a4f136a3f79b3f4dad601dd7 | p@chr3:69951861..69951868, + |
| 1.29e-117 | FFCP PHASE2:Hg19::chr1:1497446..1497455,-#_976af084a4f136a3f79b3f4dad601dd7 | p4@AK129493 |
| 1.29e-117 | FFCP PHASE1:Hg19::chr15:28360793..28360804,-#_976af084a4f136a3f79b3f4dad601dd7 | p@chr15:28360793..28360804, - |
| 1.29e-117 | FFCP PHASE2:Hg19::chr19:3557800..3557811,-#_976af084a4f136a3f79b3f4dad601dd7 | p9@MFSD12 |
| 1.29e-117 | FFCP PHASE2:Hg19::chr11:48066945..48066951,+#_976af084a4f136a3f79b3f4dad601dd7 | p@chr11:48066945..48066951, + |
| 1.29e-117 | FFCP PHASE2:Hg19::chr15:28360793..28360804,-#_976af084a4f136a3f79b3f4dad601dd7 | p@chr15:28360793..28360804, - |
| 1.29e-117 | FFCP PHASE2:Hg19::chr11:2920857..2920864,+#_976af084a4f136a3f79b3f4dad601dd7 | p13@SLC22A18 |
| 1.29e-117 | FFCP PHASE2:Hg19::chr2:128400821..128400830,-#_976af084a4f136a3f79b3f4dad601dd7 | p39@LIMS2 |
| 1.29e-117 | FFCP PHASE1:Hg19::chr1:1497566..1497576,-#_976af084a4f136a3f79b3f4dad601dd7 | p3@AK129493 |
| 1.29e-117 | FFCP PHASE1:Hg19::chr15:28360857..28360860,-#_976af084a4f136a3f79b3f4dad601dd7 | p@chr15:28360857..28360860, - |
| 1.29e-117 | FFCP PHASE2:Hg19::chr9:12709019..12709029,+#_976af084a4f136a3f79b3f4dad601dd7 | p@chr9:12709019..12709029, + |
| 1.29e-117 | FFCP PHASE1:Hg19::chr17:77925869..77925876,-#_976af084a4f136a3f79b3f4dad601dd7 | p@chr17:77925869..77925876, - |
| 1.29e-117 | FFCP PHASE1:Hg19::chr15:42694665..42694671,+#_976af084a4f136a3f79b3f4dad601dd7 | p16@CAPN3 |
| 1.29e-117 | FFCP PHASE1:Hg19::chr1:212594718..212594723,+#_976af084a4f136a3f79b3f4dad601dd7 | p@chr1:212594718..212594723, + |
| 1.29e-117 | FFCP PHASE1:Hg19::chr9:12704666..12704671,+#_976af084a4f136a3f79b3f4dad601dd7 | p@chr9:12704666..12704671, + |
| 1.29e-117 | FFCP PHASE1:Hg19::chr22:20878094..20878105,+#_976af084a4f136a3f79b3f4dad601dd7 | p41@MED15 |
| 1.29e-117 | FFCP PHASE1:Hg19::chr9:12701691..12701717,+#_976af084a4f136a3f79b3f4dad601dd7 | p34@TYRP1 |
| 1.29e-117 | FFCP PHASE2:Hg19::chr15:28360857..28360860,-#_976af084a4f136a3f79b3f4dad601dd7 | p@chr15:28360857..28360860, - |
| 1.29e-117 | FFCP PHASE2:Hg19::chr15:42694665..42694671,+#_976af084a4f136a3f79b3f4dad601dd7 | p16@CAPN3 |
| 1.29e-117 | FFCP PHASE1:Hg19::chr6:4610888..4610895,+#_976af084a4f136a3f79b3f4dad601dd7 | p2@ENST00000380106 |
| 1.29e-117 | FFCP PHASE1:Hg19::chr17:77923816..77923828,-#_976af084a4f136a3f79b3f4dad601dd7 | p@chr17:77923816..77923828, - |
| 1.29e-117 | FFCP PHASE1:Hg19::chr9:12709200..12709209,+#_976af084a4f136a3f79b3f4dad601dd7 | p@chr9:12709200..12709209, + |
| 1.29e-117 | FFCP PHASE1:Hg19::chr3:69951861..69951868,+#_976af084a4f136a3f79b3f4dad601dd7 | p@chr3:69951861..69951868, + |
| 1.29e-117 | FFCP PHASE1:Hg19::chr1:1497446..1497455,-#_976af084a4f136a3f79b3f4dad601dd7 | p4@AK129493 |
| 4.33e-107 | FFCP PHASE1:Hg19::chr9:5892516..5892527,+#_6a1706aa24fbfcf42520a3a64527266b | p3@MLANA |
| 4.33e-107 | FFCP PHASE1:Hg19::chr22:20878024..20878053,+#_6a1706aa24fbfcf42520a3a64527266b | p16@MED15 |
| 4.33e-107 | FFCP PHASE1:Hg19::chr17:77924675..77924686,-#_6a1706aa24fbfcf42520a3a64527266b | p3@TBC1D16 |
| 4.33e-107 | FFCP PHASE2:Hg19::chr9:12702314..12702344,+#_6a1706aa24fbfcf42520a3a64527266b | p@chr9:12702314..12702344, + |
| 4.33e-107 | FFCP PHASE2:Hg19::chr9:12698593..12698608,+#_6a1706aa24fbfcf42520a3a64527266b | p20@TYRP1 |
| 4.33e-107 | FFCP PHASE1:Hg19::chr9:12702379..12702409,+#_6a1706aa24fbfcf42520a3a64527266b | p@chr9:12702379..12702409, + |
| 4.33e-107 | FFCP PHASE2:Hg19::chr9:12694022..12694033,+#_6a1706aa24fbfcf42520a3a64527266b | p15@TYRP1 |
| 4.33e-107 | FFCP PHASE2:Hg19::chr9:5892516..5892527,+#_6a1706aa24fbfcf42520a3a64527266b | p3@MLANA |
| 4.33e-107 | FFCP PHASE2:Hg19::chr22:20878024..20878053,+#_6a1706aa24fbfcf42520a3a64527266b | p16@MED15 |
| 4.33e-107 | FFCP PHASE2:Hg19::chr17:77924675..77924686,-#_6a1706aa24fbfcf42520a3a64527266b | p3@TBC1D16 |
| 4.33e-107 | FFCP PHASE2:Hg19::chr9:12702379..12702409,+#_6a1706aa24fbfcf42520a3a64527266b | p@chr9:12702379..12702409, + |
| 4.33e-107 | FFCP PHASE1:Hg19::chr9:12694022..12694033,+#_6a1706aa24fbfcf42520a3a64527266b | p15@TYRP1 |
| 4.33e-107 | FFCP PHASE1:Hg19::chr9:12702314..12702344,+#_6a1706aa24fbfcf42520a3a64527266b | p@chr9:12702314..12702344, + |
| 4.33e-107 | FFCP PHASE1:Hg19::chr9:12698593..12698608,+#_6a1706aa24fbfcf42520a3a64527266b | p20@TYRP1 |
| 5.07e-107 | FFCP PHASE2:Hg19::chr9:12693305..12693317,+#_7daa90105e24ba7dea14f999d97c5402 | p10@TYRP1 |
| 5.07e-107 | FFCP PHASE2:Hg19::chr9:12695659..12695660,+#_7daa90105e24ba7dea14f999d97c5402 | p31@TYRP1 |
