DOID:201: Difference between revisions
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|name=connective tissue cancer | |name=connective tissue cancer | ||
|namespace=disease_ontology | |namespace=disease_ontology | ||
|def="A musculoskeletal system cancer that is located_in connective tissue." [url:http | |def="A musculoskeletal system cancer that is located_in connective tissue." [url:http://en.wikipedia.org/wiki/Connective_tissue] | ||
|xref=MSH:D009372;;SNOMEDCT_2010_1_31:126598008;;SNOMEDCT_2010_1_31:254821003;;UMLS_CUI:C0027656 | |xref=MSH:D009372;;SNOMEDCT_2010_1_31:126598008;;SNOMEDCT_2010_1_31:254821003;;UMLS_CUI:C0027656 | ||
|is_a=DOID:0060100 | |is_a=DOID:0060100 | ||
| Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
Revision as of 16:32, 26 June 2012
| Name: | connective tissue cancer | ||
|---|---|---|---|
| Namespace: | disease_ontology | ||
| Definition: | "A musculoskeletal system cancer that is located_in connective tissue." [url:http://en.wikipedia.org/wiki/Connective_tissue] | ||
| Xrefs: |
| ||
| Synonyms: |
"connective tissue neoplasm" EXACT [CSP2005:2008-3809] "neoplasm of connective tissues (disorder)" EXACT [SNOMEDCT_2005_07_31:126598008] "Tumour of connective tissue" EXACT [SNOMEDCT_2005_07_31:254821003] |
Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | DOID:0060100(musculoskeletal system cancer) |
|---|
Children
| is a: | DOID:200 (giant cell tumor),DOID:3347 (osteosarcoma),DOID:3355 (fibrosarcoma),DOID:3371 (chondrosarcoma),DOID:3939 (lipomatous cancer),DOID:4231 (histiocytoma) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
Human (Homo sapiens)
- 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)
- 10510-107D6 (osteosarcoma cell line:143B/TK^(-)neo^(R))
- 10600-108E6 (myxofibrosarcoma cell line:MFH-ino)
- 10684-109E9 (myxofibrosarcoma cell line:NMFH-1)
- 10704-109H2 (osteoclastoma cell line:Hs 706.T)
- 10711-109H9 (fibrous histiocytoma cell line:GCT TIB-223)
- 10720-109I9
- 10731-110B2
Mouse (Mus musculus)
- 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)
- 10510-107D6 (osteosarcoma cell line:143B/TK^(-)neo^(R))
- 10600-108E6 (myxofibrosarcoma cell line:MFH-ino)
- 10684-109E9 (myxofibrosarcoma cell line:NMFH-1)
- 10704-109H2 (osteoclastoma cell line:Hs 706.T)
- 10711-109H9 (fibrous histiocytoma cell line:GCT TIB-223)
- 10720-109I9
- 10731-110B2
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:201 (connective tissue cancer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 4.27e-34 | FFCP PHASE1:Hg19::chr3:1577628..1577634,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:1577628..1577634, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr17:46178195..46178202,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p12@CBX1 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr1:192407901..192407907,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr1:192407901..192407907, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr3:157230582..157230593,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:157230582..157230593, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr6:152592460..152592465,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr6:152592460..152592465, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr6:152589345..152589353,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p63@SYNE1 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr3:157221979..157222025,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:157221979..157222025, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr16:52581957..52581960,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p8@TOX3 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr13:23733790..23733815,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr13:23733790..23733815, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr3:2141949..2141956,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p21@CNTN4 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr7:18439523..18439524,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr7:18439523..18439524, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr3:2141982..2141990,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p16@CNTN4 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr15:96181433..96181441,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr15:96181433..96181441, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr13:109644091..109644095,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr13:109644091..109644095, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr6:152589315..152589320,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p72@SYNE1 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr1:154942376..154942386,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr1:154942376..154942386, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr1:197886803..197886812,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p7@LHX9 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr1:154942206..154942211,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr1:154942206..154942211, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr1:228806586..228806591,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr1:228806586..228806591, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr3:2141759..2141771,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:2141759..2141771, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr3:2140207..2140208,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p34@CNTN4 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr3:99508248..99508255,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:99508248..99508255, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr6:150735014..150735021,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr6:150735014..150735021, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr1:145473286..145473295,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p5@AB464458 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr1:43637641..43637648,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p16@EBNA1BP2 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr18:74535969..74535980,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr18:74535969..74535980, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr6:150735319..150735330,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr6:150735319..150735330, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr3:127441501..127441504,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p59@MGLL |
| 4.27e-34 | FFCP PHASE1:Hg19::chr15:96181408..96181419,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr15:96181408..96181419, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr13:23169005..23169009,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr13:23169005..23169009, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr4:169935485..169935488,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr4:169935485..169935488, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr1:145471703..145471706,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr1:145471703..145471706, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr5:128083909..128083918,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr5:128083909..128083918, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr1:197890538..197890548,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr1:197890538..197890548, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr18:26425339..26425342,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr18:26425339..26425342, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr2:53436150..53436154,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr2:53436150..53436154, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr14:88322648..88322655,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr14:88322648..88322655, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr5:128083931..128083952,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr5:128083931..128083952, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr12:70351934..70351939,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr12:70351934..70351939, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr1:228783266..228783269,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr1:228783266..228783269, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr10:63700017..63700022,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr10:63700017..63700022, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr4:169935479..169935481,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr4:169935479..169935481, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr3:1577559..1577577,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:1577559..1577577, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr7:79999046..79999051,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p41@CD36 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr6:109702786..109702795,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p21@CD164 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr15:33381479..33381503,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr15:33381479..33381503, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr3:2141759..2141771,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:2141759..2141771, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr18:22251681..22251685,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr18:22251681..22251685, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr6:152590052..152590068,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr6:152590052..152590068, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr3:157231406..157231414,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:157231406..157231414, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr16:77317713..77317723,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p1@CU687665 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr9:18993581..18993586,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr9:18993581..18993586, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr3:30442082..30442087,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:30442082..30442087, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr12:70351934..70351939,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr12:70351934..70351939, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr2:175629357..175629367,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p6@CHRNA1 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr10:33244066..33244083,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr10:33244066..33244083, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr4:145101707..145101712,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr4:145101707..145101712, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr12:80818259..80818266,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr12:80818259..80818266, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr11:30252646..30252648,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr11:30252646..30252648, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr9:13005000..13005036,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr9:13005000..13005036, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr2:206927652..206927658,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr2:206927652..206927658, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr12:46884845..46884851,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr12:46884845..46884851, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr9:13006722..13006729,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr9:13006722..13006729, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr3:2141851..2141858,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:2141851..2141858, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr6:152589245..152589256,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p53@SYNE1 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr1:192444852..192444861,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr1:192444852..192444861, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr12:46884845..46884851,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr12:46884845..46884851, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr1:198595896..198595910,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr1:198595896..198595910, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr3:196296715..196296737,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:196296715..196296737, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr6:142993137..142993142,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr6:142993137..142993142, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr1:113250450..113250457,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p18@RHOC |
| 4.27e-34 | FFCP PHASE1:Hg19::chr7:94540075..94540082,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p21@PPP1R9A |
| 4.27e-34 | FFCP PHASE1:Hg19::chr13:23027882..23027888,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr13:23027882..23027888, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr18:22253588..22253590,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr18:22253588..22253590, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr14:88220703..88220709,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr14:88220703..88220709, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr2:188420455..188420469,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr2:188420455..188420469, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr19:56047661..56047668,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p4@SBK2 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr3:157230599..157230604,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:157230599..157230604, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr13:23368370..23368374,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr13:23368370..23368374, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr2:175614951..175614956,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr2:175614951..175614956, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr21:17357327..17357329,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr21:17357327..17357329, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr3:157230506..157230511,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:157230506..157230511, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr3:2141982..2141990,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p16@CNTN4 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr4:72897846..72897853,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p7@NPFFR2 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr1:172009977..172009985,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr1:172009977..172009985, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr9:18504821..18504825,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr9:18504821..18504825, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr3:2141993..2142006,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p6@CNTN4 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr5:33361438..33361453,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr5:33361438..33361453, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr6:152589345..152589353,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p63@SYNE1 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr4:139817573..139817580,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr4:139817573..139817580, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr11:30105969..30105977,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p1@ENST00000527819 |
| 4.27e-34 | FFCP PHASE1:Hg19::chrX:591202..591211,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chrX:591202..591211, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr1:154942216..154942223,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr1:154942216..154942223, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr3:2141775..2141783,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:2141775..2141783, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr3:2140234..2140235,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p36@CNTN4 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr12:71031310..71031321,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p14@PTPRB |
| 4.27e-34 | FFCP PHASE2:Hg19::chr6:150735319..150735330,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr6:150735319..150735330, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr1:145473297..145473306,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p7@AB464458 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr18:74961699..74961708,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p5@GALR1 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr6:150735340..150735361,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr6:150735340..150735361, + |
