UBERON:0003128: Difference between revisions
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|def="Upper portion of the skull that excludes the mandible (when present in the organism)." [Wikipedia:Cranium_(anatomy)] | |def="Upper portion of the skull that excludes the mandible (when present in the organism)." [Wikipedia:Cranium_(anatomy)] | ||
|xref= | |xref=BTO:0001328;;EFO:0000831;;EHDAA:6029;;FMA:71325;;MA:0000316;;MAT:0000340;;MIAA:0000340;;OpenCyc:Mx4rvVlEyJwpEbGdrcN5Y29ycA;;SCTID:181889008;;VHOG:0000334 | ||
|is_a=UBERON: | |is_a=UBERON:0000075 | ||
|synonym="bones of cranium" EXACT [FMA:71325];;"calvarium" RELATED [BTO:0001328 | |synonym="bones of cranium" EXACT [FMA:71325];;"calvarium" RELATED [BTO:0001328];;"epicranial plate" RELATED [];;"ossa cranii" EXACT [FMA:71325, FMA:TA];;"skeletal system of head" RELATED [];;"skull minus mandible" EXACT [];;"upper part of skull" EXACT [] | ||
|comment=The term cranium can be ambiguous, in that it can refer to the neurocranium, or the neurocranium and the Facial skeleton[WP]. | |comment=The term cranium can be ambiguous, in that it can refer to the neurocranium, or the neurocranium and the Facial skeleton[WP]. AO notes: the inclusion of the FMA class here is probably not quite correct, as this class includes as parts sutures, whereas this is not part of the bones of the cranium | ||
|alt_id= | |alt_id= | ||
|disjoint_from= | |disjoint_from= | ||
| Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset=uberon_slim;;vertebrate_core | |subset=uberon_slim;;vertebrate_core | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0001684 | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 17:03, 26 June 2012
| Name: | cranium | ||
|---|---|---|---|
| Definition: | "Upper portion of the skull that excludes the mandible (when present in the organism)." [Wikipedia:Cranium_(anatomy)] | ||
| Xrefs: |
| ||
| Synonyms: |
"bones of cranium" EXACT [FMA:71325] "calvarium" RELATED [BTO:0001328] "epicranial plate" RELATED [] "ossa cranii" EXACT [FMA:71325, FMA:TA] "skeletal system of head" RELATED [] "skull minus mandible" EXACT [] "upper part of skull" EXACT [] | ||
| Comments: | The term cranium can be ambiguous, in that it can refer to the neurocranium, or the neurocranium and the Facial skeleton[WP]. AO notes: the inclusion of the FMA class here is probably not quite correct, as this class includes as parts sutures, whereas this is not part of the bones of the cranium | ||
| Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000075(subdivision of skeletal system) |
|---|
Children
| part of: | UBERON:0001703 (neurocranium),UBERON:0004339 (calvarium),UBERON:0004766 (cranial bone) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10195-103E6 (olfactory region, adult)
- 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
- 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
- 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
- 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
- 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
- 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)
Mouse (Mus musculus)
- 10195-103E6 (olfactory region, adult)
- 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
- 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
- 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
- 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
- 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
- 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003128 (cranium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:30619443..30619450,-#_c07e35bfbcad3a9ca1580153639f40d6 | p13@Tsga14 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:102123554..102123566,+#_c07e35bfbcad3a9ca1580153639f40d6 | p4@BC030867 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:144115382..144115389,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr5:144115382..144115389, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr8:13425469..13425503,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr8:13425469..13425503, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:65641779..65641790,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr15:65641779..65641790, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:78257518..78257522,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr13:78257518..78257522, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:58283583..58283607,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr13:58283583..58283607, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:75421384..75421397,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr11:75421384..75421397, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:4689837..4689845,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr11:4689837..4689845, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:154459231..154459240,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr3:154459231..154459240, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:67011956..67011967,+#_c07e35bfbcad3a9ca1580153639f40d6 | p1@Gm1322 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:60561636..60561645,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr1:60561636..60561645, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:12848147..12848162,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr15:12848147..12848162, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:48087761..48087775,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr13:48087761..48087775, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:27252925..27252939,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr17:27252925..27252939, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:86745686..86745727,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr6:86745686..86745727, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:4689776..4689785,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr11:4689776..4689785, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:107349418..107349423,-#_c07e35bfbcad3a9ca1580153639f40d6 | p5@Otogl |
| 1.87e-86 | FFCP PHASE2:Mm9::chr12:13572961..13572974,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr12:13572961..13572974, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:69811590..69811601,+#_c07e35bfbcad3a9ca1580153639f40d6 | p1@Otol1 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:58022966..58022995,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr15:58022966..58022995, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:14685072..14685084,+#_c07e35bfbcad3a9ca1580153639f40d6 | p41@Cacnb2 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:13983198..13983203,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr17:13983198..13983203, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:94627290..94627299,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr1:94627290..94627299, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:30710416..30710440,-#_c07e35bfbcad3a9ca1580153639f40d6 | p2@Otof |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:37195838..37195870,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr13:37195838..37195870, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:103146966..103146971,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr15:103146966..103146971, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:92087926..92087938,+#_c07e35bfbcad3a9ca1580153639f40d6 | p2@Plscr5 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:172843847..172843880,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr1:172843847..172843880, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr4:133802857..133802884,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr4:133802857..133802884, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr16:96494788..96494801,+#_c07e35bfbcad3a9ca1580153639f40d6 | p12@B3galt5 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:78322383..78322395,-#_c07e35bfbcad3a9ca1580153639f40d6 | p2@uc007rhb.1 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:182528388..182528403,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr1:182528388..182528403, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207998..42208009,-#_c07e35bfbcad3a9ca1580153639f40d6 | p6@Tecta |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:107156949..107156956,-#_c07e35bfbcad3a9ca1580153639f40d6 | p3@Ptprq |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:154459246..154459253,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr3:154459246..154459253, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr8:13425469..13425503,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr8:13425469..13425503, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:29428397..29428407,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr6:29428397..29428407, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr4:115556939..115556945,+#_c07e35bfbcad3a9ca1580153639f40d6 | p4@Kncn |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:13983095..13983100,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr17:13983095..13983100, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:89702580..89702593,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr11:89702580..89702593, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:65641779..65641790,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr15:65641779..65641790, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr12:109905468..109905474,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr12:109905468..109905474, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207397..42207408,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr9:42207397..42207408, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:78523144..78523177,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr1:78523144..78523177, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr16:93971367..93971379,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr16:93971367..93971379, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:97109753..97109764,+#_c07e35bfbcad3a9ca1580153639f40d6 | p3@Epyc |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:29733825..29733837,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr7:29733825..29733837, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:121206695..121206711,-#_c07e35bfbcad3a9ca1580153639f40d6 | p1@Strc |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:58022966..58022995,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr15:58022966..58022995, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:22767090..22767099,+#_c07e35bfbcad3a9ca1580153639f40d6 | p18@Trpm3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr18:81314626..81314636,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr18:81314626..81314636, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:75320183..75320189,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr2:75320183..75320189, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:121206695..121206711,-#_c07e35bfbcad3a9ca1580153639f40d6 | p1@Strc |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:147854240..147854249,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr5:147854240..147854249, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr18:42158627..42158630,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr18:42158627..42158630, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:10536767..10536777,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr19:10536767..10536777, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:170417150..170417155,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr2:170417150..170417155, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:53464168..53464175,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr2:53464168..53464175, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr18:66033526..66033539,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr18:66033526..66033539, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:89215333..89215341,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr15:89215333..89215341, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr14:31283085..31283097,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr14:31283085..31283097, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:29428397..29428407,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr6:29428397..29428407, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:43699228..43699239,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr13:43699228..43699239, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr16:96494788..96494801,+#_c07e35bfbcad3a9ca1580153639f40d6 | p12@B3galt5 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:55255289..55255299,+#_c07e35bfbcad3a9ca1580153639f40d6 | p2@Tectb |
| 1.87e-86 | FFCP PHASE2:Mm9::chr12:13508015..13508019,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr12:13508015..13508019, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr16:45693840..45693856,-#_c07e35bfbcad3a9ca1580153639f40d6 | p1@Tmprss7 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:97806034..97806061,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr15:97806034..97806061, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr14:31283072..31283081,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr14:31283072..31283081, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207998..42208009,-#_c07e35bfbcad3a9ca1580153639f40d6 | p6@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:113251606..113251613,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr6:113251606..113251613, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:130461150..130461185,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr4:130461150..130461185, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:13983095..13983100,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr17:13983095..13983100, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chrX:154140781..154140788,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chrX:154140781..154140788, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:69811606..69811616,+#_c07e35bfbcad3a9ca1580153639f40d6 | p2@Otol1 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:107349392..107349413,-#_c07e35bfbcad3a9ca1580153639f40d6 | p2@Otogl |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:85334335..85334353,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr15:85334335..85334353, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:93218682..93218691,+#_c07e35bfbcad3a9ca1580153639f40d6 | p2@Espnl |
| 1.87e-86 | FFCP PHASE2:Mm9::chr4:154208086..154208123,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr4:154208086..154208123, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr12:109905399..109905416,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr12:109905399..109905416, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:43699228..43699239,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr13:43699228..43699239, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:85334335..85334353,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr15:85334335..85334353, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207397..42207408,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr9:42207397..42207408, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:113251614..113251623,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr6:113251614..113251623, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:80806047..80806059,-#_c07e35bfbcad3a9ca1580153639f40d6 | p4@Gipc3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:78257454..78257465,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr13:78257454..78257465, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207852..42207876,-#_c07e35bfbcad3a9ca1580153639f40d6 | p2@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:29733825..29733837,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr7:29733825..29733837, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:93235228..93235249,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr1:93235228..93235249, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:78322370..78322376,-#_c07e35bfbcad3a9ca1580153639f40d6 | p4@uc007rhb.1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:109052262..109052291,-#_c07e35bfbcad3a9ca1580153639f40d6 | p1@Tomt |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:152453066..152453075,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr2:152453066..152453075, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr18:38104702..38104718,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr18:38104702..38104718, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:41495920..41495928,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr9:41495920..41495928, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:28035962..28035983,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr5:28035962..28035983, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:101908153..101908163,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr4:101908153..101908163, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:154459246..154459253,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr3:154459246..154459253, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42206730..42206739,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr9:42206730..42206739, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:63733478..63733491,-#_c07e35bfbcad3a9ca1580153639f40d6 | p1@Dytn |
