UBERON:0000484: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 4: | Line 4: | ||
|namespace= | |namespace= | ||
|def="Unilaminar epithelium that consists of a single layer of cuboidal cells." [CARO:MAH, Wikipedia:Simple_cuboidal_epithelium] | |def="Unilaminar epithelium that consists of a single layer of cuboidal cells." [CARO:MAH, Wikipedia:Simple_cuboidal_epithelium] | ||
|xref=AAO:0010064;;AEO:0000067;;BILA:0000067;;CARO:0000067;;EHDAA2:0003067;;FMA:45566;;HAO:0000067;;http://upload.wikimedia.org/wikipedia/commons/thumb/d/d0/Gray1133.png/200px-Gray1133.png;;ncithesaurus:Simple_Cuboidal_Epithelium;;TAO:0001497;;XAO:0004009;;ZFA:0001497 | |xref=AAO:0010064;;AEO:0000067;;BILA:0000067;;CARO:0000067;;EHDAA2:0003067;;FMA:45566;;HAO:0000067;;http://upload.wikimedia.org/wikipedia/commons/d/d0/Gray1133.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/d/d0/Gray1133.png/200px-Gray1133.png;;ncithesaurus:Simple_Cuboidal_Epithelium;;TAO:0001497;;XAO:0004009;;ZFA:0001497 | ||
|is_a=UBERON:0000490;;UBERON:0010077 | |is_a=UBERON:0000490;;UBERON:0010077 | ||
|synonym="epithelium simplex cuboideum" EXACT [] | |synonym="epithelium simplex cuboideum" EXACT [] | ||
| Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset=uberon_slim;;vertebrate_core | |subset=uberon_slim;;vertebrate_core | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
Revision as of 16:57, 26 June 2012
| Name: | simple cuboidal epithelium | ||
|---|---|---|---|
| Definition: | "Unilaminar epithelium that consists of a single layer of cuboidal cells." [CARO:MAH, Wikipedia:Simple_cuboidal_epithelium] | ||
| Xrefs: |
| ||
| Synonyms: | "epithelium simplex cuboideum" EXACT [] | ||
| Alt_id: | UBERON:CARO_0000067-FMA_45566-ZFA_0001497 | ||
| Subset: |
uberon_slim vertebrate_core |
Gray1133.png]
200px-Gray1133.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000490(unilaminar epithelium),UBERON:0010077(cuboidal epithelium) |
|---|
Children
| is a: | UBERON:0001803 (epithelium of lens) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10647-109A8 (lens epithelial cell line:SRA 01/04)
- 11529-119I8 (Lens Epithelial Cells, donor1)
- 11609-120I7 (Lens Epithelial Cells, donor2)
- 11690-122I7 (Lens Epithelial Cells, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000484 (simple cuboidal epithelium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.41e-88 | FFCP PHASE2:Hg19::chr22:25595823..25595826,+#_73948038406170d338f9d550154b6088 | p1@CRYBB3 |
| 1.41e-88 | FFCP PHASE1:Hg19::chr22:25595823..25595826,+#_73948038406170d338f9d550154b6088 | p1@CRYBB3 |
| 3.32e-74 | FFCP PHASE2:Hg19::chr22:25615600..25615611,+#_4e3d2dd6a98aafdb9f38e147cb7432ca | p1@CRYBB2 |
| 3.32e-74 | FFCP PHASE1:Hg19::chr22:25615600..25615611,+#_4e3d2dd6a98aafdb9f38e147cb7432ca | p1@CRYBB2 |
| 5.48e-74 | FFCP PHASE2:Hg19::chr19:51891222..51891233,-#_c7131debea39a88fc134dd3f1f9789cd | p1@LIM2 |
| 5.48e-74 | FFCP PHASE1:Hg19::chr19:51891222..51891233,-#_c7131debea39a88fc134dd3f1f9789cd | p1@LIM2 |
| 3.8e-56 | FFCP PHASE1:Hg19::chr22:27017921..27017928,+#_317e176a3273e0af0a58f17b240821ad | p1@CRYBA4 |
| 3.8e-56 | FFCP PHASE2:Hg19::chr22:27017921..27017928,+#_317e176a3273e0af0a58f17b240821ad | p1@CRYBA4 |
| 3.1e-50 | FFCP PHASE1:Hg19::chr20:61204240..61204241,+#_422d023fe307f650d8ef4b9974a78060 | p@chr20:61204240..61204241, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr13:104778247..104778293,+#_422d023fe307f650d8ef4b9974a78060 | p@chr13:104778247..104778293, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr13:104778247..104778293,+#_422d023fe307f650d8ef4b9974a78060 | p@chr13:104778247..104778293, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr20:61204240..61204241,+#_422d023fe307f650d8ef4b9974a78060 | p@chr20:61204240..61204241, + |
| 5.14e-50 | FFCP PHASE2:Hg19::chr14:37642016..37642022,-#_1f98d81efe5d9368554171a1c87c961f | p7@SLC25A21 |
| 5.14e-50 | FFCP PHASE2:Hg19::chr21:44592820..44592840,-#_1f98d81efe5d9368554171a1c87c961f | p2@CU686889 |
| 5.14e-50 | FFCP PHASE1:Hg19::chr21:44592820..44592840,-#_1f98d81efe5d9368554171a1c87c961f | p2@CU686889 |
| 5.14e-50 | FFCP PHASE1:Hg19::chr14:37642016..37642022,-#_1f98d81efe5d9368554171a1c87c961f | p7@SLC25A21 |
| 6.6e-50 | FFCP PHASE1:Hg19::chr21:44589339..44589372,-#_ec36574443a2eb16f3854dd4fba63d8c | p@chr21:44589339..44589372, - |
| 6.6e-50 | FFCP PHASE2:Hg19::chr21:44592842..44592867,-#_ec36574443a2eb16f3854dd4fba63d8c | p1@CU686889 |
| 6.6e-50 | FFCP PHASE1:Hg19::chr12:132475501..132475504,+#_ec36574443a2eb16f3854dd4fba63d8c | p@chr12:132475501..132475504, + |
| 6.6e-50 | FFCP PHASE2:Hg19::chr12:132475501..132475504,+#_ec36574443a2eb16f3854dd4fba63d8c | p@chr12:132475501..132475504, + |
| 6.6e-50 | FFCP PHASE2:Hg19::chr21:44589339..44589372,-#_ec36574443a2eb16f3854dd4fba63d8c | p@chr21:44589339..44589372, - |
| 6.6e-50 | FFCP PHASE1:Hg19::chr21:44592842..44592867,-#_ec36574443a2eb16f3854dd4fba63d8c | p1@CU686889 |
| 6.27e-44 | FFCP PHASE2:Hg19::chr11:31827535..31827565,-#_6c7900ddaed7b36e17e5e6d194e4d566 | p11@PAX6 |
| 6.27e-44 | FFCP PHASE1:Hg19::chr11:31827535..31827565,-#_6c7900ddaed7b36e17e5e6d194e4d566 | p11@PAX6 |
| 1.92e-41 | FFCP PHASE2:Hg19::chr3:186262166..186262170,-#_4bbaa45e518f01c1d1584e2132665abe | p1@CRYGS |
| 1.92e-41 | FFCP PHASE1:Hg19::chr3:186262166..186262170,-#_4bbaa45e518f01c1d1584e2132665abe | p1@CRYGS |
| 4.94e-40 | FFCP PHASE2:Hg19::chr5:112173525..112173532,+#_a8fe757bec502ae9c91d176066092f45 | p@chr5:112173525..112173532, + |
| 4.94e-40 | FFCP PHASE1:Hg19::chr5:112173525..112173532,+#_a8fe757bec502ae9c91d176066092f45 | p@chr5:112173525..112173532, + |
| 1.62e-37 | FFCP PHASE2:Hg19::chr1:29586692..29586705,+#_30791a4d6deaed376963613cc279ef36 | p7@PTPRU |
| 1.62e-37 | FFCP PHASE1:Hg19::chr1:29586692..29586705,+#_30791a4d6deaed376963613cc279ef36 | p7@PTPRU |
| 2.1e-35 | FFCP PHASE2:Hg19::chr14:60975644..60975673,+#_c69e038bc512da47ebf6f424c0b4636f | p3@SIX6 |
| 2.1e-35 | FFCP PHASE1:Hg19::chr14:60975644..60975673,+#_c69e038bc512da47ebf6f424c0b4636f | p3@SIX6 |
| 6.73e-35 | FFCP PHASE1:Hg19::chr14:60975871..60975880,+#_757d49b0f91aaac9a10ed8e68f8f95b4 | p4@SIX6 |
| 6.73e-35 | FFCP PHASE2:Hg19::chr14:60975871..60975880,+#_757d49b0f91aaac9a10ed8e68f8f95b4 | p4@SIX6 |
| 5.06e-34 | FFCP PHASE2:Hg19::chr11:31667372..31667383,-#_4d8302b646609217fcf300d5a9353ccf | p@chr11:31667372..31667383, - |
| 5.06e-34 | FFCP PHASE1:Hg19::chr11:31667372..31667383,-#_4d8302b646609217fcf300d5a9353ccf | p@chr11:31667372..31667383, - |
| 8.36e-34 | FFCP PHASE2:Hg19::chr19:1470631..1470648,-#_8e32db0ae9d6c88da012ba09007c26bb | p@chr19:1470631..1470648, - |
| 8.36e-34 | FFCP PHASE1:Hg19::chr19:1470631..1470648,-#_8e32db0ae9d6c88da012ba09007c26bb | p@chr19:1470631..1470648, - |
| 5.55e-33 | FFCP PHASE2:Hg19::chr21:44589135..44589151,+#_d580910e00cc6950e06f2b35aac3089a | p1@CRYAA |
| 5.55e-33 | FFCP PHASE1:Hg19::chr21:44589135..44589151,+#_d580910e00cc6950e06f2b35aac3089a | p1@CRYAA |
| 9.55e-33 | FFCP PHASE2:Hg19::chr17:27573875..27573878,+#_1e7ecd9f20ac83fa4aca14042ed51f50 | p1@CRYBA1 |
| 9.55e-33 | FFCP PHASE1:Hg19::chr17:27573875..27573878,+#_1e7ecd9f20ac83fa4aca14042ed51f50 | p1@CRYBA1 |
| 2.74e-29 | FFCP PHASE1:Hg19::chr2:45168589..45168601,-#_53a6d0e2e8668ccd9d72d1b3b4645a0a | p2@ENST00000456467 |
| 2.74e-29 | FFCP PHASE2:Hg19::chr2:45168589..45168601,-#_53a6d0e2e8668ccd9d72d1b3b4645a0a | p2@ENST00000456467 |
| 3.65e-29 | FFCP PHASE1:Hg19::chr7:107883678..107883689,-#_fead18df756e99a9f8dfc5c2e885ee5c | p13@NRCAM |
| 3.65e-29 | FFCP PHASE2:Hg19::chr7:107883678..107883689,-#_fead18df756e99a9f8dfc5c2e885ee5c | p13@NRCAM |
| 7.46e-29 | FFCP PHASE1:Hg19::chr13:114202163..114202178,+#_0226585e18c36ca715a1605c11d460da | p@chr13:114202163..114202178, + |
| 7.46e-29 | FFCP PHASE2:Hg19::chr13:114202163..114202178,+#_0226585e18c36ca715a1605c11d460da | p@chr13:114202163..114202178, + |
| 1.36e-28 | FFCP PHASE2:Hg19::chr3:173116225..173116242,+#_c0651deb1f7ebb6a09eb3829e797c37d | p10@NLGN1 |
| 1.36e-28 | FFCP PHASE1:Hg19::chr3:173116225..173116242,+#_c0651deb1f7ebb6a09eb3829e797c37d | p10@NLGN1 |
| 2.64e-27 | FFCP PHASE1:Hg19::chr2:45169233..45169244,+#_b6aa4ae0b26d86eec3606168ab8463d2 | p10@SIX3 |
| 2.64e-27 | FFCP PHASE2:Hg19::chr2:45169233..45169244,+#_b6aa4ae0b26d86eec3606168ab8463d2 | p10@SIX3 |
| 8.39e-27 | FFCP PHASE1:Hg19::chr14:60975858..60975869,+#_d5003a14f316533930b65d4c559b6400 | p2@SIX6 |
| 8.39e-27 | FFCP PHASE2:Hg19::chr14:60975858..60975869,+#_d5003a14f316533930b65d4c559b6400 | p2@SIX6 |
| 5.56e-26 | FFCP PHASE1:Hg19::chr1:147374915..147374932,+#_86909309e8ed58cdce3e73ea07b9a366 | p1@GJA8 |
| 5.56e-26 | FFCP PHASE2:Hg19::chr19:40920692..40920700,-#_86909309e8ed58cdce3e73ea07b9a366 | p@chr19:40920692..40920700, - |
| 5.56e-26 | FFCP PHASE1:Hg19::chr20:35861148..35861151,+#_86909309e8ed58cdce3e73ea07b9a366 | p@chr20:35861148..35861151, + |
| 5.56e-26 | FFCP PHASE2:Hg19::chr3:150690809..150690822,-#_86909309e8ed58cdce3e73ea07b9a366 | p3@CLRN1 |
| 5.56e-26 | FFCP PHASE1:Hg19::chr9:75848662..75848671,-#_86909309e8ed58cdce3e73ea07b9a366 | p@chr9:75848662..75848671, - |
| 5.56e-26 | FFCP PHASE2:Hg19::chrX:43587410..43587413,+#_86909309e8ed58cdce3e73ea07b9a366 | p@chrX:43587410..43587413, + |
| 5.56e-26 | FFCP PHASE1:Hg19::chr19:40920692..40920700,-#_86909309e8ed58cdce3e73ea07b9a366 | p@chr19:40920692..40920700, - |
| 5.56e-26 | FFCP PHASE2:Hg19::chr1:147374915..147374932,+#_86909309e8ed58cdce3e73ea07b9a366 | p1@GJA8 |
| 5.56e-26 | FFCP PHASE1:Hg19::chr3:150690809..150690822,-#_86909309e8ed58cdce3e73ea07b9a366 | p3@CLRN1 |
| 5.56e-26 | FFCP PHASE2:Hg19::chr20:35861148..35861151,+#_86909309e8ed58cdce3e73ea07b9a366 | p@chr20:35861148..35861151, + |
| 5.56e-26 | FFCP PHASE1:Hg19::chrX:43587410..43587413,+#_86909309e8ed58cdce3e73ea07b9a366 | p@chrX:43587410..43587413, + |
| 5.56e-26 | FFCP PHASE2:Hg19::chr9:75848662..75848671,-#_86909309e8ed58cdce3e73ea07b9a366 | p@chr9:75848662..75848671, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr21:44592626..44592635,-#_2cbe36fcb96f16749f04bf66d641c895 | p5@CU686889 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr21:44592788..44592807,+#_2cbe36fcb96f16749f04bf66d641c895 | p@chr21:44592788..44592807, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr19:17137781..17137792,-#_2cbe36fcb96f16749f04bf66d641c895 | p6@CPAMD8 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr9:100057272..100057276,+#_2cbe36fcb96f16749f04bf66d641c895 | p@chr9:100057272..100057276, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr7:123198284..123198329,-#_2cbe36fcb96f16749f04bf66d641c895 | p3@NDUFA5 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr1:86064794..86064797,+#_2cbe36fcb96f16749f04bf66d641c895 | p1@ENST00000426794 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr1:115873480..115873484,+#_2cbe36fcb96f16749f04bf66d641c895 | p@chr1:115873480..115873484, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr5:124468141..124468176,-#_2cbe36fcb96f16749f04bf66d641c895 | p@chr5:124468141..124468176, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr5:45038620..45038622,+#_2cbe36fcb96f16749f04bf66d641c895 | p@chr5:45038620..45038622, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr2:693025..693036,+#_2cbe36fcb96f16749f04bf66d641c895 | p@chr2:693025..693036, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr2:10538258..10538282,+#_2cbe36fcb96f16749f04bf66d641c895 | p@chr2:10538258..10538282, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr21:44592750..44592758,-#_2cbe36fcb96f16749f04bf66d641c895 | p4@CU686889 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr4:140656282..140656285,-#_2cbe36fcb96f16749f04bf66d641c895 | p@chr4:140656282..140656285, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr12:56848437..56848442,-#_2cbe36fcb96f16749f04bf66d641c895 | p1@MIP |
| 7.14e-26 | FFCP PHASE1:Hg19::chr2:45154282..45154288,-#_2cbe36fcb96f16749f04bf66d641c895 | p@chr2:45154282..45154288, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr13:44875179..44875188,-#_2cbe36fcb96f16749f04bf66d641c895 | p@chr13:44875179..44875188, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr1:45769711..45769721,-#_2cbe36fcb96f16749f04bf66d641c895 | p@chr1:45769711..45769721, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr16:85617064..85617073,-#_2cbe36fcb96f16749f04bf66d641c895 | p@chr16:85617064..85617073, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr5:464155..464205,+#_2cbe36fcb96f16749f04bf66d641c895 | p@chr5:464155..464205, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr1:115873480..115873484,+#_2cbe36fcb96f16749f04bf66d641c895 | p@chr1:115873480..115873484, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr21:44592512..44592521,+#_2cbe36fcb96f16749f04bf66d641c895 | p@chr21:44592512..44592521, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr20:33903184..33903189,-#_2cbe36fcb96f16749f04bf66d641c895 | p11@UQCC |
| 7.14e-26 | FFCP PHASE1:Hg19::chr21:44592358..44592365,+#_2cbe36fcb96f16749f04bf66d641c895 | p@chr21:44592358..44592365, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr12:56848437..56848442,-#_2cbe36fcb96f16749f04bf66d641c895 | p1@MIP |
| 7.14e-26 | FFCP PHASE2:Hg19::chr21:36253916..36253918,-#_2cbe36fcb96f16749f04bf66d641c895 | p@chr21:36253916..36253918, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr5:124468141..124468176,-#_2cbe36fcb96f16749f04bf66d641c895 | p@chr5:124468141..124468176, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr8:94870047..94870056,+#_2cbe36fcb96f16749f04bf66d641c895 | p30@PDP1 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr13:44875179..44875188,-#_2cbe36fcb96f16749f04bf66d641c895 | p@chr13:44875179..44875188, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr21:44592788..44592807,+#_2cbe36fcb96f16749f04bf66d641c895 | p@chr21:44592788..44592807, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr11:65361417..65361421,-#_2cbe36fcb96f16749f04bf66d641c895 | p2@KCNK7 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr11:65361417..65361421,-#_2cbe36fcb96f16749f04bf66d641c895 | p2@KCNK7 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr2:10538258..10538282,+#_2cbe36fcb96f16749f04bf66d641c895 | p@chr2:10538258..10538282, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr1:86064794..86064797,+#_2cbe36fcb96f16749f04bf66d641c895 | p1@ENST00000426794 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr3:156322310..156322314,-#_2cbe36fcb96f16749f04bf66d641c895 | p@chr3:156322310..156322314, - |
