CL:0002252: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 14: | Line 14: | ||
|obo_creation_date=2010-09-08T09:28:20Z | |obo_creation_date=2010-09-08T09:28:20Z | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 17:27, 26 June 2012
| Name: | epithelial cell of esophagus | ||
|---|---|---|---|
| Namespace: | cell | ||
| Definition: | "An epithelial cell of the esophagus." [GOC:tfm] | ||
| Xrefs: |
| ||
| Alt_id: | CL:1000402 | ||
| Created by: | tmeehan | ||
| Creation date: | 2010-09-08T09:28:20Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0002251(epithelial cell of alimentary canal) |
|---|
Children
| is a: | FF:0102428 (esophageal squamous cell carcinoma cell line) |
|---|---|
| derives from: | FF:0000056 (human epithelial cell of esophagus sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10658-109C1
- 10660-109C3
- 10661-109C4
- 10665-109C8
- 11507-119G4 (Esophageal Epithelial Cells, donor1)
- 11587-120G3 (Esophageal Epithelial Cells, donor2)
- 11668-122G3 (Esophageal Epithelial Cells, donor3)
Mouse (Mus musculus)
- 10658-109C1
- 10660-109C3
- 10661-109C4
- 10665-109C8
- 11507-119G4 (Esophageal Epithelial Cells, donor1)
- 11587-120G3 (Esophageal Epithelial Cells, donor2)
- 11668-122G3 (Esophageal Epithelial Cells, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002252 (epithelial cell of esophagus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 4.66e-66 | FFCP PHASE1:Hg19::chr6:47253676..47253680,-#_6ab85d284b629f219308a4aca6976452 | p22@TNFRSF21 |
| 4.66e-66 | FFCP PHASE2:Hg19::chr6:47253676..47253680,-#_6ab85d284b629f219308a4aca6976452 | p22@TNFRSF21 |
| 9.91e-41 | FFCP PHASE1:Hg19::chr10:105495838..105495848,-#_596c47749c57003882098ef627b76ff9 | p@chr10:105495838..105495848, - |
| 9.91e-41 | FFCP PHASE2:Hg19::chr10:105495838..105495848,-#_596c47749c57003882098ef627b76ff9 | p@chr10:105495838..105495848, - |
| 3.3e-40 | FFCP PHASE1:Hg19::chr17:39767356..39767365,+#_2b4b865a656f2c1d4e1e18af0c7745b6 | p@chr17:39767356..39767365, + |
| 3.3e-40 | FFCP PHASE2:Hg19::chr17:39767356..39767365,+#_2b4b865a656f2c1d4e1e18af0c7745b6 | p@chr17:39767356..39767365, + |
| 5.05e-34 | FFCP PHASE1:Hg19::chrX:102977640..102977644,-#_f9d3a811a2de138f36af1250080999e4 | p@chrX:102977640..102977644, - |
| 5.05e-34 | FFCP PHASE2:Hg19::chrX:102977640..102977644,-#_f9d3a811a2de138f36af1250080999e4 | p@chrX:102977640..102977644, - |
| 7.06e-34 | FFCP PHASE1:Hg19::chr20:43726572..43726588,+#_e0f8743d21fa0c91cd3f3d6cb4c9489e | p@chr20:43726572..43726588, + |
| 7.06e-34 | FFCP PHASE2:Hg19::chr20:43726572..43726588,+#_e0f8743d21fa0c91cd3f3d6cb4c9489e | p@chr20:43726572..43726588, + |
| 9.99e-30 | FFCP PHASE2:Hg19::chr2:227008823..227008831,-#_84a08882cc6a08184f54ba990bb1b87e | p@chr2:227008823..227008831, - |
| 9.99e-30 | FFCP PHASE1:Hg19::chr2:227008823..227008831,-#_84a08882cc6a08184f54ba990bb1b87e | p@chr2:227008823..227008831, - |
| 1.33e-29 | FFCP PHASE1:Hg19::chr17:71333971..71333975,-#_fa168ec4d64ad59f624b5c7b0f45ac72 | p@chr17:71333971..71333975, - |
| 1.33e-29 | FFCP PHASE2:Hg19::chr17:71333971..71333975,-#_fa168ec4d64ad59f624b5c7b0f45ac72 | p@chr17:71333971..71333975, - |
| 2.37e-29 | FFCP PHASE1:Hg19::chr1:19403546..19403571,-#_ac5f42133bb031cdfc4fdd2744c98108 | p@chr1:19403546..19403571, - |
| 2.37e-29 | FFCP PHASE2:Hg19::chr1:19403546..19403571,-#_ac5f42133bb031cdfc4fdd2744c98108 | p@chr1:19403546..19403571, - |
| 3.16e-29 | FFCP PHASE1:Hg19::chr5:1882170..1882182,-#_8ca36f99a8146af7d001dad9f9ede3c4 | p3@IRX4 |
| 3.16e-29 | FFCP PHASE2:Hg19::chr5:1882170..1882182,-#_8ca36f99a8146af7d001dad9f9ede3c4 | p3@IRX4 |
| 4.61e-26 | FFCP PHASE2:Hg19::chr11:8795787..8795804,-#_8179529af0a64376f95934de111e6657 | p26@ST5 |
| 4.61e-26 | FFCP PHASE1:Hg19::chr11:8795787..8795804,-#_8179529af0a64376f95934de111e6657 | p26@ST5 |
| 5.93e-26 | FFCP PHASE1:Hg19::chr17:18907460..18907461,-#_ceaaeb25ce8fe858b4fc0a18f70deba3 | p12@FAM83G |
| 5.93e-26 | FFCP PHASE2:Hg19::chr17:18907460..18907461,-#_ceaaeb25ce8fe858b4fc0a18f70deba3 | p12@FAM83G |
| 5.93e-26 | FFCP PHASE1:Hg19::chr1:153533849..153533860,-#_ceaaeb25ce8fe858b4fc0a18f70deba3 | p@chr1:153533849..153533860, - |
| 5.93e-26 | FFCP PHASE2:Hg19::chr1:153533849..153533860,-#_ceaaeb25ce8fe858b4fc0a18f70deba3 | p@chr1:153533849..153533860, - |
| 5.93e-26 | FFCP PHASE1:Hg19::chr16:87865427..87865438,-#_ceaaeb25ce8fe858b4fc0a18f70deba3 | p28@SLC7A5 |
| 5.93e-26 | FFCP PHASE2:Hg19::chr16:87865427..87865438,-#_ceaaeb25ce8fe858b4fc0a18f70deba3 | p28@SLC7A5 |
| 2.1e-23 | FFCP PHASE1:Hg19::chr3:38017384..38017388,+#_02027fcec379a1d659ab4dac18469601 | p@chr3:38017384..38017388, + |
| 2.1e-23 | FFCP PHASE2:Hg19::chr3:38017384..38017388,+#_02027fcec379a1d659ab4dac18469601 | p@chr3:38017384..38017388, + |
| 3.28e-23 | FFCP PHASE2:Hg19::chr12:52884676..52884706,-#_31ad00f6c68c5b210b0430edf21dbb9a | p13@KRT6A |
| 3.28e-23 | FFCP PHASE1:Hg19::chr17:73737085..73737088,+#_31ad00f6c68c5b210b0430edf21dbb9a | p@chr17:73737085..73737088, + |
| 3.28e-23 | FFCP PHASE2:Hg19::chr17:73737085..73737088,+#_31ad00f6c68c5b210b0430edf21dbb9a | p@chr17:73737085..73737088, + |
| 3.28e-23 | FFCP PHASE1:Hg19::chr5:150970911..150970920,-#_31ad00f6c68c5b210b0430edf21dbb9a | p3@FAT2 |
| 3.28e-23 | FFCP PHASE2:Hg19::chr5:150970911..150970920,-#_31ad00f6c68c5b210b0430edf21dbb9a | p3@FAT2 |
| 3.28e-23 | FFCP PHASE1:Hg19::chr12:52884676..52884706,-#_31ad00f6c68c5b210b0430edf21dbb9a | p13@KRT6A |
| 5.13e-23 | FFCP PHASE2:Hg19::chr13:61507880..61507904,-#_a392ad1fcef8444e613e087c13566585 | p@chr13:61507880..61507904, - |
| 5.13e-23 | FFCP PHASE1:Hg19::chr13:61507880..61507904,-#_a392ad1fcef8444e613e087c13566585 | p@chr13:61507880..61507904, - |
| 2.82e-21 | FFCP PHASE2:Hg19::chr7:158196067..158196075,-#_f6725b4d563d566b4078dbde03707756 | p@chr7:158196067..158196075, - |
| 2.82e-21 | FFCP PHASE1:Hg19::chr17:38632125..38632156,-#_f6725b4d563d566b4078dbde03707756 | p@chr17:38632125..38632156, - |
| 2.82e-21 | FFCP PHASE2:Hg19::chr17:38632125..38632156,-#_f6725b4d563d566b4078dbde03707756 | p@chr17:38632125..38632156, - |
| 2.82e-21 | FFCP PHASE1:Hg19::chr7:158196067..158196075,-#_f6725b4d563d566b4078dbde03707756 | p@chr7:158196067..158196075, - |
| 4.22e-21 | FFCP PHASE2:Hg19::chr16:2030183..2030227,-#_a62ae2afdc64125fc90d34c7fc62db5c | p@chr16:2030183..2030227, - |
| 4.22e-21 | FFCP PHASE1:Hg19::chr16:2030183..2030227,-#_a62ae2afdc64125fc90d34c7fc62db5c | p@chr16:2030183..2030227, - |
| 5.16e-21 | FFCP PHASE1:Hg19::chr9:131675060..131675070,+#_42cf115a9afb575fac5068a6ea566a54 | p40@LRRC8A |
| 5.16e-21 | FFCP PHASE2:Hg19::chr9:131675060..131675070,+#_42cf115a9afb575fac5068a6ea566a54 | p40@LRRC8A |
| 7.72e-21 | FFCP PHASE1:Hg19::chr16:70731529..70731532,-#_3adb40724f8672edcbe3dc77a9d2472e | p@chr16:70731529..70731532, - |
| 7.72e-21 | FFCP PHASE2:Hg19::chr16:70731529..70731532,-#_3adb40724f8672edcbe3dc77a9d2472e | p@chr16:70731529..70731532, - |
| 9.43e-21 | FFCP PHASE1:Hg19::chr17:79061332..79061350,+#_6400fa01a42369ed708e7c5378e45b80 | p@chr17:79061332..79061350, + |
| 9.43e-21 | FFCP PHASE2:Hg19::chr17:79061332..79061350,+#_6400fa01a42369ed708e7c5378e45b80 | p@chr17:79061332..79061350, + |
| 1.3e-19 | FFCP PHASE1:Hg19::chr6:44096519..44096530,-#_a5273d4799fb9cae0ecfe569200728ca | p@chr6:44096519..44096530, - |
| 1.3e-19 | FFCP PHASE2:Hg19::chr6:44096519..44096530,-#_a5273d4799fb9cae0ecfe569200728ca | p@chr6:44096519..44096530, - |
| 2.25e-19 | FFCP PHASE1:Hg19::chr17:39778698..39778748,-#_17f65a0cedd3394be7e38e6e5359cc21 | p@chr17:39778698..39778748, - |
| 2.25e-19 | FFCP PHASE2:Hg19::chr17:39778698..39778748,-#_17f65a0cedd3394be7e38e6e5359cc21 | p@chr17:39778698..39778748, - |
| 2.71e-19 | FFCP PHASE2:Hg19::chr14:23777630..23777642,-#_236937de9425d10e783ab5a690e2b071 | p@chr14:23777630..23777642, - |
| 2.71e-19 | FFCP PHASE1:Hg19::chr14:23777630..23777642,-#_236937de9425d10e783ab5a690e2b071 | p@chr14:23777630..23777642, - |
| 3.25e-19 | FFCP PHASE1:Hg19::chr16:57954525..57954533,-#_82824f43d8e853f749cc0db7d0c17230 | p@chr16:57954525..57954533, - |
| 3.25e-19 | FFCP PHASE2:Hg19::chr16:57954525..57954533,-#_82824f43d8e853f749cc0db7d0c17230 | p@chr16:57954525..57954533, - |
| 3.16e-18 | FFCP PHASE1:Hg19::chr19:13692483..13692485,-#_d0efe0440cb1ced4fd752092f075c7e8 | p@chr19:13692483..13692485, - |
| 3.16e-18 | FFCP PHASE2:Hg19::chr19:13692483..13692485,-#_d0efe0440cb1ced4fd752092f075c7e8 | p@chr19:13692483..13692485, - |
| 4.44e-18 | FFCP PHASE1:Hg19::chr4:6955908..6955919,+#_fed6ee05ac954389b07a47ef1d3ddd43 | p9@TBC1D14 |
| 4.44e-18 | FFCP PHASE2:Hg19::chr4:6955908..6955919,+#_fed6ee05ac954389b07a47ef1d3ddd43 | p9@TBC1D14 |
| 4.44e-18 | FFCP PHASE1:Hg19::chr16:66945145..66945152,-#_fed6ee05ac954389b07a47ef1d3ddd43 | p@chr16:66945145..66945152, - |
| 4.44e-18 | FFCP PHASE2:Hg19::chr16:66945145..66945152,-#_fed6ee05ac954389b07a47ef1d3ddd43 | p@chr16:66945145..66945152, - |
| 6.23e-18 | FFCP PHASE2:Hg19::chr12:28125953..28125964,-#_730f36d340e16bba1af876c0ea2b47d3 | p17@PTHLH |
| 6.23e-18 | FFCP PHASE2:Hg19::chr11:128812910..128812927,-#_730f36d340e16bba1af876c0ea2b47d3 | p2@TP53AIP1 |
| 6.23e-18 | FFCP PHASE1:Hg19::chr17:74582227..74582230,-#_730f36d340e16bba1af876c0ea2b47d3 | p10@ST6GALNAC2 |
| 6.23e-18 | FFCP PHASE2:Hg19::chr17:74582227..74582230,-#_730f36d340e16bba1af876c0ea2b47d3 | p10@ST6GALNAC2 |
| 6.23e-18 | FFCP PHASE1:Hg19::chr12:28125953..28125964,-#_730f36d340e16bba1af876c0ea2b47d3 | p17@PTHLH |
| 6.23e-18 | FFCP PHASE1:Hg19::chr11:128812910..128812927,-#_730f36d340e16bba1af876c0ea2b47d3 | p2@TP53AIP1 |
| 7.37e-18 | FFCP PHASE1:Hg19::chr3:126676298..126676310,+#_096ffe6beae0c05038515422db29246b | p@chr3:126676298..126676310, + |
| 7.37e-18 | FFCP PHASE2:Hg19::chr3:126676298..126676310,+#_096ffe6beae0c05038515422db29246b | p@chr3:126676298..126676310, + |
| 1.22e-17 | FFCP PHASE2:Hg19::chr17:38633789..38633809,+#_50315a39cc2015eabcb76afbfe60e2bb | p@chr17:38633789..38633809, + |
| 1.22e-17 | FFCP PHASE1:Hg19::chr17:38633789..38633809,+#_50315a39cc2015eabcb76afbfe60e2bb | p@chr17:38633789..38633809, + |
| 7.57e-17 | FFCP PHASE1:Hg19::chr11:72939150..72939161,+#_4026f447024edf516b5b4e5a7f8d5ab5 | p@chr11:72939150..72939161, + |
| 7.57e-17 | FFCP PHASE1:Hg19::chr21:38631055..38631068,-#_4026f447024edf516b5b4e5a7f8d5ab5 | p@chr21:38631055..38631068, - |
| 7.57e-17 | FFCP PHASE2:Hg19::chr21:38631055..38631068,-#_4026f447024edf516b5b4e5a7f8d5ab5 | p@chr21:38631055..38631068, - |
| 7.57e-17 | FFCP PHASE2:Hg19::chr11:72939150..72939161,+#_4026f447024edf516b5b4e5a7f8d5ab5 | p@chr11:72939150..72939161, + |
| 1.21e-16 | FFCP PHASE1:Hg19::chr1:236558370..236558376,+#_562cfa33bd5d44fcab564d0c52bf5f5e | p8@EDARADD |
| 1.21e-16 | FFCP PHASE1:Hg19::chr17:60782123..60782133,+#_562cfa33bd5d44fcab564d0c52bf5f5e | p@chr17:60782123..60782133, + |
| 1.21e-16 | FFCP PHASE2:Hg19::chr1:236558370..236558376,+#_562cfa33bd5d44fcab564d0c52bf5f5e | p8@EDARADD |
| 1.21e-16 | FFCP PHASE2:Hg19::chr17:60782123..60782133,+#_562cfa33bd5d44fcab564d0c52bf5f5e | p@chr17:60782123..60782133, + |
| 1.41e-16 | FFCP PHASE2:Hg19::chr12:52774351..52774355,+#_15dabd48d603e7cde11a8e30ddab4569 | p1@ENST00000547174 |
| 1.41e-16 | FFCP PHASE1:Hg19::chr12:116955659..116955671,+#_15dabd48d603e7cde11a8e30ddab4569 | p1@ENST00000552992 |
| 1.41e-16 | FFCP PHASE2:Hg19::chr12:116955659..116955671,+#_15dabd48d603e7cde11a8e30ddab4569 | p1@ENST00000552992 |
| 1.41e-16 | FFCP PHASE1:Hg19::chr12:52774351..52774355,+#_15dabd48d603e7cde11a8e30ddab4569 | p1@ENST00000547174 |
| 1.65e-16 | FFCP PHASE1:Hg19::chr12:52908434..52908443,-#_8fc8a9d591422716c6d377973b217389 | p@chr12:52908434..52908443, - |
| 1.65e-16 | FFCP PHASE2:Hg19::chr12:52908434..52908443,-#_8fc8a9d591422716c6d377973b217389 | p@chr12:52908434..52908443, - |
| 1.93e-16 | FFCP PHASE1:Hg19::chr2:231649545..231649550,-#_c92defd795284fa778ac635c3d6ee731 | p@chr2:231649545..231649550, - |
| 1.93e-16 | FFCP PHASE2:Hg19::chr2:231649545..231649550,-#_c92defd795284fa778ac635c3d6ee731 | p@chr2:231649545..231649550, - |
| 2.25e-16 | FFCP PHASE1:Hg19::chr17:80575169..80575172,-#_f77d8f6b59856f75f6c5f7dc03cfa46f | p@chr17:80575169..80575172, - |
| 2.25e-16 | FFCP PHASE2:Hg19::chr17:80575169..80575172,-#_f77d8f6b59856f75f6c5f7dc03cfa46f | p@chr17:80575169..80575172, - |
| 8.63e-16 | FFCP PHASE1:Hg19::chr17:74582066..74582075,-#_2ac95de73b4ef8a96a038f9834732358 | p9@ST6GALNAC2 |
| 8.63e-16 | FFCP PHASE2:Hg19::chr17:74582066..74582075,-#_2ac95de73b4ef8a96a038f9834732358 | p9@ST6GALNAC2 |
| 1.78e-15 | FFCP PHASE1:Hg19::chr21:44957855..44957891,-#_97e1eb08373931610f4f17adcce4c3d2 | p@chr21:44957855..44957891, - |
| 1.78e-15 | FFCP PHASE2:Hg19::chr21:44957855..44957891,-#_97e1eb08373931610f4f17adcce4c3d2 | p@chr21:44957855..44957891, - |
| 2.38e-15 | FFCP PHASE2:Hg19::chr22:46933762..46933780,+#_a3c9a5e84f23b0513d642573af46a8db | p@chr22:46933762..46933780, + |
| 2.38e-15 | FFCP PHASE1:Hg19::chr22:46933762..46933780,+#_a3c9a5e84f23b0513d642573af46a8db | p@chr22:46933762..46933780, + |
| 5.42e-15 | FFCP PHASE1:Hg19::chr12:52887237..52887248,-#_07a2be153fd5f5b809abda912fd0391b | p12@KRT6A |
| 5.42e-15 | FFCP PHASE2:Hg19::chr12:52887237..52887248,-#_07a2be153fd5f5b809abda912fd0391b | p12@KRT6A |
| 6.22e-15 | FFCP PHASE1:Hg19::chr4:3387240..3387255,+#_3d3b0b46db867bcd97be7c1acb04c245 | p13@RGS12 |
| 6.22e-15 | FFCP PHASE2:Hg19::chr4:3387240..3387255,+#_3d3b0b46db867bcd97be7c1acb04c245 | p13@RGS12 |
