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UBERON:0000161: Difference between revisions

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Revision as of 16:56, 26 June 2012

Name:orifice
Definition:"Anatomical conduit that connects two adjacent body spaces, surrounded by two or more subdivisions of two or more organs. Examples: right atrioventricular orifice, orifice of artery, hilum of kidney, porta hepatis[FMA,modified]." [FMA:3724]
Xrefs:
links:

FMA:3724

SCTID:91837002
Synonyms: "anatomical orifice" EXACT [FMA:3724]
"anatomical ostium" EXACT [FMA:3724]
"hilum" NARROW []
Comments:in FMA, this is an anatomical conduit *space*, rather than anatomical conduit
Subset: upper_ontology_conflict

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0004111(anatomical conduit)



Children

is a:UBERON:0000166 (oral opening)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000161 (orifice), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data