Personal tools

CL:0000542: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{CL |id=CL:0000542 |name=lymphocyte |namespace=cell |def="A lymphocyte is a leukocyte commonly found in the blood and lymph that has the characteristics of a large nucleu...")
 
No edit summary
Line 2: Line 2:
|id=CL:0000542
|id=CL:0000542
|name=lymphocyte
|name=lymphocyte
|namespace=cell
|namespace=efo
|def="A lymphocyte is a leukocyte commonly found in the blood and lymph that has the characteristics of a large nucleus, a neutral staining cytoplasm, and prominent heterochromatin." [GOC:add, ISBN:0683073696, ISBN:0781735149]
|def="A lymphocyte is a leukocyte commonly found in the blood and lymph that has the characteristics of a large nucleus, a neutral staining cytoplasm, and prominent heterochromatin." [GOC:add, ISBN:0683073696, ISBN:0781735149]
|xref=BTO:0000775;;FMA:62863
|xref=BTO:0000775;;FMA:62863
|is_a=CL:0002087
|is_a=CL:0000738;;CL:0002087
|synonym=
|synonym=
|comment=
|comment=
Line 20: Line 20:
|located_in=
|located_in=
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.obo.owl
|is_obsolete=
|preceded_by=
}}
}}

Revision as of 17:38, 15 June 2012

Name:lymphocyte
Namespace:efo
Definition:"A lymphocyte is a leukocyte commonly found in the blood and lymph that has the characteristics of a large nucleus, a neutral staining cytoplasm, and prominent heterochromatin." [GOC:add, ISBN:0683073696, ISBN:0781735149]
Xrefs:
links:

BTO:0000775

FMA:62863


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0000738(leukocyte),CL:0002087(nongranular leukocyte)
disjoint_from:CL:0000766(myeloid leukocyte)
develops_from:CL:0000051(common lymphoid progenitor)



Children


is a:CL:0000084 (T cell),CL:0000623 (natural killer cell),CL:0000945 (lymphocyte of B lineage),CL:0002679 (natural helper lymphocyte)
disjoint from:CL:0000451 (dendritic cell)
derives from:FF:0100773 (lymphoblastoid cell line sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000542 (lymphocyte), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data