UBERON:0002680: Difference between revisions

Revision as of 17:02, 26 June 2012

regional part of metencephalon

Definition:

"A regional part of brain that is part of a metencephalon [Obol]." [OBOL:automatic]

Xrefs:

Synonyms:

"anatomical structure of brain of epencephalon-2" EXACT [OBOL:automatic]
"anatomical structure of brain of metencephalon" EXACT [OBOL:automatic]
"biological structure of brain of epencephalon-2" EXACT [OBOL:automatic]
"biological structure of brain of metencephalon" EXACT [OBOL:automatic]
"brain anatomical structure of epencephalon-2" EXACT [OBOL:automatic]
"brain anatomical structure of metencephalon" EXACT [OBOL:automatic]
"brain biological structure of epencephalon-2" EXACT [OBOL:automatic]
"brain biological structure of metencephalon" EXACT [OBOL:automatic]
"epencephalon-2 anatomical structure of brain" EXACT [OBOL:automatic]
"epencephalon-2 biological structure of brain" EXACT [OBOL:automatic]
"epencephalon-2 brain anatomical structure" EXACT [OBOL:automatic]
"epencephalon-2 brain biological structure" EXACT [OBOL:automatic]
"epencephalon-2 neuraxis segment" EXACT [OBOL:automatic]
"epencephalon-2 regional part of brain" EXACT [OBOL:automatic]
"epencephalon-2 segment of brain" EXACT [OBOL:automatic]
"metencephalon anatomical structure of brain" EXACT [OBOL:automatic]
"metencephalon biological structure of brain" EXACT [OBOL:automatic]
"metencephalon brain anatomical structure" EXACT [OBOL:automatic]
"metencephalon brain biological structure" EXACT [OBOL:automatic]
"metencephalon neuraxis segment" EXACT [OBOL:automatic]
"metencephalon regional part of brain" EXACT [OBOL:automatic]
"metencephalon segment of brain" EXACT [OBOL:automatic]
"metencephalon subdivision" EXACT [FMA:67942]
"neuraxis segment of epencephalon-2" EXACT [OBOL:automatic]
"neuraxis segment of metencephalon" EXACT [OBOL:automatic]
"regional part of brain of epencephalon-2" EXACT [OBOL:automatic]
"regional part of brain of metencephalon" EXACT [OBOL:automatic]
"segment of brain of epencephalon-2" EXACT [OBOL:automatic]
"segment of brain of metencephalon" EXACT [OBOL:automatic]
"segment of metencephalon" EXACT [NIF_GrossAnatomy:birnlex_1361]

Alt_id:

UBERON:NIF_GrossAnatomy_birnlex_1361-FMA_67942

Ontology association Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies. link to ontology dataset data

Parents

is_a:	UBERON:0000477(anatomical cluster),UBERON:0002616(regional part of brain),UBERON:0010314(structure with developmental contribution from neural crest)

Children

is a:	UBERON:0000988 (pons),UBERON:0002037 (cerebellum)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

10033-101E6 (pons, adult, pool1)
10083-102B2 (cerebellum, adult, pool1)
10114-102E6 (cerebellum)
10115-102E7 (cerebellum)
10116-102E8 (cerebellum)
10117-102E9 (cerebellum)
10118-102F1 (cerebellum)
10119-102F2 (cerebellum)
10120-102F3 (cerebellum)
10121-102F4 (cerebellum)

... further results Mouse (Mus musculus)

10033-101E6 (pons, adult, pool1)
10083-102B2 (cerebellum, adult, pool1)
10114-102E6 (cerebellum)
10115-102E7 (cerebellum)
10116-102E8 (cerebellum)
10117-102E9 (cerebellum)
10118-102F1 (cerebellum)
10119-102F2 (cerebellum)
10120-102F3 (cerebellum)
10121-102F4 (cerebellum)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002680 (regional part of metencephalon), sorted by p-values Analyst: Hideya Kawaji link to source dataset human : data mouse : data

Search:

P-value	FFCP	Short description
4.91e-91	FFCP PHASE2:Hg19::chr11:27742115..27742119,-	p17@BDNF
4.91e-91	FFCP PHASE1:Hg19::chr11:27742115..27742119,-	p17@BDNF
1.37e-87	FFCP PHASE1:Hg19::chr6:72922728..72922737,+	p29@RIMS1
1.37e-87	FFCP PHASE2:Hg19::chr17:72667462..72667471,+	p11@RAB37
1.37e-87	FFCP PHASE1:Hg19::chr9:135538143..135538152,-	p2@CU680380
1.37e-87	FFCP PHASE2:Hg19::chr6:72922728..72922737,+	p29@RIMS1
1.37e-87	FFCP PHASE1:Hg19::chr17:72667462..72667471,+	p11@RAB37
1.37e-87	FFCP PHASE2:Hg19::chr11:123448159..123448170,+	p4@AB384137
1.37e-87	FFCP PHASE1:Hg19::chr15:79724672..79724683,+	p1@KIAA1024
1.37e-87	FFCP PHASE1:Hg19::chr11:123448159..123448170,+	p4@AB384137
1.37e-87	FFCP PHASE2:Hg19::chr9:135538143..135538152,-	p2@CU680380
1.37e-87	FFCP PHASE1:Hg19::chr17:72857611..72857619,-	p@chr17:72857611..72857619, -
1.37e-87	FFCP PHASE2:Hg19::chr17:50236110..50236119,-	p22@CA10
1.37e-87	FFCP PHASE2:Hg19::chr15:79724672..79724683,+	p1@KIAA1024
1.37e-87	FFCP PHASE2:Hg19::chr17:72857611..72857619,-	p@chr17:72857611..72857619, -
1.37e-87	FFCP PHASE1:Hg19::chr17:50236110..50236119,-	p22@CA10
3.19e-78	FFCP PHASE2:Hg19::chr11:122733138..122733178,+	p3@CRTAM
3.19e-78	FFCP PHASE2:Hg19::chr5:20575610..20575619,-	p11@CDH18
3.19e-78	FFCP PHASE1:Hg19::chr11:122733138..122733178,+	p3@CRTAM
3.19e-78	FFCP PHASE1:Hg19::chr5:20575610..20575619,-	p11@CDH18
2.16e-70	FFCP PHASE2:Hg19::chr9:135457457..135457468,+	p4@BARHL1
2.16e-70	FFCP PHASE1:Hg19::chr9:135457457..135457468,+	p4@BARHL1
2.58e-70	FFCP PHASE1:Hg19::chr17:72667518..72667529,+	p8@RAB37
2.58e-70	FFCP PHASE1:Hg19::chr4:117873850..117873861,-	p@chr4:117873850..117873861, -
2.58e-70	FFCP PHASE2:Hg19::chr20:30616906..30616921,-	p@chr20:30616906..30616921, -
2.58e-70	FFCP PHASE1:Hg19::chr1:159842835..159842846,-	p1@ENST00000536764
2.58e-70	FFCP PHASE2:Hg19::chr1:159842835..159842846,-	p1@ENST00000536764
2.58e-70	FFCP PHASE2:Hg19::chr4:117873850..117873861,-	p@chr4:117873850..117873861, -
2.58e-70	FFCP PHASE2:Hg19::chr17:72667518..72667529,+	p8@RAB37
2.58e-70	FFCP PHASE1:Hg19::chr20:30616906..30616921,-	p@chr20:30616906..30616921, -
3.09e-70	FFCP PHASE1:Hg19::chr20:62795787..62795793,+	p8@MYT1
3.09e-70	FFCP PHASE1:Hg19::chr17:50235999..50236008,-	p21@CA10
3.09e-70	FFCP PHASE2:Hg19::chr17:50235999..50236008,-	p21@CA10
3.09e-70	FFCP PHASE2:Hg19::chr20:62795787..62795793,+	p8@MYT1
9.93e-69	FFCP PHASE1:Hg19::chr22:26565113..26565124,+	p7@SEZ6L
9.93e-69	FFCP PHASE2:Hg19::chr22:26565113..26565124,+	p7@SEZ6L
3.04e-66	FFCP PHASE2:Hg19::chr2:72381655..72381673,-	p@chr2:72381655..72381673, -
3.04e-66	FFCP PHASE1:Hg19::chr2:72381655..72381673,-	p@chr2:72381655..72381673, -
3.75e-66	FFCP PHASE1:Hg19::chr11:64146203..64146207,+	p@chr11:64146203..64146207, +
3.75e-66	FFCP PHASE1:Hg19::chr11:108438755..108438763,-	p20@EXPH5
3.75e-66	FFCP PHASE1:Hg19::chr1:24526024..24526028,+	p@chr1:24526024..24526028, +
3.75e-66	FFCP PHASE1:Hg19::chr12:72667119..72667130,+	p16@TRHDE
3.75e-66	FFCP PHASE1:Hg19::chr1:206611115..206611119,+	p@chr1:206611115..206611119, +
3.75e-66	FFCP PHASE1:Hg19::chr11:122733093..122733100,+	p8@CRTAM
3.75e-66	FFCP PHASE1:Hg19::chr13:100633194..100633202,+	p6@AK298232
3.75e-66	FFCP PHASE1:Hg19::chr14:79746650..79746659,+	p23@NRXN3
3.75e-66	FFCP PHASE1:Hg19::chr16:3656599..3656608,-	p@chr16:3656599..3656608, -
3.75e-66	FFCP PHASE1:Hg19::chr19:6501233..6501243,-	p@chr19:6501233..6501243, -
3.75e-66	FFCP PHASE1:Hg19::chr1:2241890..2241895,-	p@chr1:2241890..2241895, -
3.75e-66	FFCP PHASE1:Hg19::chr1:228602576..228602587,-	p1@CU689740
3.75e-66	FFCP PHASE1:Hg19::chr16:49357829..49357832,+	p@chr16:49357829..49357832, +
3.75e-66	FFCP PHASE1:Hg19::chr20:45062007..45062020,+	p7@AK054905
3.75e-66	FFCP PHASE1:Hg19::chr14:77582887..77582896,+	p12@TMEM63C
3.75e-66	FFCP PHASE1:Hg19::chr11:133821982..133821993,-	p@chr11:133821982..133821993, -
3.75e-66	FFCP PHASE1:Hg19::chr21:47268058..47268079,+	p5@PCBP3
3.75e-66	FFCP PHASE1:Hg19::chr11:133902562..133902580,+	p1@ENST00000529070
3.75e-66	FFCP PHASE1:Hg19::chr17:48545700..48545707,+	p5@ACSF2
3.75e-66	FFCP PHASE1:Hg19::chr17:39553443..39553452,-	p2@KRT31
3.75e-66	FFCP PHASE1:Hg19::chr17:72673771..72673779,-	p@chr17:72673771..72673779, -
3.75e-66	FFCP PHASE1:Hg19::chr1:1953233..1953242,-	p@chr1:1953233..1953242, -
3.75e-66	FFCP PHASE1:Hg19::chr16:23419354..23419361,+	p@chr16:23419354..23419361, +
3.75e-66	FFCP PHASE1:Hg19::chr10:71562284..71562291,+	p14@COL13A1
3.75e-66	FFCP PHASE1:Hg19::chr18:8783620..8783627,+	p@chr18:8783620..8783627, +
3.75e-66	FFCP PHASE1:Hg19::chr17:72667207..72667214,+	p12@RAB37
3.75e-66	FFCP PHASE1:Hg19::chr16:3656616..3656628,-	p@chr16:3656616..3656628, -
3.75e-66	FFCP PHASE1:Hg19::chr21:47314143..47314154,-	p@chr21:47314143..47314154, -
3.75e-66	FFCP PHASE1:Hg19::chr11:123396575..123396583,+	p9@GRAMD1B
3.75e-66	FFCP PHASE1:Hg19::chr13:42792979..42793012,+	p@chr13:42792979..42793012, +
3.75e-66	FFCP PHASE1:Hg19::chr17:72667483..72667484,+	p18@RAB37
3.75e-66	FFCP PHASE1:Hg19::chr1:59775752..59775763,+	p19@FGGY
3.75e-66	FFCP PHASE1:Hg19::chr16:608967..608994,+	p@chr16:608967..608994, +
3.75e-66	FFCP PHASE1:Hg19::chr20:30616884..30616898,-	p@chr20:30616884..30616898, -
3.75e-66	FFCP PHASE1:Hg19::chr22:17891551..17891560,+	p@chr22:17891551..17891560, +
3.75e-66	FFCP PHASE1:Hg19::chr19:17992758..17992791,+	p@chr19:17992758..17992791, +
3.75e-66	FFCP PHASE1:Hg19::chr10:122216316..122216327,+	p5@PPAPDC1A
3.75e-66	FFCP PHASE1:Hg19::chr14:60048980..60048989,-	p@chr14:60048980..60048989, -
3.75e-66	FFCP PHASE1:Hg19::chr15:81489344..81489353,+	p31@IL16
3.75e-66	FFCP PHASE1:Hg19::chr16:87376991..87377002,-	p@chr16:87376991..87377002, -
3.75e-66	FFCP PHASE1:Hg19::chr11:65999312..65999320,+	p30@PACS1
3.75e-66	FFCP PHASE1:Hg19::chr21:32624498..32624505,-	p@chr21:32624498..32624505, -
3.75e-66	FFCP PHASE1:Hg19::chr16:87377029..87377039,-	p@chr16:87377029..87377039, -
3.75e-66	FFCP PHASE1:Hg19::chr17:588406..588409,-	p@chr17:588406..588409, -
3.75e-66	FFCP PHASE1:Hg19::chr20:45062215..45062225,+	p4@AK054905
3.75e-66	FFCP PHASE1:Hg19::chr1:46639505..46639517,+	p@chr1:46639505..46639517, +
3.75e-66	FFCP PHASE1:Hg19::chr20:45062029..45062044,+	p6@AK054905
3.75e-66	FFCP PHASE1:Hg19::chr1:190445111..190445122,-	p15@FAM5C
3.75e-66	FFCP PHASE1:Hg19::chr1:244355163..244355179,+	p@chr1:244355163..244355179, +
3.75e-66	FFCP PHASE1:Hg19::chr20:45061929..45061936,+	p8@AK054905
3.75e-66	FFCP PHASE1:Hg19::chr16:612039..612048,-	p@chr16:612039..612048, -
3.75e-66	FFCP PHASE1:Hg19::chr13:100633107..100633110,+	p7@AK298232
3.75e-66	FFCP PHASE1:Hg19::chr14:24898354..24898366,-	p8@CBLN3
3.75e-66	FFCP PHASE1:Hg19::chr18:66918040..66918047,-	p@chr18:66918040..66918047, -
3.75e-66	FFCP PHASE1:Hg19::chr20:45062290..45062300,+	p3@AK054905
3.75e-66	FFCP PHASE1:Hg19::chr1:244355180..244355201,+	p@chr1:244355180..244355201, +
3.75e-66	FFCP PHASE1:Hg19::chr11:104480062..104480069,-	p3@ENST00000538641
3.75e-66	FFCP PHASE1:Hg19::chr12:78430875..78430887,+	p1@AB384547
3.75e-66	FFCP PHASE1:Hg19::chr14:77582934..77582947,+	p9@TMEM63C
3.75e-66	FFCP PHASE1:Hg19::chr18:39687774..39687782,+	p@chr18:39687774..39687782, +
3.75e-66	FFCP PHASE1:Hg19::chr20:45061641..45061646,-	p13@ELMO2
3.75e-66	FFCP PHASE1:Hg19::chr1:106499338..106499354,+	p@chr1:106499338..106499354, +

Showing 1 to 100 of 100 entries

@@ Line 5: / Line 5: @@
 |def="A regional part of brain that is part of a metencephalon [Obol]." [OBOL:automatic]
 |xref=FMA:67942;;NIF_GrossAnatomy:birnlex_1361
-|is_a=UBERON:0000477;;UBERON:0002616
+|is_a=UBERON:0000477;;UBERON:0002616;;UBERON:0010314
 |synonym="anatomical structure of brain of epencephalon-2" EXACT [OBOL:automatic];;"anatomical structure of brain of metencephalon" EXACT [OBOL:automatic];;"biological structure of brain of epencephalon-2" EXACT [OBOL:automatic];;"biological structure of brain of metencephalon" EXACT [OBOL:automatic];;"brain anatomical structure of epencephalon-2" EXACT [OBOL:automatic];;"brain anatomical structure of metencephalon" EXACT [OBOL:automatic];;"brain biological structure of epencephalon-2" EXACT [OBOL:automatic];;"brain biological structure of metencephalon" EXACT [OBOL:automatic];;"epencephalon-2 anatomical structure of brain" EXACT [OBOL:automatic];;"epencephalon-2 biological structure of brain" EXACT [OBOL:automatic];;"epencephalon-2 brain anatomical structure" EXACT [OBOL:automatic];;"epencephalon-2 brain biological structure" EXACT [OBOL:automatic];;"epencephalon-2 neuraxis segment" EXACT [OBOL:automatic];;"epencephalon-2 regional part of brain" EXACT [OBOL:automatic];;"epencephalon-2 segment of brain" EXACT [OBOL:automatic];;"metencephalon anatomical structure of brain" EXACT [OBOL:automatic];;"metencephalon biological structure of brain" EXACT [OBOL:automatic];;"metencephalon brain anatomical structure" EXACT [OBOL:automatic];;"metencephalon brain biological structure" EXACT [OBOL:automatic];;"metencephalon neuraxis segment" EXACT [OBOL:automatic];;"metencephalon regional part of brain" EXACT [OBOL:automatic];;"metencephalon segment of brain" EXACT [OBOL:automatic];;"metencephalon subdivision" EXACT [FMA:67942];;"neuraxis segment of epencephalon-2" EXACT [OBOL:automatic];;"neuraxis segment of metencephalon" EXACT [OBOL:automatic];;"regional part of brain of epencephalon-2" EXACT [OBOL:automatic];;"regional part of brain of metencephalon" EXACT [OBOL:automatic];;"segment of brain of epencephalon-2" EXACT [OBOL:automatic];;"segment of brain of metencephalon" EXACT [OBOL:automatic];;"segment of metencephalon" EXACT [NIF_GrossAnatomy:birnlex_1361]
 |comment=
@@ Line 14: / Line 14: @@
 |obo_creation_date=
 |subset=
-|adjacent_to=
 |derives_from=
 |develops_from=
 |has_quality=
 |located_in=
-|part_of=UBERON:0001895
+|part_of=
 |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
 |is_obsolete=
 |preceded_by=
 }}

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UBERON:0002680: Difference between revisions

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Revision as of 17:02, 26 June 2012

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