CL:0000214: Difference between revisions
From FANTOM5_SSTAR
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|id=CL:0000214
|name=synovial cell
|namespace=cell
|def="A meso-epithelial cell that lies between the cartilaginous fibers in the synovial membrane of a joint and pro...") |
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|xref=BTO:0003652;;FMA:66786 | |xref=BTO:0003652;;FMA:66786 | ||
|is_a=CL:0000153;;CL:0000213;;CL:0002078 | |is_a=CL:0000153;;CL:0000213;;CL:0002078 | ||
|synonym=" | |synonym="hyaluronic acid secreting cell" EXACT [];;"synoviocyte" EXACT [] | ||
|comment= | |comment= | ||
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|located_in= | |located_in= | ||
|part_of=UBERON:0002018 | |part_of=UBERON:0002018 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |||
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Revision as of 17:36, 15 June 2012
| Name: | synovial cell | |
|---|---|---|
| Namespace: | cell | |
| Definition: | "A meso-epithelial cell that lies between the cartilaginous fibers in the synovial membrane of a joint and produces hyaluronic acid." [GOC:tfm, ISBN:0721662544, PMID:17942474] | |
| Xrefs: |
| |
| Synonyms: |
"hyaluronic acid secreting cell" EXACT [] "synoviocyte" EXACT [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000153(GAG secreting cell),CL:0000213(lining cell),CL:0002078(meso-epithelial cell) |
|---|---|
| develops_from: | CL:0000134(mesenchymal cell) |
| part_of: | UBERON:0002018(synovial membrane of synovial joint) |
Children
| is a: | FF:10441-106E9 (synovial sarcoma cell line:HS-SY-II) |
|---|---|
| derives from: | FF:0000187 (human synovial cell sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10441-106E9 (synovial sarcoma cell line:HS-SY-II)
- 11291-117A4 (Synoviocyte, donor1)
- 11368-117I9 (Synoviocyte, donor2)
- 11440-118H9 (Synoviocyte, donor3)
Mouse (Mus musculus)
- 10441-106E9 (synovial sarcoma cell line:HS-SY-II)
- 11291-117A4 (Synoviocyte, donor1)
- 11368-117I9 (Synoviocyte, donor2)
- 11440-118H9 (Synoviocyte, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000214 (synovial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
