UBERON:0007123: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 4: | Line 4: | ||
|namespace= | |namespace= | ||
|def="The second pouch between the second and third arches. Contributes to the middle ear, epithelial lining of Crypts (spaces) of the palatine tonsils, supplied by the facial nerve[WP]" [PMID:16313389, Wikipedia:Pharyngeal_pouch_(embryology)#Second_pouch] | |def="The second pouch between the second and third arches. Contributes to the middle ear, epithelial lining of Crypts (spaces) of the palatine tonsils, supplied by the facial nerve[WP]" [PMID:16313389, Wikipedia:Pharyngeal_pouch_(embryology)#Second_pouch] | ||
|xref=AAO:0011115;;EFO:0003633;;EHDAA2:0000061;;EMAPA:16275;;ncithesaurus:Second_Pharyngeal_Pouch;;RETIRED_EHDAA2:0000060;;SCTID:345349000;;VHOG:0000967;;XAO:0000247;;ZFA:0001130 | |xref=AAO:0011115;;EFO:0003633;;EHDAA2:0000061;;EMAPA:16275;;ncithesaurus:Second_Pharyngeal_Pouch;;RETIRED_EHDAA2:0000060;;SCTID:345349000;;TAO:0001130;;VHOG:0000967;;XAO:0000247;;ZFA:0001130 | ||
|is_a=UBERON:0004117 | |is_a=UBERON:0004117 | ||
|synonym="2nd arch branchial pouch" EXACT [RETIRED_EHDAA2:0000060];;"2nd arch branchial pouch endoderm" EXACT [EHDAA2:0000061];;"pharyngeal pouches 2" EXACT PLURAL [ZFA:0001130];;"second arch pharyngeal pouch" EXACT [OBOL:automatic];;"second visceral pouch" EXACT [XAO:0000247];;"visceral pouch 2" EXACT [XAO:0000247] | |synonym="2nd arch branchial pouch" EXACT [RETIRED_EHDAA2:0000060];;"2nd arch branchial pouch endoderm" EXACT [EHDAA2:0000061];;"pharyngeal pouches 2" EXACT PLURAL [ZFA:0001130];;"second arch pharyngeal pouch" EXACT [OBOL:automatic];;"second visceral pouch" EXACT [XAO:0000247];;"visceral pouch 2" EXACT [XAO:0000247] | ||
Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset=vertebrate_core | |subset=vertebrate_core | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
Line 20: | Line 19: | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Second of the pharyngeal (endodermal) evaginations between the visceral arches from which the Eustachian tube is derived; pouches 2-4 open as gill slits.[AAO]" xsd:string | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} |
Revision as of 17:07, 26 June 2012
Name: | pharyngeal pouch 2 | |
---|---|---|
Definition: | "The second pouch between the second and third arches. Contributes to the middle ear, epithelial lining of Crypts (spaces) of the palatine tonsils, supplied by the facial nerve[WP]" [PMID:16313389, Wikipedia:Pharyngeal_pouch_(embryology)#Second_pouch] | |
Xrefs: |
| |
Synonyms: |
"2nd arch branchial pouch" EXACT [RETIRED_EHDAA2:0000060] "2nd arch branchial pouch endoderm" EXACT [EHDAA2:0000061] "pharyngeal pouches 2" EXACT PLURAL [ZFA:0001130] "second arch pharyngeal pouch" EXACT [OBOL:automatic] "second visceral pouch" EXACT [XAO:0000247] "visceral pouch 2" EXACT [XAO:0000247] | |
Alt_id: | UBERON:0005715 | |
Subset: | vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0004117(pharyngeal pouch) |
---|
Children
develops from: | UBERON:0003091 (thyroid primordium) |
---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007123 (pharyngeal pouch 2), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
Property "Property value" (as page type) with input value "UBPROP:0000001 "Second of the pharyngeal (endodermal) evaginations between the visceral arches from which the Eustachian tube is derived; pouches 2-4 open as gill slits.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.