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CL:0002600: Difference between revisions

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Revision as of 17:41, 15 June 2012

Name:smooth muscle cell of trachea
Namespace:cell
Definition:"A smooth muscle cell of the trachea." [GOC:tfm]
Created by:tmeehan
Creation date:2011-03-06T05:50:28Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0000192(smooth muscle cell)
part_of:UBERON:0003126(trachea)



Children


derives from:FF:0000184 (human smooth muscle cell of trachea sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002600 (smooth muscle cell of trachea), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data