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UBERON:0007123: Difference between revisions

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|namespace=
|namespace=
|def="The second pouch between the second and third arches. Contributes to the middle ear, epithelial lining of Crypts (spaces) of the palatine tonsils, supplied by the facial nerve[WP]" [PMID:16313389, Wikipedia:Pharyngeal_pouch_(embryology)#Second_pouch]
|def="The second pouch between the second and third arches. Contributes to the middle ear, epithelial lining of Crypts (spaces) of the palatine tonsils, supplied by the facial nerve[WP]" [PMID:16313389, Wikipedia:Pharyngeal_pouch_(embryology)#Second_pouch]
|xref=AAO:0011115;;EFO:0003633;;EHDAA2:0000061;;EMAPA:16275;;ncithesaurus:Second_Pharyngeal_Pouch;;RETIRED_EHDAA2:0000060;;SCTID:345349000;;VHOG:0000967;;XAO:0000247;;ZFA:0001130
|xref=AAO:0011115;;EFO:0003633;;EHDAA2:0000061;;EMAPA:16275;;ncithesaurus:Second_Pharyngeal_Pouch;;RETIRED_EHDAA2:0000060;;SCTID:345349000;;TAO:0001130;;VHOG:0000967;;XAO:0000247;;ZFA:0001130
|is_a=UBERON:0004117
|is_a=UBERON:0004117
|synonym="2nd arch branchial pouch" EXACT [RETIRED_EHDAA2:0000060];;"2nd arch branchial pouch endoderm" EXACT [EHDAA2:0000061];;"pharyngeal pouches 2" EXACT PLURAL [ZFA:0001130];;"second arch pharyngeal pouch" EXACT [OBOL:automatic];;"second visceral pouch" EXACT [XAO:0000247];;"visceral pouch 2" EXACT [XAO:0000247]
|synonym="2nd arch branchial pouch" EXACT [RETIRED_EHDAA2:0000060];;"2nd arch branchial pouch endoderm" EXACT [EHDAA2:0000061];;"pharyngeal pouches 2" EXACT PLURAL [ZFA:0001130];;"second arch pharyngeal pouch" EXACT [OBOL:automatic];;"second visceral pouch" EXACT [XAO:0000247];;"visceral pouch 2" EXACT [XAO:0000247]
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|obo_creation_date=
|obo_creation_date=
|subset=vertebrate_core
|subset=vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
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|located_in=
|located_in=
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Second of the pharyngeal (endodermal) evaginations between the visceral arches from which the Eustachian tube is derived; pouches 2-4 open as gill slits.[AAO]" xsd:string
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 17:07, 26 June 2012

Name:pharyngeal pouch 2
Definition:"The second pouch between the second and third arches. Contributes to the middle ear, epithelial lining of Crypts (spaces) of the palatine tonsils, supplied by the facial nerve[WP]" [PMID:16313389, Wikipedia:Pharyngeal_pouch_(embryology)#Second_pouch]
Xrefs:
links:

AAO:0011115
EFO:0003633
EHDAA2:0000061
EMAPA:16275
ncithesaurus:Second_Pharyngeal_Pouch
RETIRED_EHDAA2:0000060
SCTID:345349000
TAO:0001130
VHOG:0000967
XAO:0000247

ZFA:0001130
Synonyms: "2nd arch branchial pouch" EXACT [RETIRED_EHDAA2:0000060]
"2nd arch branchial pouch endoderm" EXACT [EHDAA2:0000061]
"pharyngeal pouches 2" EXACT PLURAL [ZFA:0001130]
"second arch pharyngeal pouch" EXACT [OBOL:automatic]
"second visceral pouch" EXACT [XAO:0000247]
"visceral pouch 2" EXACT [XAO:0000247]
Alt_id: UBERON:0005715
Subset: vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0004117(pharyngeal pouch)



Children

develops from:UBERON:0003091 (thyroid primordium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007123 (pharyngeal pouch 2), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data











Property "Property value" (as page type) with input value "UBPROP:0000001 "Second of the pharyngeal (endodermal) evaginations between the visceral arches from which the Eustachian tube is derived; pouches 2-4 open as gill slits.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.