CL:0000451: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{CL
|id=CL:0000451
|name=dendritic cell
|namespace=cell
|def="A cell of hematopoietic origin, typically resident in particular tissues, specialized in the uptake, process...") |
No edit summary |
||
Line 2: | Line 2: | ||
|id=CL:0000451 | |id=CL:0000451 | ||
|name=dendritic cell | |name=dendritic cell | ||
|namespace= | |namespace=efo | ||
|def="A cell of hematopoietic origin, typically resident in particular tissues, specialized in the uptake, processing, and transport of antigens to lymph nodes for the purpose of stimulating an immune response via T cell activation. These cells are lineage negative (CD3-negative, CD19-negative, CD34-negative, and CD56-negative)." [GOC:add, ISBN:0781735149] | |def="A cell of hematopoietic origin, typically resident in particular tissues, specialized in the uptake, processing, and transport of antigens to lymph nodes for the purpose of stimulating an immune response via T cell activation. These cells are lineage negative (CD3-negative, CD19-negative, CD34-negative, and CD56-negative)." [GOC:add, ISBN:0781735149] | ||
|xref=BTO:0002042;;FMA:83036 | |xref=BTO:0002042;;FMA:83036 | ||
Line 20: | Line 20: | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.obo.owl | |||
|is_obsolete= | |||
|preceded_by= | |||
}} | }} |
Revision as of 17:37, 15 June 2012
Name: | dendritic cell | |
---|---|---|
Namespace: | efo | |
Definition: | "A cell of hematopoietic origin, typically resident in particular tissues, specialized in the uptake, processing, and transport of antigens to lymph nodes for the purpose of stimulating an immune response via T cell activation. These cells are lineage negative (CD3-negative, CD19-negative, CD34-negative, and CD56-negative)." [GOC:add, ISBN:0781735149] | |
Xrefs: |
| |
Synonyms: |
"interdigitating cell" RELATED [] "veiled cell" RELATED [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | CL:0000738(leukocyte) |
---|---|
disjoint_from: | CL:0000542(lymphocyte) |
Children
is a: | CL:0000784 (plasmacytoid dendritic cell),CL:0000990 (conventional dendritic cell) |
---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10457-106G7 (squamous cell lung carcinoma cell line:LC-1F)
- 10501-107C6 (squamous cell lung carcinoma cell line:RERF-LC-AI)
- 11227-116C3 (Dendritic Cells - monocyte immature derived, donor1)
- 11228-116C4 (Dendritic Cells - plasmacytoid, donor1)
- 11308-117C3 (Dendritic Cells - monocyte immature derived, donor2)
- 11309-117C4 (Dendritic Cells - plasmacytoid, donor2)
- 11384-118B7 (Dendritic Cells - monocyte immature derived, donor3)
- 11385-118B8 (Dendritic Cells - plasmacytoid, donor3)
- 11901-125F2 (migratory langerhans cells, donor1)
- 11902-125F3 (migratory langerhans cells, donor2)
... further results Mouse (Mus musculus)
- 10457-106G7 (squamous cell lung carcinoma cell line:LC-1F)
- 10501-107C6 (squamous cell lung carcinoma cell line:RERF-LC-AI)
- 11227-116C3 (Dendritic Cells - monocyte immature derived, donor1)
- 11228-116C4 (Dendritic Cells - plasmacytoid, donor1)
- 11308-117C3 (Dendritic Cells - monocyte immature derived, donor2)
- 11309-117C4 (Dendritic Cells - plasmacytoid, donor2)
- 11384-118B7 (Dendritic Cells - monocyte immature derived, donor3)
- 11385-118B8 (Dendritic Cells - plasmacytoid, donor3)
- 11901-125F2 (migratory langerhans cells, donor1)
- 11902-125F3 (migratory langerhans cells, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000451 (dendritic cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data