CL:0002222: Difference between revisions
From FANTOM5_SSTAR
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|name=vertebrate lens cell
|namespace=cell
|def="A cell comprising the transparent, biconvex body separating the posterior chamber and vitreous body, a...") |
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Revision as of 17:40, 15 June 2012
Name: | vertebrate lens cell | |
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Namespace: | cell | |
Definition: | "A cell comprising the transparent, biconvex body separating the posterior chamber and vitreous body, and constituting part of the refracting mechanism of the mammalian eye." [GOC:tfm, ISBN:0721662544] | |
Xrefs: |
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Created by: | tmeehan | |
Creation date: | 2010-09-07T10:38:03Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | CL:0000066(epithelial cell),CL:0000306(crystallin accumulating cell),CL:0002371(somatic cell) |
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part_of: | UBERON:0000965(lens of camera-type eye) |
Children
is a: | CL:0002224 (lens epithelial cell) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10647-109A8 (lens epithelial cell line:SRA 01/04)
- 11529-119I8 (Lens Epithelial Cells, donor1)
- 11609-120I7 (Lens Epithelial Cells, donor2)
- 11690-122I7 (Lens Epithelial Cells, donor3)
Mouse (Mus musculus)
- 10647-109A8 (lens epithelial cell line:SRA 01/04)
- 11529-119I8 (Lens Epithelial Cells, donor1)
- 11609-120I7 (Lens Epithelial Cells, donor2)
- 11690-122I7 (Lens Epithelial Cells, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002222 (vertebrate lens cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data