CL:0000333: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 15: | Line 15: | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from=CL:0000133 | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
Revision as of 13:00, 27 June 2012
| Name: | neural crest cell | |
|---|---|---|
| Namespace: | cell;;efo | |
| Definition: | "A cell of the strip of specialized ectoderm flanking each side of the embryonal neural plate, which after the closure of the neural tube, forms a column of isolated cells along the dorsal aspect of the neural tube. Most of the cranial and all of the spinal sensory ganglion cells arise by differentiation of neural crest cells." [MESH:A.16.254.600] | |
| Xrefs: |
|
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000219(motile cell),CL:0002321(embryonic cell) |
|---|---|
| develops_from: | CL:0000133(neurectodermal cell) |
Children
| is a: | CL:0000008 (migratory cranial neural crest cell),CL:0000011 (migratory trunk neural crest cell),CL:0002607 (enteric neural crest cell) |
|---|---|
| derives from: | FF:0100932 (neuroblastoma cell line sample) |
| develops from: | CL:0000005 (fibroblast neural crest derived),CL:0000123 (neuron associated cell (sensu Vertebrata)),CL:0000166 (chromaffin cell),CL:0000346 (hair follicle dermal papilla cell),CL:0000541 (melanoblast),CL:0002375 (Schwann cell precursor),CL:0007010 (preosteoblast) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10458-106G8
- 10460-106H1
- 10461-106H2
- 10480-107A3
- 10507-107D3
- 10508-107D4 (neuroblastoma cell line:CHP-134)
- 10538-107G7
- 10539-107G8 (neuroblastoma cell line:NB-1)
- 10554-107I5
- 10555-107I6 (neuroblastoma cell line:NH-12)
... further results Mouse (Mus musculus)
- 10458-106G8
- 10460-106H1
- 10461-106H2
- 10480-107A3
- 10507-107D3
- 10508-107D4 (neuroblastoma cell line:CHP-134)
- 10538-107G7
- 10539-107G8 (neuroblastoma cell line:NB-1)
- 10554-107I5
- 10555-107I6 (neuroblastoma cell line:NH-12)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000333 (neural crest cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
