Personal tools

UBERON:0001172: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 5: Line 5:
|def=
|def=
|xref=FMA:14654;;MA:0002496;;ncithesaurus:Liver_Acinus;;SCTID:272214009
|xref=FMA:14654;;MA:0002496;;ncithesaurus:Liver_Acinus;;SCTID:272214009
|is_a=UBERON:0000077;;UBERON:0009842
|is_a=UBERON:0004119;;UBERON:0009842
|synonym="liver acinus" EXACT [];;"portal acinus" EXACT []
|synonym="liver acinus" EXACT [];;"portal acinus" EXACT []
|comment=This class was created automatically from a combination of ontologies
|comment=This class was created automatically from a combination of ontologies
Line 14: Line 14:
|obo_creation_date=
|obo_creation_date=
|subset=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=UBERON:0001171;;UBERON:0004647
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 16:58, 26 June 2012

Name:hepatic acinus
Xrefs:
links:

FMA:14654
MA:0002496
ncithesaurus:Liver_Acinus

SCTID:272214009
Synonyms: "liver acinus" EXACT []
"portal acinus" EXACT []
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_14654-MA_0002496

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004119(endoderm-derived structure),UBERON:0009842(acinus)



Children

part of:UBERON:0001282 (intralobular bile duct)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001172 (hepatic acinus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr13:88008760..88008795,+#_d29232ed534d2991c8b7e899568f906fp@chr13:88008760..88008795, +
5.42e-195FFCP PHASE1:Hg19::chr2:234545407..234545408,+#_d29232ed534d2991c8b7e899568f906fp9@UGT1A10
5.42e-195FFCP PHASE2:Hg19::chr2:234545407..234545408,+#_d29232ed534d2991c8b7e899568f906fp9@UGT1A10
5.42e-195FFCP PHASE1:Hg19::chr2:234545437..234545446,+#_d29232ed534d2991c8b7e899568f906fp4@UGT1A10
5.42e-195FFCP PHASE2:Hg19::chr2:234545437..234545446,+#_d29232ed534d2991c8b7e899568f906fp4@UGT1A10
5.42e-195FFCP PHASE2:Hg19::chr21:45826350..45826387,+#_d29232ed534d2991c8b7e899568f906fp22@TRPM2
5.42e-195FFCP PHASE1:Hg19::chr21:45826350..45826387,+#_d29232ed534d2991c8b7e899568f906fp22@TRPM2
5.42e-195FFCP PHASE1:Hg19::chr11:77795673..77795689,-#_d29232ed534d2991c8b7e899568f906fp@chr11:77795673..77795689, -
5.42e-195FFCP PHASE1:Hg19::chr2:234545708..234545716,+#_d29232ed534d2991c8b7e899568f906fp5@UGT1A10
5.42e-195FFCP PHASE2:Hg19::chr2:234545708..234545716,+#_d29232ed534d2991c8b7e899568f906fp5@UGT1A10
5.42e-195FFCP PHASE1:Hg19::chr1:207059144..207059147,+#_d29232ed534d2991c8b7e899568f906fp@chr1:207059144..207059147, +
5.42e-195FFCP PHASE1:Hg19::chr18:1101041..1101044,+#_d29232ed534d2991c8b7e899568f906fp@chr18:1101041..1101044, +
5.42e-195FFCP PHASE2:Hg19::chr11:77795673..77795689,-#_d29232ed534d2991c8b7e899568f906fp@chr11:77795673..77795689, -
5.42e-195FFCP PHASE2:Hg19::chr1:207059144..207059147,+#_d29232ed534d2991c8b7e899568f906fp@chr1:207059144..207059147, +
5.42e-195FFCP PHASE1:Hg19::chr4:166513744..166513789,+#_d29232ed534d2991c8b7e899568f906fp@chr4:166513744..166513789, +
5.42e-195FFCP PHASE1:Hg19::chr13:88008760..88008795,+#_d29232ed534d2991c8b7e899568f906fp@chr13:88008760..88008795, +
5.42e-195FFCP PHASE2:Hg19::chr4:166513744..166513789,+#_d29232ed534d2991c8b7e899568f906fp@chr4:166513744..166513789, +
5.42e-195FFCP PHASE2:Hg19::chr18:1101041..1101044,+#_d29232ed534d2991c8b7e899568f906fp@chr18:1101041..1101044, +
9.37e-99FFCP PHASE2:Hg19::chr6:32522832..32522842,-#_be1e9cbba04f1dc945b8e83d388c299dp@chr6:32522832..32522842, -
9.37e-99FFCP PHASE1:Hg19::chr6:32522832..32522842,-#_be1e9cbba04f1dc945b8e83d388c299dp@chr6:32522832..32522842, -
9.37e-99FFCP PHASE2:Hg19::chr2:158155402..158155409,-#_be1e9cbba04f1dc945b8e83d388c299dp3@ENST00000410472
9.37e-99FFCP PHASE1:Hg19::chr2:158155402..158155409,-#_be1e9cbba04f1dc945b8e83d388c299dp3@ENST00000410472
9.37e-99FFCP PHASE1:Hg19::chr11:73874637..73874639,+#_be1e9cbba04f1dc945b8e83d388c299dp@chr11:73874637..73874639, +
9.37e-99FFCP PHASE2:Hg19::chr11:73874637..73874639,+#_be1e9cbba04f1dc945b8e83d388c299dp@chr11:73874637..73874639, +
9.37e-99FFCP PHASE1:Hg19::chr13:98605781..98605792,+#_be1e9cbba04f1dc945b8e83d388c299dp34@IPO5
9.37e-99FFCP PHASE2:Hg19::chr5:52786654..52786665,-#_be1e9cbba04f1dc945b8e83d388c299dp@chr5:52786654..52786665, -
9.37e-99FFCP PHASE1:Hg19::chr5:52786654..52786665,-#_be1e9cbba04f1dc945b8e83d388c299dp@chr5:52786654..52786665, -
9.37e-99FFCP PHASE2:Hg19::chr13:98605781..98605792,+#_be1e9cbba04f1dc945b8e83d388c299dp34@IPO5
2.55e-98FFCP PHASE2:Hg19::chr2:158005569..158005571,-#_a2bade7e90a20fbd5d95789e70742040p@chr2:158005569..158005571, -
2.55e-98FFCP PHASE1:Hg19::chr2:158005569..158005571,-#_a2bade7e90a20fbd5d95789e70742040p@chr2:158005569..158005571, -
2.55e-98FFCP PHASE2:Hg19::chr11:7904519..7904534,-#_a2bade7e90a20fbd5d95789e70742040p1@ENST00000529488, p1@ENST00000533634
2.55e-98FFCP PHASE1:Hg19::chr9:26936427..26936432,-#_a2bade7e90a20fbd5d95789e70742040p@chr9:26936427..26936432, -
2.55e-98FFCP PHASE2:Hg19::chr9:26936427..26936432,-#_a2bade7e90a20fbd5d95789e70742040p@chr9:26936427..26936432, -
2.55e-98FFCP PHASE2:Hg19::chrX:147062891..147062896,+#_a2bade7e90a20fbd5d95789e70742040p3@FMR1NB
2.55e-98FFCP PHASE1:Hg19::chrX:147062891..147062896,+#_a2bade7e90a20fbd5d95789e70742040p3@FMR1NB
2.55e-98FFCP PHASE1:Hg19::chr11:7904519..7904534,-#_a2bade7e90a20fbd5d95789e70742040p1@ENST00000529488, p1@ENST00000533634
1.23e-66FFCP PHASE1:Hg19::chr15:32969649..32969656,+#_50715f22936b44034cf68750984f4a89p14@SCG5
1.23e-66FFCP PHASE1:Hg19::chr4:33469231..33469240,+#_50715f22936b44034cf68750984f4a89p@chr4:33469231..33469240, +
1.23e-66FFCP PHASE2:Hg19::chr4:33469231..33469240,+#_50715f22936b44034cf68750984f4a89p@chr4:33469231..33469240, +
1.23e-66FFCP PHASE2:Hg19::chr15:32969649..32969656,+#_50715f22936b44034cf68750984f4a89p14@SCG5
1.23e-66FFCP PHASE1:Hg19::chr6:117747000..117747010,-#_50715f22936b44034cf68750984f4a89p9@ROS1
1.23e-66FFCP PHASE2:Hg19::chr6:117747000..117747010,-#_50715f22936b44034cf68750984f4a89p9@ROS1
1.23e-66FFCP PHASE1:Hg19::chr2:234545393..234545403,+#_50715f22936b44034cf68750984f4a89p3@UGT1A10
1.23e-66FFCP PHASE2:Hg19::chr2:234545393..234545403,+#_50715f22936b44034cf68750984f4a89p3@UGT1A10
2.39e-66FFCP PHASE1:Hg19::chr4:33469257..33469268,+#_397d8911600efc4dbbd775f5956ab56dp@chr4:33469257..33469268, +
2.39e-66FFCP PHASE2:Hg19::chr4:33469257..33469268,+#_397d8911600efc4dbbd775f5956ab56dp@chr4:33469257..33469268, +
4.66e-66FFCP PHASE2:Hg19::chr22:49769903..49769910,+#_7c6a7a7c140c9157c4fa2daed3334933p@chr22:49769903..49769910, +
4.66e-66FFCP PHASE1:Hg19::chr22:49769903..49769910,+#_7c6a7a7c140c9157c4fa2daed3334933p@chr22:49769903..49769910, +
1.46e-50FFCP PHASE1:Hg19::chr6:32522809..32522827,-#_2e63e1df8cb828abcae364265060cdc2p@chr6:32522809..32522827, -
1.46e-50FFCP PHASE2:Hg19::chr6:72255927..72255937,+#_2e63e1df8cb828abcae364265060cdc2p@chr6:72255927..72255937, +
1.46e-50FFCP PHASE2:Hg19::chr18:514455..514467,+#_2e63e1df8cb828abcae364265060cdc2p@chr18:514455..514467, +
1.46e-50FFCP PHASE1:Hg19::chr6:72255927..72255937,+#_2e63e1df8cb828abcae364265060cdc2p@chr6:72255927..72255937, +
1.46e-50FFCP PHASE2:Hg19::chr3:106556772..106556810,-#_2e63e1df8cb828abcae364265060cdc2p@chr3:106556772..106556810, -
1.46e-50FFCP PHASE2:Hg19::chr6:32522809..32522827,-#_2e63e1df8cb828abcae364265060cdc2p@chr6:32522809..32522827, -
1.46e-50FFCP PHASE1:Hg19::chr18:514455..514467,+#_2e63e1df8cb828abcae364265060cdc2p@chr18:514455..514467, +
1.46e-50FFCP PHASE1:Hg19::chr3:106556772..106556810,-#_2e63e1df8cb828abcae364265060cdc2p@chr3:106556772..106556810, -
2.42e-50FFCP PHASE1:Hg19::chr11:77794459..77794475,+#_c8432694ffc1d3f13014ee3d1ec730cdp@chr11:77794459..77794475, +
2.42e-50FFCP PHASE2:Hg19::chr11:77794459..77794475,+#_c8432694ffc1d3f13014ee3d1ec730cdp@chr11:77794459..77794475, +
2.42e-50FFCP PHASE1:Hg19::chr4:5526611..5526614,-#_c8432694ffc1d3f13014ee3d1ec730cdp@chr4:5526611..5526614, -
2.42e-50FFCP PHASE2:Hg19::chr4:5526611..5526614,-#_c8432694ffc1d3f13014ee3d1ec730cdp@chr4:5526611..5526614, -
2.42e-50FFCP PHASE1:Hg19::chr2:187867941..187867952,+#_c8432694ffc1d3f13014ee3d1ec730cdp1@ENST00000453517
2.42e-50FFCP PHASE2:Hg19::chr2:187867941..187867952,+#_c8432694ffc1d3f13014ee3d1ec730cdp1@ENST00000453517
3.99e-50FFCP PHASE2:Hg19::chr11:77792240..77792241,+#_dc1b27c816cb96f2b4069f9c3d62d1b9p@chr11:77792240..77792241, +
3.99e-50FFCP PHASE2:Hg19::chr20:50479417..50479427,-#_dc1b27c816cb96f2b4069f9c3d62d1b9p2@ENST00000438154
3.99e-50FFCP PHASE1:Hg19::chr20:50479417..50479427,-#_dc1b27c816cb96f2b4069f9c3d62d1b9p2@ENST00000438154
3.99e-50FFCP PHASE2:Hg19::chr21:29774431..29774441,-#_dc1b27c816cb96f2b4069f9c3d62d1b9p@chr21:29774431..29774441, -
3.99e-50FFCP PHASE1:Hg19::chr21:29774431..29774441,-#_dc1b27c816cb96f2b4069f9c3d62d1b9p@chr21:29774431..29774441, -
3.99e-50FFCP PHASE2:Hg19::chr22:49769966..49769971,+#_dc1b27c816cb96f2b4069f9c3d62d1b9p@chr22:49769966..49769971, +
3.99e-50FFCP PHASE1:Hg19::chr22:49769966..49769971,+#_dc1b27c816cb96f2b4069f9c3d62d1b9p@chr22:49769966..49769971, +
3.99e-50FFCP PHASE2:Hg19::chr21:10597500..10597509,-#_dc1b27c816cb96f2b4069f9c3d62d1b9p2@uc011abv.1
3.99e-50FFCP PHASE1:Hg19::chr21:10597500..10597509,-#_dc1b27c816cb96f2b4069f9c3d62d1b9p2@uc011abv.1
3.99e-50FFCP PHASE1:Hg19::chr11:77792240..77792241,+#_dc1b27c816cb96f2b4069f9c3d62d1b9p@chr11:77792240..77792241, +
6.58e-50FFCP PHASE2:Hg19::chr5:5146235..5146246,+#_81459d0dbe4e0aa2f052823476c90983p7@ADAMTS16
6.58e-50FFCP PHASE1:Hg19::chr5:5146235..5146246,+#_81459d0dbe4e0aa2f052823476c90983p7@ADAMTS16
6.58e-50FFCP PHASE1:Hg19::chr12:19928351..19928358,+#_81459d0dbe4e0aa2f052823476c90983p2@ENST00000535764
6.58e-50FFCP PHASE2:Hg19::chr12:19928351..19928358,+#_81459d0dbe4e0aa2f052823476c90983p2@ENST00000535764
6.58e-50FFCP PHASE2:Hg19::chr21:28899015..28899027,+#_81459d0dbe4e0aa2f052823476c90983p@chr21:28899015..28899027, +
6.58e-50FFCP PHASE1:Hg19::chr21:28899015..28899027,+#_81459d0dbe4e0aa2f052823476c90983p@chr21:28899015..28899027, +
6.58e-50FFCP PHASE2:Hg19::chrX:70798285..70798290,+#_81459d0dbe4e0aa2f052823476c90983p1@ACRC
6.58e-50FFCP PHASE1:Hg19::chrX:70798285..70798290,+#_81459d0dbe4e0aa2f052823476c90983p1@ACRC
6.62e-41FFCP PHASE1:Hg19::chr4:166513830..166513834,+#_911e6bd500f2ce48b174a728f0dc55cep@chr4:166513830..166513834, +
6.62e-41FFCP PHASE2:Hg19::chr4:166513830..166513834,+#_911e6bd500f2ce48b174a728f0dc55cep@chr4:166513830..166513834, +
6.62e-41FFCP PHASE1:Hg19::chr18:514484..514495,+#_911e6bd500f2ce48b174a728f0dc55cep@chr18:514484..514495, +
6.62e-41FFCP PHASE2:Hg19::chrX:147062877..147062885,+#_911e6bd500f2ce48b174a728f0dc55cep2@FMR1NB
6.62e-41FFCP PHASE1:Hg19::chrX:147062877..147062885,+#_911e6bd500f2ce48b174a728f0dc55cep2@FMR1NB
6.62e-41FFCP PHASE2:Hg19::chr6:75912602..75912613,-#_911e6bd500f2ce48b174a728f0dc55cep25@COL12A1
6.62e-41FFCP PHASE2:Hg19::chr3:98275000..98275016,-#_911e6bd500f2ce48b174a728f0dc55cep@chr3:98275000..98275016, -
6.62e-41FFCP PHASE1:Hg19::chr6:75912602..75912613,-#_911e6bd500f2ce48b174a728f0dc55cep25@COL12A1
6.62e-41FFCP PHASE1:Hg19::chr3:98275000..98275016,-#_911e6bd500f2ce48b174a728f0dc55cep@chr3:98275000..98275016, -
6.62e-41FFCP PHASE2:Hg19::chr18:514484..514495,+#_911e6bd500f2ce48b174a728f0dc55cep@chr18:514484..514495, +
6.62e-41FFCP PHASE1:Hg19::chr2:158155450..158155474,-#_911e6bd500f2ce48b174a728f0dc55cep1@ENST00000410472
6.62e-41FFCP PHASE2:Hg19::chr2:158155450..158155474,-#_911e6bd500f2ce48b174a728f0dc55cep1@ENST00000410472
6.62e-41FFCP PHASE1:Hg19::chr18:1099004..1099011,+#_911e6bd500f2ce48b174a728f0dc55cep@chr18:1099004..1099011, +
6.62e-41FFCP PHASE2:Hg19::chr18:1099004..1099011,+#_911e6bd500f2ce48b174a728f0dc55cep@chr18:1099004..1099011, +
6.62e-41FFCP PHASE1:Hg19::chr2:38402050..38402059,+#_911e6bd500f2ce48b174a728f0dc55cep@chr2:38402050..38402059, +
6.62e-41FFCP PHASE2:Hg19::chr2:38402050..38402059,+#_911e6bd500f2ce48b174a728f0dc55cep@chr2:38402050..38402059, +
9.91e-41FFCP PHASE1:Hg19::chr12:127737083..127737103,-#_978417a8d3f832df8541ea95023546f8p@chr12:127737083..127737103, -
9.91e-41FFCP PHASE2:Hg19::chr12:127737083..127737103,-#_978417a8d3f832df8541ea95023546f8p@chr12:127737083..127737103, -
9.91e-41FFCP PHASE2:Hg19::chr6:67772946..67772961,+#_978417a8d3f832df8541ea95023546f8p@chr6:67772946..67772961, +
9.91e-41FFCP PHASE1:Hg19::chr6:67772946..67772961,+#_978417a8d3f832df8541ea95023546f8p@chr6:67772946..67772961, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0001172&oldid=1835489"