UBERON:0003661: Difference between revisions
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|def="A muscle organ that is part of a limb [Obol]." [OBOL:automatic] | |def="A muscle organ that is part of a limb [Obol]." [OBOL:automatic] | ||
|xref=MA:0000692 | |xref=MA:0000692 | ||
|is_a=UBERON:0001630 | |is_a=UBERON:0001630;;UBERON:0004120 | ||
|synonym="limb muscle organ" EXACT [OBOL:automatic];;"muscle organ of limb" EXACT [OBOL:automatic] | |synonym="limb muscle organ" EXACT [OBOL:automatic];;"muscle organ of limb" EXACT [OBOL:automatic] | ||
|comment= | |comment= | ||
| Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 17:03, 26 June 2012
| Name: | limb muscle | ||
|---|---|---|---|
| Definition: | "A muscle organ that is part of a limb [Obol]." [OBOL:automatic] | ||
| Xrefs: |
| ||
| Synonyms: |
"limb muscle organ" EXACT [OBOL:automatic] "muscle organ of limb" EXACT [OBOL:automatic] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0001630(muscle organ),UBERON:0004120(mesoderm-derived structure) |
|---|
Children
| is a: | UBERON:0003663 (hindlimb muscle) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10264-104D3
- 10281-104F2
- 10282-104F3 (skeletal muscle - soleus muscle, donor1)
- 10292-104G4 (achilles tendon, donor2)
- 10309-104I3
- 10310-104I4
- 10320-105A5
- 10337-105C4
- 10338-105C5
- 1389-42C2 (muscle (biceps femoris), neonate N30)
Mouse (Mus musculus)
- 10264-104D3
- 10281-104F2
- 10282-104F3 (skeletal muscle - soleus muscle, donor1)
- 10292-104G4 (achilles tendon, donor2)
- 10309-104I3
- 10310-104I4
- 10320-105A5
- 10337-105C4
- 10338-105C5
- 1389-42C2 (muscle (biceps femoris), neonate N30)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003661 (limb muscle), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE2:Hg19::chr2:76859417..76859418,+#_6b89c0a372c1f5adf83831ee9600fa14 | p@chr2:76859417..76859418, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr4:186423235..186423240,-#_6b89c0a372c1f5adf83831ee9600fa14 | p@chr4:186423235..186423240, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr22:25535147..25535150,+#_6b89c0a372c1f5adf83831ee9600fa14 | p@chr22:25535147..25535150, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr10:97176812..97176813,+#_6b89c0a372c1f5adf83831ee9600fa14 | p@chr10:97176812..97176813, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr2:76859417..76859418,+#_6b89c0a372c1f5adf83831ee9600fa14 | p@chr2:76859417..76859418, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr11:3691037..3691040,+#_6b89c0a372c1f5adf83831ee9600fa14 | p@chr11:3691037..3691040, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr4:186423235..186423240,-#_6b89c0a372c1f5adf83831ee9600fa14 | p@chr4:186423235..186423240, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr2:179396370..179396375,-#_6b89c0a372c1f5adf83831ee9600fa14 | p@chr2:179396370..179396375, - |
| 5.42e-195 | FFCP PHASE1:Hg19::chr22:25535147..25535150,+#_6b89c0a372c1f5adf83831ee9600fa14 | p@chr22:25535147..25535150, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr10:97176812..97176813,+#_6b89c0a372c1f5adf83831ee9600fa14 | p@chr10:97176812..97176813, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr2:179396370..179396375,-#_6b89c0a372c1f5adf83831ee9600fa14 | p@chr2:179396370..179396375, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr7:128483294..128483304,+#_6b89c0a372c1f5adf83831ee9600fa14 | p@chr7:128483294..128483304, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr4:85166508..85166512,+#_6b89c0a372c1f5adf83831ee9600fa14 | p@chr4:85166508..85166512, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr11:3691037..3691040,+#_6b89c0a372c1f5adf83831ee9600fa14 | p@chr11:3691037..3691040, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr7:128483294..128483304,+#_6b89c0a372c1f5adf83831ee9600fa14 | p@chr7:128483294..128483304, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr4:85166508..85166512,+#_6b89c0a372c1f5adf83831ee9600fa14 | p@chr4:85166508..85166512, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr10:79759687..79759690,+#_6b89c0a372c1f5adf83831ee9600fa14 | p@chr10:79759687..79759690, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr10:79759687..79759690,+#_6b89c0a372c1f5adf83831ee9600fa14 | p@chr10:79759687..79759690, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152553958..152553964,-#_7355dca1eb97407b446ec13e34774ff7 | p@chr2:152553958..152553964, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:179514306..179514308,-#_7355dca1eb97407b446ec13e34774ff7 | p@chr2:179514306..179514308, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168104676..168104679,+#_7355dca1eb97407b446ec13e34774ff7 | p104@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152553958..152553964,-#_7355dca1eb97407b446ec13e34774ff7 | p@chr2:152553958..152553964, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152499727..152499734,-#_7355dca1eb97407b446ec13e34774ff7 | p@chr2:152499727..152499734, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:64069328..64069334,-#_7355dca1eb97407b446ec13e34774ff7 | p7@FLJ36848 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr6:33716557..33716600,-#_7355dca1eb97407b446ec13e34774ff7 | p@chr6:33716557..33716600, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:137206180..137206187,+#_7355dca1eb97407b446ec13e34774ff7 | p@chr5:137206180..137206187, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr7:66800928..66800936,+#_7355dca1eb97407b446ec13e34774ff7 | p1@ENST00000430244, p1@uc003tvu.2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168104926..168104927,+#_7355dca1eb97407b446ec13e34774ff7 | p108@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr8:144542829..144542857,-#_7355dca1eb97407b446ec13e34774ff7 | p@chr8:144542829..144542857, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152520248..152520253,-#_7355dca1eb97407b446ec13e34774ff7 | p@chr2:152520248..152520253, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152534468..152534476,-#_7355dca1eb97407b446ec13e34774ff7 | p@chr2:152534468..152534476, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:137206180..137206187,+#_7355dca1eb97407b446ec13e34774ff7 | p@chr5:137206180..137206187, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr3:188070178..188070183,+#_7355dca1eb97407b446ec13e34774ff7 | p@chr3:188070178..188070183, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr1:119487319..119487331,-#_7355dca1eb97407b446ec13e34774ff7 | p@chr1:119487319..119487331, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:117747577..117747580,+#_7355dca1eb97407b446ec13e34774ff7 | p@chr5:117747577..117747580, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168106638..168106641,+#_7355dca1eb97407b446ec13e34774ff7 | p93@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152534468..152534476,-#_7355dca1eb97407b446ec13e34774ff7 | p@chr2:152534468..152534476, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr13:51335579..51335582,+#_7355dca1eb97407b446ec13e34774ff7 | p@chr13:51335579..51335582, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr15:51060095..51060101,+#_7355dca1eb97407b446ec13e34774ff7 | p@chr15:51060095..51060101, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168102721..168102729,+#_7355dca1eb97407b446ec13e34774ff7 | p77@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr22:36000901..36000903,-#_7355dca1eb97407b446ec13e34774ff7 | p@chr22:36000901..36000903, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr3:188070178..188070183,+#_7355dca1eb97407b446ec13e34774ff7 | p@chr3:188070178..188070183, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr13:114067922..114067931,-#_7355dca1eb97407b446ec13e34774ff7 | p@chr13:114067922..114067931, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168105362..168105368,+#_7355dca1eb97407b446ec13e34774ff7 | p46@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:179399371..179399376,-#_7355dca1eb97407b446ec13e34774ff7 | p@chr2:179399371..179399376, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr1:119487319..119487331,-#_7355dca1eb97407b446ec13e34774ff7 | p@chr1:119487319..119487331, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168106638..168106641,+#_7355dca1eb97407b446ec13e34774ff7 | p93@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:117747577..117747580,+#_7355dca1eb97407b446ec13e34774ff7 | p@chr5:117747577..117747580, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:175125123..175125125,+#_7355dca1eb97407b446ec13e34774ff7 | p@chr5:175125123..175125125, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152525581..152525588,-#_7355dca1eb97407b446ec13e34774ff7 | p@chr2:152525581..152525588, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr22:36000901..36000903,-#_7355dca1eb97407b446ec13e34774ff7 | p@chr22:36000901..36000903, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:175125123..175125125,+#_7355dca1eb97407b446ec13e34774ff7 | p@chr5:175125123..175125125, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168102721..168102729,+#_7355dca1eb97407b446ec13e34774ff7 | p77@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr8:144542829..144542857,-#_7355dca1eb97407b446ec13e34774ff7 | p@chr8:144542829..144542857, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168105987..168105994,+#_7355dca1eb97407b446ec13e34774ff7 | p54@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168105362..168105368,+#_7355dca1eb97407b446ec13e34774ff7 | p46@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:172318159..172318160,+#_7355dca1eb97407b446ec13e34774ff7 | p@chr5:172318159..172318160, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr1:145478051..145478060,-#_7355dca1eb97407b446ec13e34774ff7 | p@chr1:145478051..145478060, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168104676..168104679,+#_7355dca1eb97407b446ec13e34774ff7 | p104@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:179399371..179399376,-#_7355dca1eb97407b446ec13e34774ff7 | p@chr2:179399371..179399376, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:179514306..179514308,-#_7355dca1eb97407b446ec13e34774ff7 | p@chr2:179514306..179514308, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:172318159..172318160,+#_7355dca1eb97407b446ec13e34774ff7 | p@chr5:172318159..172318160, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:64069328..64069334,-#_7355dca1eb97407b446ec13e34774ff7 | p7@FLJ36848 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr6:33716557..33716600,-#_7355dca1eb97407b446ec13e34774ff7 | p@chr6:33716557..33716600, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr15:51060095..51060101,+#_7355dca1eb97407b446ec13e34774ff7 | p@chr15:51060095..51060101, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152499727..152499734,-#_7355dca1eb97407b446ec13e34774ff7 | p@chr2:152499727..152499734, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152525581..152525588,-#_7355dca1eb97407b446ec13e34774ff7 | p@chr2:152525581..152525588, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168104926..168104927,+#_7355dca1eb97407b446ec13e34774ff7 | p108@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr7:66800928..66800936,+#_7355dca1eb97407b446ec13e34774ff7 | p1@ENST00000430244, p1@uc003tvu.2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152520248..152520253,-#_7355dca1eb97407b446ec13e34774ff7 | p@chr2:152520248..152520253, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168105987..168105994,+#_7355dca1eb97407b446ec13e34774ff7 | p54@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr1:145478051..145478060,-#_7355dca1eb97407b446ec13e34774ff7 | p@chr1:145478051..145478060, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr13:114067922..114067931,-#_7355dca1eb97407b446ec13e34774ff7 | p@chr13:114067922..114067931, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr13:51335579..51335582,+#_7355dca1eb97407b446ec13e34774ff7 | p@chr13:51335579..51335582, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr10:97037060..97037066,-#_19c34f02c06328c30d2f4aa70d3a714d | p@chr10:97037060..97037066, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr12:122884464..122884467,-#_19c34f02c06328c30d2f4aa70d3a714d | p38@CLIP1 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr6:125535391..125535409,+#_19c34f02c06328c30d2f4aa70d3a714d | p@chr6:125535391..125535409, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:46924232..46924241,+#_19c34f02c06328c30d2f4aa70d3a714d | p@chr3:46924232..46924241, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr3:35732964..35732965,+#_19c34f02c06328c30d2f4aa70d3a714d | p@chr3:35732964..35732965, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr12:69653866..69653876,+#_19c34f02c06328c30d2f4aa70d3a714d | p@chr12:69653866..69653876, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr10:29918007..29918031,-#_19c34f02c06328c30d2f4aa70d3a714d | p@chr10:29918007..29918031, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:29398214..29398229,+#_19c34f02c06328c30d2f4aa70d3a714d | p27@CLIP4 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr12:102079632..102079647,-#_19c34f02c06328c30d2f4aa70d3a714d | p@chr12:102079632..102079647, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr18:8608021..8608050,+#_19c34f02c06328c30d2f4aa70d3a714d | p@chr18:8608021..8608050, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr6:125535391..125535409,+#_19c34f02c06328c30d2f4aa70d3a714d | p@chr6:125535391..125535409, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr12:102079632..102079647,-#_19c34f02c06328c30d2f4aa70d3a714d | p@chr12:102079632..102079647, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:168102459..168102468,+#_19c34f02c06328c30d2f4aa70d3a714d | p73@XIRP2 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr3:46924232..46924241,+#_19c34f02c06328c30d2f4aa70d3a714d | p@chr3:46924232..46924241, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr22:26299595..26299605,+#_19c34f02c06328c30d2f4aa70d3a714d | p@chr22:26299595..26299605, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:152566311..152566321,-#_19c34f02c06328c30d2f4aa70d3a714d | p@chr2:152566311..152566321, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr5:95180155..95180172,+#_19c34f02c06328c30d2f4aa70d3a714d | p@chr5:95180155..95180172, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:152566311..152566321,-#_19c34f02c06328c30d2f4aa70d3a714d | p@chr2:152566311..152566321, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr21:47769234..47769239,+#_19c34f02c06328c30d2f4aa70d3a714d | p@chr21:47769234..47769239, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:168102459..168102468,+#_19c34f02c06328c30d2f4aa70d3a714d | p73@XIRP2 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr22:26299595..26299605,+#_19c34f02c06328c30d2f4aa70d3a714d | p@chr22:26299595..26299605, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:152590465..152590472,-#_19c34f02c06328c30d2f4aa70d3a714d | p@chr2:152590465..152590472, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr5:95180155..95180172,+#_19c34f02c06328c30d2f4aa70d3a714d | p@chr5:95180155..95180172, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr21:47769234..47769239,+#_19c34f02c06328c30d2f4aa70d3a714d | p@chr21:47769234..47769239, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr18:8608021..8608050,+#_19c34f02c06328c30d2f4aa70d3a714d | p@chr18:8608021..8608050, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:69168368..69168389,-#_19c34f02c06328c30d2f4aa70d3a714d | p@chr3:69168368..69168389, - |
