CL:0002586: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{CL
|id=CL:0002586
|name=retinal pigment epithelial cell
|namespace=cell
|def="An epithelial cell of the retinal pigmented epithelium." [GOC:tfm]
|xref=BTO:0004910
|is_...") |
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|def="An epithelial cell of the retinal pigmented epithelium." [GOC:tfm] | |def="An epithelial cell of the retinal pigmented epithelium." [GOC:tfm] | ||
|xref=BTO:0004910 | |xref=BTO:0004910;;FMA:75802 | ||
|is_a=CL:0000066;;CL:0000149;;CL:0002371 | |is_a=CL:0000066;;CL:0000149;;CL:0002371 | ||
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|part_of=UBERON:0001782 | |part_of=UBERON:0001782 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |||
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Revision as of 17:41, 15 June 2012
| Name: | retinal pigment epithelial cell | ||
|---|---|---|---|
| Namespace: | cell | ||
| Definition: | "An epithelial cell of the retinal pigmented epithelium." [GOC:tfm] | ||
| Xrefs: |
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| Created by: | tmeehan | ||
| Creation date: | 2011-03-06T03:37:09Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000066(epithelial cell),CL:0000149(visual pigment cell),CL:0002371(somatic cell) |
|---|---|
| part_of: | UBERON:0001782(pigmented layer of retina) |
Children
| derives from: | FF:0000158 (human retinal pigment epithelial cell sample),FF:0300100 (ARPE-19 EMT induced with TGF-beta and TNF-alpha sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11215-116A9 (Retinal Pigment Epithelial Cells, donor0)
- 11528-119I7 (Retinal Pigment Epithelial Cells, donor1)
- 11608-120I6 (Retinal Pigment Epithelial Cells, donor2)
- 11689-122I6 (Retinal Pigment Epithelial Cells, donor3)
- 13663-147C9 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
- 13664-147D1 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
- 13665-147D2 (ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep2)
- 13666-147D3 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
- 13667-147D4 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
- 13668-147D5 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
... further results Mouse (Mus musculus)
- 11215-116A9 (Retinal Pigment Epithelial Cells, donor0)
- 11528-119I7 (Retinal Pigment Epithelial Cells, donor1)
- 11608-120I6 (Retinal Pigment Epithelial Cells, donor2)
- 11689-122I6 (Retinal Pigment Epithelial Cells, donor3)
- 13663-147C9 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
- 13664-147D1 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
- 13665-147D2 (ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep2)
- 13666-147D3 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
- 13667-147D4 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
- 13668-147D5 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002586 (retinal pigment epithelial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
