CL:0000737: Difference between revisions
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Revision as of 17:26, 26 June 2012
Name: | striated muscle cell | |
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Namespace: | cell | |
Definition: | "Muscle cell which has as its direct parts myofilaments organized into sarcomeres." [GOC:tfm, ISBN:0721662544] | |
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Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | CL:0000187(muscle cell) |
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Children
is a: | CL:0000746 (cardiac muscle cell),CL:0002372 (myotube) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11525-119I4 (Cardiac Myocyte, donor1)
- 11605-120I3 (Cardiac Myocyte, donor2)
- 11634-122C5 (Mouse Cardiac Myocytes, donor3)
- 11686-122I3 (Cardiac Myocyte, donor3)
- 11711-123C1 (Mouse Cardiac Myocytes, donor1)
- 11729-123E1 (Mouse Cardiac Myocytes, donor2)
- 13469-144I4 (Myoblast differentiation to myotubes)
- 13470-144I5 (Myoblast differentiation to myotubes)
- 13471-144I6 (Myoblast differentiation to myotubes)
- 13472-144I7 (Myoblast differentiation to myotubes)
... further results Mouse (Mus musculus)
- 11525-119I4 (Cardiac Myocyte, donor1)
- 11605-120I3 (Cardiac Myocyte, donor2)
- 11634-122C5 (Mouse Cardiac Myocytes, donor3)
- 11686-122I3 (Cardiac Myocyte, donor3)
- 11711-123C1 (Mouse Cardiac Myocytes, donor1)
- 11729-123E1 (Mouse Cardiac Myocytes, donor2)
- 13469-144I4 (Myoblast differentiation to myotubes)
- 13470-144I5 (Myoblast differentiation to myotubes)
- 13471-144I6 (Myoblast differentiation to myotubes)
- 13472-144I7 (Myoblast differentiation to myotubes)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000737 (striated muscle cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data