UBERON:0001556: Difference between revisions
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|name=lower urinary tract | |name=lower urinary tract | ||
|namespace= | |namespace= | ||
|def="Subdivision of urinary system which consists of the urinary bladder and the urethra." [] | |def="Subdivision of urinary system which consists of the urinary bladder and the urethra." [FMA:45659] | ||
|xref=FMA:45659;;galen:LowerUrinaryTract;;MA:0002636;;SCTID:181420004 | |xref=FMA:45659;;galen:LowerUrinaryTract;;MA:0002636;;SCTID:181420004 | ||
|is_a=UBERON: | |is_a=UBERON:0000477;;UBERON:0006554 | ||
|synonym= | |synonym= | ||
|comment= | |comment= | ||
|alt_id=UBERON:FMA_45659-MA_0002636 | |alt_id=UBERON:FMA_45659-MA_0002636 | ||
|disjoint_from= | |disjoint_from= | ||
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|obo_creation_date= | |obo_creation_date= | ||
|subset=uberon_slim | |subset=uberon_slim | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 16:59, 26 June 2012
| Name: | lower urinary tract | |
|---|---|---|
| Definition: | "Subdivision of urinary system which consists of the urinary bladder and the urethra." [FMA:45659] | |
| Xrefs: |
| |
| Alt_id: | UBERON:FMA_45659-MA_0002636 | |
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000477(anatomical cluster),UBERON:0006554(urinary system structure) |
|---|
Children
| part of: | UBERON:0000057 (urethra),UBERON:0001255 (urinary bladder),CL:1000600 (lower urinary tract cell) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10011-101C2 (bladder, adult, pool1)
- 10291-104G3
- 10319-105A4 (Urethra, donor2)
- 10347-105D5
- 10418-106C4 (transitional-cell carcinoma cell line:5637)
- 10565-108A7
- 10587-108D2
- 10751-110D4
- 11519-119H7 (Smooth Muscle Cells - Bladder, donor1)
- 11599-120H6
... further results Mouse (Mus musculus)
- 10011-101C2 (bladder, adult, pool1)
- 10291-104G3
- 10319-105A4 (Urethra, donor2)
- 10347-105D5
- 10418-106C4 (transitional-cell carcinoma cell line:5637)
- 10565-108A7
- 10587-108D2
- 10751-110D4
- 11519-119H7 (Smooth Muscle Cells - Bladder, donor1)
- 11599-120H6
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001556 (lower urinary tract), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
