UBERON:0004347: Difference between revisions
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|name=limb bud | |name=limb bud | ||
|namespace= | |namespace= | ||
|def="the mesenchymal outgrowth on the lateral trunk of the embryo that develops into | |def="the mesenchymal outgrowth on the lateral trunk of the embryo that develops into a limb[MP]." [MP:0005650, Wikipedia:Limb_bud] | ||
|xref=AAO:0010375;;BTO:0001640;;GAID:1307;;MESH:A.16.254.462;;ncithesaurus:Limb_Bud;;XAO:0003161 | |xref=AAO:0010375;;BTO:0001640;;GAID:1307;;MESH:A.16.254.462;;ncithesaurus:Limb_Bud;;XAO:0003161 | ||
|is_a=UBERON:0004357 | |is_a=UBERON:0004357 | ||
|synonym="limb buds" EXACT PLURAL [];;"limbbud" EXACT [GO:0060174] | |synonym="gemmae membrorum" RELATED LATIN [Wikipedia:Limb_bud];;"limb buds" EXACT PLURAL [];;"limbbud" EXACT [GO:0060174] | ||
|comment=induced_by Fgf10, capable of initiating limb forming interactions between endoderm and mesoderm | |comment=induced_by Fgf10, capable of initiating limb forming interactions between endoderm and mesoderm | ||
|alt_id= | |alt_id= | ||
| Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Early outgrowth of presumptive limb.[AAO]" xsd:string | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 17:04, 26 June 2012
| Name: | limb bud | ||
|---|---|---|---|
| Definition: | "the mesenchymal outgrowth on the lateral trunk of the embryo that develops into a limb[MP]." [MP:0005650, Wikipedia:Limb_bud] | ||
| Xrefs: |
| ||
| Synonyms: |
"gemmae membrorum" RELATED LATIN [Wikipedia:Limb_bud] "limb buds" EXACT PLURAL [] "limbbud" EXACT [GO:0060174] | ||
| Comments: | induced_by Fgf10, capable of initiating limb forming interactions between endoderm and mesoderm |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004357(paired limb/fin bud) |
|---|
Children
| is a: | UBERON:0005417 (forelimb bud),UBERON:0005418 (hindlimb bud) |
|---|---|
| develops from: | UBERON:0002101 (limb),UBERON:0010130 (autopod plate) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004347 (limb bud), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE1:Hg19::chr22:25535147..25535150,+#_2b70fa7aa129c6b1ae994f78b59895b0 | p@chr22:25535147..25535150, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr7:128483294..128483304,+#_2b70fa7aa129c6b1ae994f78b59895b0 | p@chr7:128483294..128483304, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr10:79759687..79759690,+#_2b70fa7aa129c6b1ae994f78b59895b0 | p@chr10:79759687..79759690, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr2:76859417..76859418,+#_2b70fa7aa129c6b1ae994f78b59895b0 | p@chr2:76859417..76859418, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr2:179396370..179396375,-#_2b70fa7aa129c6b1ae994f78b59895b0 | p@chr2:179396370..179396375, - |
| 5.42e-195 | FFCP PHASE1:Hg19::chr4:186423235..186423240,-#_2b70fa7aa129c6b1ae994f78b59895b0 | p@chr4:186423235..186423240, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr4:186423235..186423240,-#_2b70fa7aa129c6b1ae994f78b59895b0 | p@chr4:186423235..186423240, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr2:76859417..76859418,+#_2b70fa7aa129c6b1ae994f78b59895b0 | p@chr2:76859417..76859418, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr22:25535147..25535150,+#_2b70fa7aa129c6b1ae994f78b59895b0 | p@chr22:25535147..25535150, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr10:79759687..79759690,+#_2b70fa7aa129c6b1ae994f78b59895b0 | p@chr10:79759687..79759690, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr10:97176812..97176813,+#_2b70fa7aa129c6b1ae994f78b59895b0 | p@chr10:97176812..97176813, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr2:179396370..179396375,-#_2b70fa7aa129c6b1ae994f78b59895b0 | p@chr2:179396370..179396375, - |
| 5.42e-195 | FFCP PHASE1:Hg19::chr4:85166508..85166512,+#_2b70fa7aa129c6b1ae994f78b59895b0 | p@chr4:85166508..85166512, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr7:128483294..128483304,+#_2b70fa7aa129c6b1ae994f78b59895b0 | p@chr7:128483294..128483304, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr10:97176812..97176813,+#_2b70fa7aa129c6b1ae994f78b59895b0 | p@chr10:97176812..97176813, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr11:3691037..3691040,+#_2b70fa7aa129c6b1ae994f78b59895b0 | p@chr11:3691037..3691040, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr4:85166508..85166512,+#_2b70fa7aa129c6b1ae994f78b59895b0 | p@chr4:85166508..85166512, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr11:3691037..3691040,+#_2b70fa7aa129c6b1ae994f78b59895b0 | p@chr11:3691037..3691040, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152534468..152534476,-#_4e40f97ba5019b2926d94b53c38c28f4 | p@chr2:152534468..152534476, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:172318159..172318160,+#_4e40f97ba5019b2926d94b53c38c28f4 | p@chr5:172318159..172318160, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr1:145478051..145478060,-#_4e40f97ba5019b2926d94b53c38c28f4 | p@chr1:145478051..145478060, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152525581..152525588,-#_4e40f97ba5019b2926d94b53c38c28f4 | p@chr2:152525581..152525588, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:64069328..64069334,-#_4e40f97ba5019b2926d94b53c38c28f4 | p7@FLJ36848 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168104676..168104679,+#_4e40f97ba5019b2926d94b53c38c28f4 | p104@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr6:33716557..33716600,-#_4e40f97ba5019b2926d94b53c38c28f4 | p@chr6:33716557..33716600, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr7:66800928..66800936,+#_4e40f97ba5019b2926d94b53c38c28f4 | p1@ENST00000430244, p1@uc003tvu.2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:64069328..64069334,-#_4e40f97ba5019b2926d94b53c38c28f4 | p7@FLJ36848 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr6:33716557..33716600,-#_4e40f97ba5019b2926d94b53c38c28f4 | p@chr6:33716557..33716600, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr13:114067922..114067931,-#_4e40f97ba5019b2926d94b53c38c28f4 | p@chr13:114067922..114067931, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168104926..168104927,+#_4e40f97ba5019b2926d94b53c38c28f4 | p108@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168105987..168105994,+#_4e40f97ba5019b2926d94b53c38c28f4 | p54@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr1:119487319..119487331,-#_4e40f97ba5019b2926d94b53c38c28f4 | p@chr1:119487319..119487331, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:179514306..179514308,-#_4e40f97ba5019b2926d94b53c38c28f4 | p@chr2:179514306..179514308, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168106638..168106641,+#_4e40f97ba5019b2926d94b53c38c28f4 | p93@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr13:114067922..114067931,-#_4e40f97ba5019b2926d94b53c38c28f4 | p@chr13:114067922..114067931, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152553958..152553964,-#_4e40f97ba5019b2926d94b53c38c28f4 | p@chr2:152553958..152553964, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152499727..152499734,-#_4e40f97ba5019b2926d94b53c38c28f4 | p@chr2:152499727..152499734, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:137206180..137206187,+#_4e40f97ba5019b2926d94b53c38c28f4 | p@chr5:137206180..137206187, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr22:36000901..36000903,-#_4e40f97ba5019b2926d94b53c38c28f4 | p@chr22:36000901..36000903, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168102721..168102729,+#_4e40f97ba5019b2926d94b53c38c28f4 | p77@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr7:66800928..66800936,+#_4e40f97ba5019b2926d94b53c38c28f4 | p1@ENST00000430244, p1@uc003tvu.2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152520248..152520253,-#_4e40f97ba5019b2926d94b53c38c28f4 | p@chr2:152520248..152520253, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168105362..168105368,+#_4e40f97ba5019b2926d94b53c38c28f4 | p46@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:179399371..179399376,-#_4e40f97ba5019b2926d94b53c38c28f4 | p@chr2:179399371..179399376, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr15:51060095..51060101,+#_4e40f97ba5019b2926d94b53c38c28f4 | p@chr15:51060095..51060101, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152525581..152525588,-#_4e40f97ba5019b2926d94b53c38c28f4 | p@chr2:152525581..152525588, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr3:188070178..188070183,+#_4e40f97ba5019b2926d94b53c38c28f4 | p@chr3:188070178..188070183, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:137206180..137206187,+#_4e40f97ba5019b2926d94b53c38c28f4 | p@chr5:137206180..137206187, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168105987..168105994,+#_4e40f97ba5019b2926d94b53c38c28f4 | p54@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr1:145478051..145478060,-#_4e40f97ba5019b2926d94b53c38c28f4 | p@chr1:145478051..145478060, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152534468..152534476,-#_4e40f97ba5019b2926d94b53c38c28f4 | p@chr2:152534468..152534476, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:117747577..117747580,+#_4e40f97ba5019b2926d94b53c38c28f4 | p@chr5:117747577..117747580, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr3:188070178..188070183,+#_4e40f97ba5019b2926d94b53c38c28f4 | p@chr3:188070178..188070183, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr13:51335579..51335582,+#_4e40f97ba5019b2926d94b53c38c28f4 | p@chr13:51335579..51335582, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr1:119487319..119487331,-#_4e40f97ba5019b2926d94b53c38c28f4 | p@chr1:119487319..119487331, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:179514306..179514308,-#_4e40f97ba5019b2926d94b53c38c28f4 | p@chr2:179514306..179514308, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168104676..168104679,+#_4e40f97ba5019b2926d94b53c38c28f4 | p104@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:175125123..175125125,+#_4e40f97ba5019b2926d94b53c38c28f4 | p@chr5:175125123..175125125, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152553958..152553964,-#_4e40f97ba5019b2926d94b53c38c28f4 | p@chr2:152553958..152553964, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152499727..152499734,-#_4e40f97ba5019b2926d94b53c38c28f4 | p@chr2:152499727..152499734, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168104926..168104927,+#_4e40f97ba5019b2926d94b53c38c28f4 | p108@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr8:144542829..144542857,-#_4e40f97ba5019b2926d94b53c38c28f4 | p@chr8:144542829..144542857, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr15:51060095..51060101,+#_4e40f97ba5019b2926d94b53c38c28f4 | p@chr15:51060095..51060101, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168102721..168102729,+#_4e40f97ba5019b2926d94b53c38c28f4 | p77@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152520248..152520253,-#_4e40f97ba5019b2926d94b53c38c28f4 | p@chr2:152520248..152520253, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr8:144542829..144542857,-#_4e40f97ba5019b2926d94b53c38c28f4 | p@chr8:144542829..144542857, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:172318159..172318160,+#_4e40f97ba5019b2926d94b53c38c28f4 | p@chr5:172318159..172318160, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:117747577..117747580,+#_4e40f97ba5019b2926d94b53c38c28f4 | p@chr5:117747577..117747580, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168105362..168105368,+#_4e40f97ba5019b2926d94b53c38c28f4 | p46@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168106638..168106641,+#_4e40f97ba5019b2926d94b53c38c28f4 | p93@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr13:51335579..51335582,+#_4e40f97ba5019b2926d94b53c38c28f4 | p@chr13:51335579..51335582, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:179399371..179399376,-#_4e40f97ba5019b2926d94b53c38c28f4 | p@chr2:179399371..179399376, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr22:36000901..36000903,-#_4e40f97ba5019b2926d94b53c38c28f4 | p@chr22:36000901..36000903, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:175125123..175125125,+#_4e40f97ba5019b2926d94b53c38c28f4 | p@chr5:175125123..175125125, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:179656442..179656451,-#_1c1f84dfd582b5d978eec6a804d8846e | p@chr2:179656442..179656451, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:152566311..152566321,-#_1c1f84dfd582b5d978eec6a804d8846e | p@chr2:152566311..152566321, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:168102459..168102468,+#_1c1f84dfd582b5d978eec6a804d8846e | p73@XIRP2 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr3:35732964..35732965,+#_1c1f84dfd582b5d978eec6a804d8846e | p@chr3:35732964..35732965, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr12:69653866..69653876,+#_1c1f84dfd582b5d978eec6a804d8846e | p@chr12:69653866..69653876, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr22:26299595..26299605,+#_1c1f84dfd582b5d978eec6a804d8846e | p@chr22:26299595..26299605, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:29398214..29398229,+#_1c1f84dfd582b5d978eec6a804d8846e | p27@CLIP4 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:69168368..69168389,-#_1c1f84dfd582b5d978eec6a804d8846e | p@chr3:69168368..69168389, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:35732964..35732965,+#_1c1f84dfd582b5d978eec6a804d8846e | p@chr3:35732964..35732965, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:29398214..29398229,+#_1c1f84dfd582b5d978eec6a804d8846e | p27@CLIP4 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr6:125535391..125535409,+#_1c1f84dfd582b5d978eec6a804d8846e | p@chr6:125535391..125535409, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr3:46924232..46924241,+#_1c1f84dfd582b5d978eec6a804d8846e | p@chr3:46924232..46924241, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr10:97037060..97037066,-#_1c1f84dfd582b5d978eec6a804d8846e | p@chr10:97037060..97037066, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:46924232..46924241,+#_1c1f84dfd582b5d978eec6a804d8846e | p@chr3:46924232..46924241, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr21:47769234..47769239,+#_1c1f84dfd582b5d978eec6a804d8846e | p@chr21:47769234..47769239, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr10:29918007..29918031,-#_1c1f84dfd582b5d978eec6a804d8846e | p@chr10:29918007..29918031, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:152590465..152590472,-#_1c1f84dfd582b5d978eec6a804d8846e | p@chr2:152590465..152590472, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr12:122884464..122884467,-#_1c1f84dfd582b5d978eec6a804d8846e | p38@CLIP1 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr6:125535391..125535409,+#_1c1f84dfd582b5d978eec6a804d8846e | p@chr6:125535391..125535409, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:168102459..168102468,+#_1c1f84dfd582b5d978eec6a804d8846e | p73@XIRP2 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr5:95180155..95180172,+#_1c1f84dfd582b5d978eec6a804d8846e | p@chr5:95180155..95180172, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:179656442..179656451,-#_1c1f84dfd582b5d978eec6a804d8846e | p@chr2:179656442..179656451, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:152566311..152566321,-#_1c1f84dfd582b5d978eec6a804d8846e | p@chr2:152566311..152566321, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr12:122884464..122884467,-#_1c1f84dfd582b5d978eec6a804d8846e | p38@CLIP1 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr12:102079632..102079647,-#_1c1f84dfd582b5d978eec6a804d8846e | p@chr12:102079632..102079647, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr12:69653866..69653876,+#_1c1f84dfd582b5d978eec6a804d8846e | p@chr12:69653866..69653876, + |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Early outgrowth of presumptive limb.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
