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(Created page with "{{CL |id=CL:0000188 |name=skeletal muscle cell |namespace=cell |def="A somatic cell located in skeletal muscle." [GOC:tfm] |xref=BTO:0004392;;FMA:9727 |is_a=CL:0000187 ...")
 
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|id=CL:0000188
|id=CL:0000188
|name=skeletal muscle cell
|name=skeletal muscle cell
|namespace=cell
|namespace=efo
|def="A somatic cell located in skeletal muscle." [GOC:tfm]
|def="A somatic cell located in skeletal muscle." [GOC:tfm]
|xref=BTO:0004392;;FMA:9727
|xref=BTO:0004392;;FMA:9727
|is_a=CL:0000187
|is_a=CL:0000187;;EFO:0001949
|synonym=
|synonym=
|comment=
|comment=
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|located_in=
|located_in=
|part_of=UBERON:0001134
|part_of=UBERON:0001134
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.obo.owl
|is_obsolete=
|preceded_by=
}}
}}

Revision as of 17:36, 15 June 2012

Name:skeletal muscle cell
Namespace:efo
Definition:"A somatic cell located in skeletal muscle." [GOC:tfm]
Xrefs:
links:

BTO:0004392

FMA:9727


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000187(muscle cell),EFO:0001949()
part_of:UBERON:0001134(skeletal muscle tissue)



Children


is a:CL:0000355 (multi-potent skeletal muscle stem cell),CL:0000594 (skeletal muscle satellite cell)
derives from:FF:0000162 (human skeletal muscle cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

  • 11240-116D7 (Skeletal Muscle Satellite Cells, donor1)
  • 11281-116I3 (Skeletal Muscle Cells, donor1)
  • 11282-116I4 (Skeletal muscle cells differentiated into Myotubes - multinucleated, donor1)
  • 11321-117D7 (Skeletal Muscle Satellite Cells, donor2)
  • 11358-117H8 (Skeletal Muscle Cells, donor2)
  • 11359-117H9 (Skeletal muscle cells differentiated into Myotubes - multinucleated, donor2)
  • 11397-118D2 (Skeletal Muscle Satellite Cells, donor3)
  • 11430-118G8 (Skeletal Muscle Cells, donor3)
  • 11431-118G9 (Skeletal muscle cells differentiated into Myotubes - multinucleated, donor3)
  • 11451-119A2 (Skeletal Muscle Cells, donor4)

... further results Mouse (Mus musculus)

  • 11240-116D7 (Skeletal Muscle Satellite Cells, donor1)
  • 11281-116I3 (Skeletal Muscle Cells, donor1)
  • 11282-116I4 (Skeletal muscle cells differentiated into Myotubes - multinucleated, donor1)
  • 11321-117D7 (Skeletal Muscle Satellite Cells, donor2)
  • 11358-117H8 (Skeletal Muscle Cells, donor2)
  • 11359-117H9 (Skeletal muscle cells differentiated into Myotubes - multinucleated, donor2)
  • 11397-118D2 (Skeletal Muscle Satellite Cells, donor3)
  • 11430-118G8 (Skeletal Muscle Cells, donor3)
  • 11431-118G9 (Skeletal muscle cells differentiated into Myotubes - multinucleated, donor3)
  • 11451-119A2 (Skeletal Muscle Cells, donor4)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000188 (skeletal muscle cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
7.88e-112FFCP PHASE2:Hg19::chr11:85090268..85090294,-#_ed3eafdbb00a753c922e48bdbd8e7943p@chr11:85090268..85090294, -
7.88e-112FFCP PHASE1:Hg19::chr11:85090268..85090294,-#_ed3eafdbb00a753c922e48bdbd8e7943p@chr11:85090268..85090294, -
9.06e-79FFCP PHASE2:Hg19::chr7:81337867..81337871,+#_68aee55847fc2b7b1004b27cb1a5b4e9p@chr7:81337867..81337871, +
9.06e-79FFCP PHASE1:Hg19::chr7:81337867..81337871,+#_68aee55847fc2b7b1004b27cb1a5b4e9p@chr7:81337867..81337871, +
6.54e-72FFCP PHASE1:Hg19::chr2:208104461..208104478,+#_16009efcac4d236ba4b6c8901d6275a4p3@ENST00000430494
6.54e-72FFCP PHASE2:Hg19::chr2:208104461..208104478,+#_16009efcac4d236ba4b6c8901d6275a4p3@ENST00000430494
2.3e-68FFCP PHASE1:Hg19::chr6:169588532..169588548,-#_ddad573b76550b7b8407bd05dc1a1dc5p@chr6:169588532..169588548, -
2.3e-68FFCP PHASE2:Hg19::chr6:169588532..169588548,-#_ddad573b76550b7b8407bd05dc1a1dc5p@chr6:169588532..169588548, -
8.22e-67FFCP PHASE1:Hg19::chr2:233404395..233404408,+#_003ee43a351e0171723cff2032bec07dp2@CHRNG
8.22e-67FFCP PHASE2:Hg19::chr2:233404395..233404408,+#_003ee43a351e0171723cff2032bec07dp2@CHRNG
9.36e-60FFCP PHASE1:Hg19::chr5:53776469..53776484,+#_5b5f8c6afc351e80250653029dd91665p@chr5:53776469..53776484, +
9.36e-60FFCP PHASE2:Hg19::chr5:53776469..53776484,+#_5b5f8c6afc351e80250653029dd91665p@chr5:53776469..53776484, +
1.0e-58FFCP PHASE1:Hg19::chr9:23769271..23769295,-#_950a973f8ae29905c4d696100102b297p@chr9:23769271..23769295, -
1.0e-58FFCP PHASE2:Hg19::chr9:23769271..23769295,-#_950a973f8ae29905c4d696100102b297p@chr9:23769271..23769295, -
1.17e-58FFCP PHASE1:Hg19::chr16:70732811..70732824,-#_ac066e25ed3330fe9b699f80f957da5fp@chr16:70732811..70732824, -
1.17e-58FFCP PHASE2:Hg19::chr16:70732811..70732824,-#_ac066e25ed3330fe9b699f80f957da5fp@chr16:70732811..70732824, -
5.23e-58FFCP PHASE1:Hg19::chr16:89238212..89238224,+#_8f13a5239fd7b8968cb0e35938c01b79p2@CDH15
5.23e-58FFCP PHASE2:Hg19::chr16:89238212..89238224,+#_8f13a5239fd7b8968cb0e35938c01b79p2@CDH15
6.02e-55FFCP PHASE1:Hg19::chr8:144874971..144874988,-#_d390e5c0ed2ff9b0ebcfcdc7f65c9acbp@chr8:144874971..144874988, -
6.02e-55FFCP PHASE2:Hg19::chr8:144874971..144874988,-#_d390e5c0ed2ff9b0ebcfcdc7f65c9acbp@chr8:144874971..144874988, -
1.18e-51FFCP PHASE2:Hg19::chr9:136390071..136390087,-#_b62cecf948382ac4e07fdfae40522dd7p1@TMEM8C
1.18e-51FFCP PHASE1:Hg19::chr9:136390071..136390087,-#_b62cecf948382ac4e07fdfae40522dd7p1@TMEM8C
2.83e-50FFCP PHASE1:Hg19::chr8:144875208..144875222,-#_0e6f2d71db548dc42268856385f26700p@chr8:144875208..144875222, -
2.83e-50FFCP PHASE2:Hg19::chr8:144875208..144875222,-#_0e6f2d71db548dc42268856385f26700p@chr8:144875208..144875222, -
9.35e-50FFCP PHASE2:Hg19::chr13:94958055..94958072,+#_36a51141737638c05e297a73051f687ep@chr13:94958055..94958072, +
9.35e-50FFCP PHASE1:Hg19::chr13:94958055..94958072,+#_36a51141737638c05e297a73051f687ep@chr13:94958055..94958072, +
9.86e-50FFCP PHASE1:Hg19::chr2:145161707..145161728,-#_0b391dad19421c8961f71edf3426a748p@chr2:145161707..145161728, -
9.86e-50FFCP PHASE2:Hg19::chr2:145161707..145161728,-#_0b391dad19421c8961f71edf3426a748p@chr2:145161707..145161728, -
1.03e-49FFCP PHASE1:Hg19::chr13:94958004..94958025,+#_a0c2530ca3b087d8fbcfeaadfb56b1dap@chr13:94958004..94958025, +
1.03e-49FFCP PHASE2:Hg19::chr13:94958004..94958025,+#_a0c2530ca3b087d8fbcfeaadfb56b1dap@chr13:94958004..94958025, +
3.29e-47FFCP PHASE2:Hg19::chr11:17741111..17741124,+#_8f4e66ebb80830865e83f6948dc814f6p1@MYOD1
3.29e-47FFCP PHASE1:Hg19::chr11:17741111..17741124,+#_8f4e66ebb80830865e83f6948dc814f6p1@MYOD1
1.14e-45FFCP PHASE1:Hg19::chr2:208104497..208104512,+#_54a8577da53262d88453874939daa281p2@ENST00000430494
1.14e-45FFCP PHASE2:Hg19::chr2:208104497..208104512,+#_54a8577da53262d88453874939daa281p2@ENST00000430494
9.75e-45FFCP PHASE1:Hg19::chr13:106582200..106582203,+#_05554db615eceaf002127053ce8f3a2bp@chr13:106582200..106582203, +
9.75e-45FFCP PHASE1:Hg19::chr11:85090324..85090329,-#_05554db615eceaf002127053ce8f3a2bp@chr11:85090324..85090329, -
9.75e-45FFCP PHASE2:Hg19::chr6:2783707..2783715,+#_05554db615eceaf002127053ce8f3a2bp2@U56249
9.75e-45FFCP PHASE2:Hg19::chr13:106582200..106582203,+#_05554db615eceaf002127053ce8f3a2bp@chr13:106582200..106582203, +
9.75e-45FFCP PHASE1:Hg19::chr9:14520447..14520460,-#_05554db615eceaf002127053ce8f3a2bp@chr9:14520447..14520460, -
9.75e-45FFCP PHASE1:Hg19::chrX:135827794..135827802,-#_05554db615eceaf002127053ce8f3a2bp@chrX:135827794..135827802, -
9.75e-45FFCP PHASE2:Hg19::chr11:17716498..17716504,+#_05554db615eceaf002127053ce8f3a2bp2@ENST00000524885
9.75e-45FFCP PHASE1:Hg19::chr11:17716498..17716504,+#_05554db615eceaf002127053ce8f3a2bp2@ENST00000524885
9.75e-45FFCP PHASE1:Hg19::chr6:2783611..2783617,+#_05554db615eceaf002127053ce8f3a2bp5@U56249
9.75e-45FFCP PHASE2:Hg19::chr9:14520447..14520460,-#_05554db615eceaf002127053ce8f3a2bp@chr9:14520447..14520460, -
9.75e-45FFCP PHASE2:Hg19::chrX:135827794..135827802,-#_05554db615eceaf002127053ce8f3a2bp@chrX:135827794..135827802, -
9.75e-45FFCP PHASE2:Hg19::chr6:2783611..2783617,+#_05554db615eceaf002127053ce8f3a2bp5@U56249
9.75e-45FFCP PHASE2:Hg19::chr11:85090324..85090329,-#_05554db615eceaf002127053ce8f3a2bp@chr11:85090324..85090329, -
9.75e-45FFCP PHASE1:Hg19::chr8:87774996..87775001,+#_05554db615eceaf002127053ce8f3a2bp@chr8:87774996..87775001, +
9.75e-45FFCP PHASE2:Hg19::chr8:87774996..87775001,+#_05554db615eceaf002127053ce8f3a2bp@chr8:87774996..87775001, +
9.75e-45FFCP PHASE1:Hg19::chr6:2783707..2783715,+#_05554db615eceaf002127053ce8f3a2bp2@U56249
2.84e-44FFCP PHASE2:Hg19::chr6:169588553..169588570,-#_f918afe45b073b55951c0e71ef5e6662p@chr6:169588553..169588570, -
2.84e-44FFCP PHASE1:Hg19::chr6:169588553..169588570,-#_f918afe45b073b55951c0e71ef5e6662p@chr6:169588553..169588570, -
3.55e-44FFCP PHASE2:Hg19::chr22:20103644..20103662,+#_4024dc1d03862784c8b53faef5907fb7p10@RANBP1
3.55e-44FFCP PHASE1:Hg19::chr22:20103644..20103662,+#_4024dc1d03862784c8b53faef5907fb7p10@RANBP1
4.57e-44FFCP PHASE1:Hg19::chr6:52001069..52001073,+#_e564fb63382632d165d5e3c9358b6cf6p@chr6:52001069..52001073, +
4.57e-44FFCP PHASE2:Hg19::chr6:52001069..52001073,+#_e564fb63382632d165d5e3c9358b6cf6p@chr6:52001069..52001073, +
1.7e-43FFCP PHASE1:Hg19::chr11:47470591..47470604,-#_3123da5e5023a7ae6c6864580f0ce6e5p4@RAPSN
1.7e-43FFCP PHASE2:Hg19::chr11:47470591..47470604,-#_3123da5e5023a7ae6c6864580f0ce6e5p4@RAPSN
1.79e-42FFCP PHASE2:Hg19::chr2:208175027..208175053,-#_68d8cfed49844ce59cabaa465321c26ep@chr2:208175027..208175053, -
1.79e-42FFCP PHASE1:Hg19::chr2:208175027..208175053,-#_68d8cfed49844ce59cabaa465321c26ep@chr2:208175027..208175053, -
3.01e-42FFCP PHASE1:Hg19::chr16:89238188..89238199,+#_46ddbe8bc5c05f52babf7a0e3075fdeap3@CDH15
3.01e-42FFCP PHASE2:Hg19::chr16:89238188..89238199,+#_46ddbe8bc5c05f52babf7a0e3075fdeap3@CDH15
1.19e-41FFCP PHASE1:Hg19::chr11:47470657..47470674,-#_3767892ab2ebc35cd197da33ea3d2049p2@RAPSN
1.19e-41FFCP PHASE2:Hg19::chr11:47470657..47470674,-#_3767892ab2ebc35cd197da33ea3d2049p2@RAPSN
1.31e-39FFCP PHASE2:Hg19::chr11:17741254..17741282,+#_abdad26377d27a83572a82605d25d088p2@MYOD1
1.31e-39FFCP PHASE1:Hg19::chr11:17741254..17741282,+#_abdad26377d27a83572a82605d25d088p2@MYOD1
1.57e-39FFCP PHASE2:Hg19::chr11:17741084..17741094,+#_66f5a2100eab5e2967c6faa5a8c55dbdp3@MYOD1
1.57e-39FFCP PHASE1:Hg19::chr11:17741084..17741094,+#_66f5a2100eab5e2967c6faa5a8c55dbdp3@MYOD1
1.8e-39FFCP PHASE2:Hg19::chr9:38414520..38414541,-#_b0df3466f4d50e61159531265e55e6c6p@chr9:38414520..38414541, -
1.8e-39FFCP PHASE1:Hg19::chr9:38414520..38414541,-#_b0df3466f4d50e61159531265e55e6c6p@chr9:38414520..38414541, -
2.42e-39FFCP PHASE1:Hg19::chr1:203052309..203052311,-#_fa5f14c45d4df404aa06d877eaf5291fp@chr1:203052309..203052311, -
2.42e-39FFCP PHASE2:Hg19::chr1:203052309..203052311,-#_fa5f14c45d4df404aa06d877eaf5291fp@chr1:203052309..203052311, -
2.64e-38FFCP PHASE1:Hg19::chr2:233404429..233404447,+#_a97f4bbf3b0b6e034f1d1cce3d690e24p1@CHRNG
2.64e-38FFCP PHASE2:Hg19::chr2:233404429..233404447,+#_a97f4bbf3b0b6e034f1d1cce3d690e24p1@CHRNG
6.67e-38FFCP PHASE2:Hg19::chr16:31225432..31225453,+#_54c37c5b57f025541991817d8a475509p2@TRIM72
6.67e-38FFCP PHASE1:Hg19::chr16:31225432..31225453,+#_54c37c5b57f025541991817d8a475509p2@TRIM72
4.17e-35FFCP PHASE1:Hg19::chr16:31225461..31225498,+#_44ca4222d79ec8e5f7b042264a9c0d80p1@TRIM72
4.17e-35FFCP PHASE2:Hg19::chr16:31225461..31225498,+#_44ca4222d79ec8e5f7b042264a9c0d80p1@TRIM72
4.98e-34FFCP PHASE2:Hg19::chr17:10560619..10560631,-#_6e8dba20ec332b7fb427468feb221795p1@MYH3
4.98e-34FFCP PHASE1:Hg19::chr17:10560619..10560631,-#_6e8dba20ec332b7fb427468feb221795p1@MYH3
2.61e-33FFCP PHASE1:Hg19::chr9:16871214..16871260,-#_14c61c8bc356cc6396603833be5733eep11@BNC2
2.61e-33FFCP PHASE2:Hg19::chr9:16871214..16871260,-#_14c61c8bc356cc6396603833be5733eep11@BNC2
1.21e-32FFCP PHASE1:Hg19::chr17:65040678..65040733,+#_7ddb3feecdfd04938f19ba89f6e2c767p1@CACNG1
1.21e-32FFCP PHASE2:Hg19::chr17:65040678..65040733,+#_7ddb3feecdfd04938f19ba89f6e2c767p1@CACNG1
1.66e-32FFCP PHASE1:Hg19::chr11:47470682..47470693,-#_2d297363b6c93f422ccc24cf6dfa00b8p1@RAPSN
1.66e-32FFCP PHASE2:Hg19::chr11:47470682..47470693,-#_2d297363b6c93f422ccc24cf6dfa00b8p1@RAPSN
2.7e-32FFCP PHASE2:Hg19::chr2:233390904..233390920,+#_6db89f5e5fa81562469a085f1386d84cp2@CHRND
2.7e-32FFCP PHASE1:Hg19::chr2:233390904..233390920,+#_6db89f5e5fa81562469a085f1386d84cp2@CHRND
2.66e-30FFCP PHASE1:Hg19::chr1:205210718..205210738,+#_e2f38a3b34c39fd67861e8c48c2ed180p@chr1:205210718..205210738, +
2.66e-30FFCP PHASE2:Hg19::chr1:205210718..205210738,+#_e2f38a3b34c39fd67861e8c48c2ed180p@chr1:205210718..205210738, +
3.09e-30FFCP PHASE1:Hg19::chr11:44884533..44884555,+#_6415f62d2c940a301dceb00cd4fef881p@chr11:44884533..44884555, +
3.09e-30FFCP PHASE2:Hg19::chr11:44884533..44884555,+#_6415f62d2c940a301dceb00cd4fef881p@chr11:44884533..44884555, +
3.09e-30FFCP PHASE1:Hg19::chr8:144799392..144799409,+#_6415f62d2c940a301dceb00cd4fef881p@chr8:144799392..144799409, +
3.09e-30FFCP PHASE2:Hg19::chr8:144799392..144799409,+#_6415f62d2c940a301dceb00cd4fef881p@chr8:144799392..144799409, +
3.59e-30FFCP PHASE1:Hg19::chr1:33338030..33338037,-#_187ebb976ab2f2f962656d48f8e9385cp9@FNDC5
3.59e-30FFCP PHASE2:Hg19::chr1:33338030..33338037,-#_187ebb976ab2f2f962656d48f8e9385cp9@FNDC5
1.15e-29FFCP PHASE1:Hg19::chr2:189387474..189387512,+#_46031c4726a33e2d413d2a57911162c7p11@GULP1
1.15e-29FFCP PHASE2:Hg19::chr2:189387474..189387512,+#_46031c4726a33e2d413d2a57911162c7p11@GULP1
1.62e-29FFCP PHASE2:Hg19::chr2:175629150..175629163,-#_ecaebb14d43df4022f8e2baac7438380p2@CHRNA1
1.62e-29FFCP PHASE1:Hg19::chr2:175629150..175629163,-#_ecaebb14d43df4022f8e2baac7438380p2@CHRNA1

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