CL:0002253: Difference between revisions

Revision as of 17:40, 15 June 2012

Name:

epithelial cell of large intestine

Namespace:

cell

Definition:

"An epithelial cell of the large intestine." [GOC:tfm]

Xrefs:

Expandlinks:

Synonyms:

"epithelial cell of colon" RELATED []

Alt_id:

CL:1000292

Created by:

tmeehan

Creation date:

2010-09-08T09:28:22Z

Ontology association Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies. link to ontology dataset data

Parents

is_a:	CL:0002563(intestinal epithelial cell)
part_of:	UBERON:0000059(large intestine)

Children

is a:	FF:0100797 (colonic cancer cell line)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

10420-106C6 (colon carcinoma cell line:COLO-320)
10511-107D7
10513-107D9 (colon carcinoma cell line:CACO-2)
10523-107F1
10557-107I8
10635-108I5
10653-109B5

Mouse (Mus musculus)

10420-106C6 (colon carcinoma cell line:COLO-320)
10511-107D7
10513-107D9 (colon carcinoma cell line:CACO-2)
10523-107F1
10557-107I8
10635-108I5
10653-109B5

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002253 (epithelial cell of large intestine), sorted by p-values Analyst: Hideya Kawaji link to source dataset human : data mouse : data

Search:

P-value	FFCP	Short description
1.55e-98	FFCP PHASE1:Hg19::chr8:128419359..128419367,-	p@chr8:128419359..128419367, -
1.55e-98	FFCP PHASE2:Hg19::chr1:93128346..93128356,-	p@chr1:93128346..93128356, -
1.55e-98	FFCP PHASE1:Hg19::chr7:141499716..141499722,+	p@chr7:141499716..141499722, +
1.55e-98	FFCP PHASE1:Hg19::chr6:104674708..104674749,-	p@chr6:104674708..104674749, -
1.55e-98	FFCP PHASE2:Hg19::chr8:127817393..127817400,+	p@chr8:127817393..127817400, +
1.55e-98	FFCP PHASE2:Hg19::chr5:57619538..57619575,-	p@chr5:57619538..57619575, -
1.55e-98	FFCP PHASE1:Hg19::chr8:107667666..107667673,+	p@chr8:107667666..107667673, +
1.55e-98	FFCP PHASE1:Hg19::chr13:54830821..54830841,+	p@chr13:54830821..54830841, +
1.55e-98	FFCP PHASE1:Hg19::chr8:128259602..128259609,-	p@chr8:128259602..128259609, -
1.55e-98	FFCP PHASE1:Hg19::chr2:205036975..205037009,-	p@chr2:205036975..205037009, -
1.55e-98	FFCP PHASE1:Hg19::chr5:71987749..71987774,-	p@chr5:71987749..71987774, -
1.55e-98	FFCP PHASE1:Hg19::chr10:2328652..2328660,+	p@chr10:2328652..2328660, +
1.55e-98	FFCP PHASE1:Hg19::chr4:157174023..157174034,+	p@chr4:157174023..157174034, +
1.55e-98	FFCP PHASE2:Hg19::chr21:37143915..37143924,-	p@chr21:37143915..37143924, -
1.55e-98	FFCP PHASE1:Hg19::chr7:87232406..87232409,-	p@chr7:87232406..87232409, -
1.55e-98	FFCP PHASE2:Hg19::chr14:76289395..76289406,+	p@chr14:76289395..76289406, +
1.55e-98	FFCP PHASE2:Hg19::chr1:198324742..198324745,+	p@chr1:198324742..198324745, +
1.55e-98	FFCP PHASE2:Hg19::chr13:46093198..46093203,+	p@chr13:46093198..46093203, +
1.55e-98	FFCP PHASE1:Hg19::chr8:39792182..39792188,+	p14@IDO2
1.55e-98	FFCP PHASE1:Hg19::chr8:127681013..127681042,-	p@chr8:127681013..127681042, -
1.55e-98	FFCP PHASE1:Hg19::chr6:5491056..5491061,+	p@chr6:5491056..5491061, +
1.55e-98	FFCP PHASE1:Hg19::chr13:99661014..99661016,-	p@chr13:99661014..99661016, -
1.55e-98	FFCP PHASE1:Hg19::chr2:127711472..127711475,+	p@chr2:127711472..127711475, +
1.55e-98	FFCP PHASE1:Hg19::chr18:28720966..28720970,+	p@chr18:28720966..28720970, +
1.55e-98	FFCP PHASE1:Hg19::chr8:127445866..127445873,+	p@chr8:127445866..127445873, +
1.55e-98	FFCP PHASE2:Hg19::chr7:30499737..30499761,+	p@chr7:30499737..30499761, +
1.55e-98	FFCP PHASE1:Hg19::chr6:91774965..91774974,+	p@chr6:91774965..91774974, +
1.55e-98	FFCP PHASE2:Hg19::chr1:78621016..78621042,+	p@chr1:78621016..78621042, +
1.55e-98	FFCP PHASE2:Hg19::chr8:99425711..99425716,-	p1@ENST00000518956
1.55e-98	FFCP PHASE2:Hg19::chr8:127568784..127568794,+	p6@ENST00000524320
1.55e-98	FFCP PHASE1:Hg19::chr2:163302780..163302789,-	p@chr2:163302780..163302789, -
1.55e-98	FFCP PHASE1:Hg19::chr1:93128331..93128338,-	p@chr1:93128331..93128338, -
1.55e-98	FFCP PHASE2:Hg19::chr8:127438794..127438800,+	p@chr8:127438794..127438800, +
1.55e-98	FFCP PHASE2:Hg19::chr16:55344418..55344442,+	p@chr16:55344418..55344442, +
1.55e-98	FFCP PHASE1:Hg19::chr13:32790683..32790693,+	p@chr13:32790683..32790693, +
1.55e-98	FFCP PHASE2:Hg19::chr8:128691603..128691614,-	p@chr8:128691603..128691614, -
1.55e-98	FFCP PHASE1:Hg19::chrX:42162203..42162241,+	p@chrX:42162203..42162241, +
1.55e-98	FFCP PHASE1:Hg19::chr3:171088092..171088113,-	p@chr3:171088092..171088113, -
1.55e-98	FFCP PHASE2:Hg19::chr4:157174108..157174136,+	p@chr4:157174108..157174136, +
1.55e-98	FFCP PHASE2:Hg19::chr7:89797154..89797172,+	p9@STEAP2
1.55e-98	FFCP PHASE2:Hg19::chr3:140054724..140054735,-	p@chr3:140054724..140054735, -
1.55e-98	FFCP PHASE1:Hg19::chr8:128807259..128807281,+	p@chr8:128807259..128807281, +
1.55e-98	FFCP PHASE1:Hg19::chr1:219739282..219739288,-	p@chr1:219739282..219739288, -
1.55e-98	FFCP PHASE2:Hg19::chr8:128415915..128415922,+	p@chr8:128415915..128415922, +
1.55e-98	FFCP PHASE2:Hg19::chr3:24797832..24797838,-	p@chr3:24797832..24797838, -
1.55e-98	FFCP PHASE1:Hg19::chr3:148165064..148165071,-	p@chr3:148165064..148165071, -
1.55e-98	FFCP PHASE1:Hg19::chr18:39550015..39550034,+	p@chr18:39550015..39550034, +
1.55e-98	FFCP PHASE1:Hg19::chr12:65466889..65466894,-	p@chr12:65466889..65466894, -
1.55e-98	FFCP PHASE1:Hg19::chr13:110258158..110258170,-	p@chr13:110258158..110258170, -
1.55e-98	FFCP PHASE2:Hg19::chr2:19707156..19707203,+	p@chr2:19707156..19707203, +
1.55e-98	FFCP PHASE2:Hg19::chr9:98505341..98505348,+	p@chr9:98505341..98505348, +
1.55e-98	FFCP PHASE2:Hg19::chr15:60749901..60749904,-	p@chr15:60749901..60749904, -
1.55e-98	FFCP PHASE2:Hg19::chr13:28541425..28541439,-	p@chr13:28541425..28541439, -
1.55e-98	FFCP PHASE1:Hg19::chr8:128260156..128260173,+	p@chr8:128260156..128260173, +
1.55e-98	FFCP PHASE2:Hg19::chr10:24726466..24726472,+	p@chr10:24726466..24726472, +
1.55e-98	FFCP PHASE1:Hg19::chr4:157174062..157174071,+	p@chr4:157174062..157174071, +
1.55e-98	FFCP PHASE1:Hg19::chr2:66794389..66794398,+	p@chr2:66794389..66794398, +
1.55e-98	FFCP PHASE2:Hg19::chr6:8389087..8389116,-	p@chr6:8389087..8389116, -
1.55e-98	FFCP PHASE2:Hg19::chr1:118658073..118658082,-	p@chr1:118658073..118658082, -
1.55e-98	FFCP PHASE2:Hg19::chr12:65277574..65277589,+	p2@FLJ41278
1.55e-98	FFCP PHASE1:Hg19::chr7:87232419..87232430,-	p@chr7:87232419..87232430, -
1.55e-98	FFCP PHASE2:Hg19::chr3:156822661..156822696,-	p@chr3:156822661..156822696, -
1.55e-98	FFCP PHASE2:Hg19::chr13:48703799..48703838,-	p@chr13:48703799..48703838, -
1.55e-98	FFCP PHASE2:Hg19::chr8:128418828..128418839,-	p@chr8:128418828..128418839, -
1.55e-98	FFCP PHASE1:Hg19::chr18:53252911..53252918,-	p106@TCF4
1.55e-98	FFCP PHASE2:Hg19::chr7:138064518..138064531,-	p@chr7:138064518..138064531, -
1.55e-98	FFCP PHASE2:Hg19::chr5:97747048..97747059,+	p@chr5:97747048..97747059, +
1.55e-98	FFCP PHASE1:Hg19::chr6:5491081..5491106,+	p@chr6:5491081..5491106, +
1.55e-98	FFCP PHASE1:Hg19::chr3:24797750..24797759,-	p@chr3:24797750..24797759, -
1.55e-98	FFCP PHASE2:Hg19::chr7:87049573..87049608,-	p@chr7:87049573..87049608, -
1.55e-98	FFCP PHASE2:Hg19::chr2:148148505..148148515,-	p@chr2:148148505..148148515, -
1.55e-98	FFCP PHASE1:Hg19::chr14:76289395..76289406,+	p@chr14:76289395..76289406, +
1.55e-98	FFCP PHASE2:Hg19::chr9:125898916..125898941,-	p14@STRBP
1.55e-98	FFCP PHASE2:Hg19::chr8:128118744..128118753,-	p@chr8:128118744..128118753, -
1.55e-98	FFCP PHASE2:Hg19::chr14:26793415..26793426,-	p@chr14:26793415..26793426, -
1.55e-98	FFCP PHASE1:Hg19::chr3:140054665..140054678,-	p@chr3:140054665..140054678, -
1.55e-98	FFCP PHASE2:Hg19::chr12:77730114..77730120,-	p@chr12:77730114..77730120, -
1.55e-98	FFCP PHASE1:Hg19::chr8:127449395..127449424,+	p@chr8:127449395..127449424, +
1.55e-98	FFCP PHASE1:Hg19::chr8:128418747..128418756,-	p@chr8:128418747..128418756, -
1.55e-98	FFCP PHASE2:Hg19::chr3:185823573..185823578,-	p26@ETV5
1.55e-98	FFCP PHASE2:Hg19::chr6:8446968..8446983,+	p@chr6:8446968..8446983, +
1.55e-98	FFCP PHASE2:Hg19::chr12:68155058..68155064,-	p@chr12:68155058..68155064, -
1.55e-98	FFCP PHASE1:Hg19::chr2:163302793..163302800,-	p@chr2:163302793..163302800, -
1.55e-98	FFCP PHASE1:Hg19::chr1:93128346..93128356,-	p@chr1:93128346..93128356, -
1.55e-98	FFCP PHASE1:Hg19::chr13:46093198..46093203,+	p@chr13:46093198..46093203, +
1.55e-98	FFCP PHASE1:Hg19::chr21:37143915..37143924,-	p@chr21:37143915..37143924, -
1.55e-98	FFCP PHASE2:Hg19::chrX:138909080..138909093,-	p@chrX:138909080..138909093, -
1.55e-98	FFCP PHASE2:Hg19::chr8:55331615..55331618,+	p@chr8:55331615..55331618, +
1.55e-98	FFCP PHASE2:Hg19::chr8:127440115..127440120,+	p@chr8:127440115..127440120, +
1.55e-98	FFCP PHASE1:Hg19::chr4:71222797..71222807,+	p@chr4:71222797..71222807, +
1.55e-98	FFCP PHASE2:Hg19::chr2:127711416..127711419,+	p@chr2:127711416..127711419, +
1.55e-98	FFCP PHASE2:Hg19::chr1:19522690..19522704,-	p@chr1:19522690..19522704, -
1.55e-98	FFCP PHASE2:Hg19::chr4:157174324..157174332,+	p@chr4:157174324..157174332, +
1.55e-98	FFCP PHASE2:Hg19::chr7:97958802..97958804,-	p@chr7:97958802..97958804, -
1.55e-98	FFCP PHASE2:Hg19::chr3:148164659..148164667,-	p@chr3:148164659..148164667, -
1.55e-98	FFCP PHASE2:Hg19::chr8:128415944..128415958,+	p@chr8:128415944..128415958, +
1.55e-98	FFCP PHASE2:Hg19::chr1:163338283..163338286,+	p@chr1:163338283..163338286, +
1.55e-98	FFCP PHASE2:Hg19::chr16:19661585..19661596,+	p@chr16:19661585..19661596, +
1.55e-98	FFCP PHASE2:Hg19::chr14:22850283..22850310,-	p@chr14:22850283..22850310, -
1.55e-98	FFCP PHASE1:Hg19::chr4:169559850..169559856,-	p@chr4:169559850..169559856, -

Showing 1 to 100 of 100 entries

@@ Line 20: / Line 20: @@
 |located_in=
 |part_of=UBERON:0000059
+|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
+|is_obsolete=
+|preceded_by=
 }}

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Revision as of 17:40, 15 June 2012

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