UBERON:0004111: Difference between revisions
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|is_a=UBERON:0000477 | |is_a=UBERON:0000477 | ||
|synonym="foramen" NARROW [EHDAA2:0003080];;"foramina" NARROW PLURAL [UBERON:cjm] | |synonym="foramen" NARROW [EHDAA2:0003080];;"foramina" NARROW PLURAL [UBERON:cjm] | ||
|comment=note that FMA has both conduit and conduit space | |comment=note that FMA has both conduit and conduit space. In EHDAA2 this is a surface feature | ||
|alt_id= | |alt_id= | ||
|disjoint_from= | |disjoint_from= | ||
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|obo_creation_date= | |obo_creation_date= | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= |
Revision as of 17:04, 26 June 2012
Name: | anatomical conduit | |
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Definition: | "any opening in the body." [Wikipedia:Foramen] | |
Xrefs: |
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Synonyms: |
"foramen" NARROW [EHDAA2:0003080] "foramina" NARROW PLURAL [UBERON:cjm] | |
Comments: | note that FMA has both conduit and conduit space. In EHDAA2 this is a surface feature |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0000477(anatomical cluster) |
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Children
is a: | UBERON:0000025 (tube),UBERON:0000055 (vessel),UBERON:0000161 (orifice),UBERON:0004145 (outflow tract),UBERON:0005744 (cranial conduit),UBERON:0015787 (upper respiratory conduit) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10019-101D1 (lung, adult, pool1)
- 10047-101G2 (tonsil, adult, pool1)
- 10052-101G7 (aorta, adult, pool1)
- 10068-101I5 (lung, fetal, donor1)
- 10075-102A3 (lung, right lower lobe, adult, donor1)
- 10090-102B9
- 10093-102C3 (salivary gland, adult, pool1)
- 10190-103E1 (artery, adult)
- 10191-103E2 (vein, adult)
- 10196-103E7 (ductus deferens, adult)
... further results Mouse (Mus musculus)
- 10019-101D1 (lung, adult, pool1)
- 10047-101G2 (tonsil, adult, pool1)
- 10052-101G7 (aorta, adult, pool1)
- 10068-101I5 (lung, fetal, donor1)
- 10075-102A3 (lung, right lower lobe, adult, donor1)
- 10090-102B9
- 10093-102C3 (salivary gland, adult, pool1)
- 10190-103E1 (artery, adult)
- 10191-103E2 (vein, adult)
- 10196-103E7 (ductus deferens, adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004111 (anatomical conduit), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data