CL:0000791: Difference between revisions

Revision as of 13:02, 27 June 2012

Name:	mature alpha-beta T cell
Namespace:	cell;;efo
Definition:	"A alpha-beta T cell that has a mature phenotype." [GOC:add, GOC:tfm, ISBN:0781735149]
Synonyms:	"mature alpha-beta T lymphocyte" EXACT [] "mature alpha-beta T-cell" EXACT [] "mature alpha-beta T-lymphocyte" EXACT []

Ontology association Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies. link to ontology dataset data

Parents

is_a:	CL:0000789(alpha-beta T cell),CL:0002419(mature T cell)
develops_from:	CL:0000790(immature alpha-beta T cell)

Children

is a:	CL:0000624 (CD4-positive, alpha-beta T cell),CL:0000625 (CD8-positive, alpha-beta T cell),CL:0000814 (mature NK T cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

10768-110F3
10777-110G3 (NK T cell leukemia cell line:KHYG-1)
11225-116C1 (CD4+ T Cells, donor1)
11226-116C2 (CD8+ T Cells, donor1)
11306-117C1 (CD4+ T Cells, donor2)
11307-117C2 (CD8+ T Cells, donor2)
11382-118B5 (CD4+ T Cells, donor3)
11383-118B6 (CD8+ T Cells, donor3)
11780-124A7 (CD4+CD25+CD45RA+ naive regulatory T cells, donor1)
11782-124A9 (CD4+CD25+CD45RA- memory regulatory T cells, donor1)

... further results Mouse (Mus musculus)

10768-110F3
10777-110G3 (NK T cell leukemia cell line:KHYG-1)
11225-116C1 (CD4+ T Cells, donor1)
11226-116C2 (CD8+ T Cells, donor1)
11306-117C1 (CD4+ T Cells, donor2)
11307-117C2 (CD8+ T Cells, donor2)
11382-118B5 (CD4+ T Cells, donor3)
11383-118B6 (CD8+ T Cells, donor3)
11780-124A7 (CD4+CD25+CD45RA+ naive regulatory T cells, donor1)
11782-124A9 (CD4+CD25+CD45RA- memory regulatory T cells, donor1)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000791 (mature alpha-beta T cell), sorted by p-values Analyst: Hideya Kawaji link to source dataset human : data mouse : data

Search:

P-value	FFCP	Short description
4.82e-125	FFCP PHASE1:Hg19::chr5:35859622..35859626,+	p@chr5:35859622..35859626, +
4.82e-125	FFCP PHASE2:Hg19::chr5:35859622..35859626,+	p@chr5:35859622..35859626, +
2.55e-96	FFCP PHASE2:Hg19::chr15:89179440..89179457,-	p@chr15:89179440..89179457, -
2.55e-96	FFCP PHASE1:Hg19::chr15:89179440..89179457,-	p@chr15:89179440..89179457, -
1.42e-94	FFCP PHASE1:Hg19::chr5:35854487..35854499,-	p@chr5:35854487..35854499, -
1.42e-94	FFCP PHASE2:Hg19::chr5:35854487..35854499,-	p@chr5:35854487..35854499, -
1.09e-92	FFCP PHASE1:Hg19::chr5:35854779..35854826,+	p@chr5:35854779..35854826, +
1.09e-92	FFCP PHASE2:Hg19::chr5:35854779..35854826,+	p@chr5:35854779..35854826, +
4.33e-92	FFCP PHASE2:Hg19::chr4:103551892..103551903,-	p@chr4:103551892..103551903, -
4.33e-92	FFCP PHASE1:Hg19::chr4:103551892..103551903,-	p@chr4:103551892..103551903, -
1.97e-90	FFCP PHASE1:Hg19::chr5:35856882..35856909,-	p@chr5:35856882..35856909, -
1.97e-90	FFCP PHASE2:Hg19::chr5:35856882..35856909,-	p@chr5:35856882..35856909, -
2.93e-90	FFCP PHASE2:Hg19::chr18:68318174..68318193,-	p1@GTSCR1
2.93e-90	FFCP PHASE1:Hg19::chr18:68318174..68318193,-	p1@GTSCR1
5.78e-88	FFCP PHASE1:Hg19::chr7:97880779..97880793,+	p@chr7:97880779..97880793, +
5.78e-88	FFCP PHASE2:Hg19::chr7:97880779..97880793,+	p@chr7:97880779..97880793, +
8.73e-88	FFCP PHASE1:Hg19::chr1:25255894..25255906,+	p@chr1:25255894..25255906, +
8.73e-88	FFCP PHASE2:Hg19::chr1:25255894..25255906,+	p@chr1:25255894..25255906, +
4.59e-87	FFCP PHASE2:Hg19::chr2:38830433..38830444,-	p10@HNRPLL
4.59e-87	FFCP PHASE1:Hg19::chr2:38830433..38830444,-	p10@HNRPLL
1.31e-86	FFCP PHASE1:Mm9::chr14:54831123..54831141,+	p1@ENSMUST00000103733
1.31e-86	FFCP PHASE1:Mm9::chr4:151490126..151490137,+	p3@Tnfrsf25
1.31e-86	FFCP PHASE1:Mm9::chr4:32339511..32339518,+	p@chr4:32339511..32339518, +
1.31e-86	FFCP PHASE2:Mm9::chr14:54150421..54150439,+	p1@uc007tsm.1
1.31e-86	FFCP PHASE2:Mm9::chr6:48637679..48637692,+	p@chr6:48637679..48637692, +
1.31e-86	FFCP PHASE2:Mm9::chr19:10869146..10869168,-	p@chr19:10869146..10869168, -
1.31e-86	FFCP PHASE1:Mm9::chr14:54150421..54150439,+	p1@uc007tsm.1
1.31e-86	FFCP PHASE1:Mm9::chr11:99015330..99015341,-	p@chr11:99015330..99015341, -
1.31e-86	FFCP PHASE1:Mm9::chr19:10869146..10869168,-	p@chr19:10869146..10869168, -
1.31e-86	FFCP PHASE2:Mm9::chr4:32339511..32339518,+	p@chr4:32339511..32339518, +
1.31e-86	FFCP PHASE2:Mm9::chr11:99015330..99015341,-	p@chr11:99015330..99015341, -
1.31e-86	FFCP PHASE2:Mm9::chr14:54831123..54831141,+	p1@ENSMUST00000103733
1.31e-86	FFCP PHASE1:Mm9::chr6:48637679..48637692,+	p@chr6:48637679..48637692, +
1.31e-86	FFCP PHASE2:Mm9::chr4:151490126..151490137,+	p3@Tnfrsf25
2.98e-86	FFCP PHASE2:Hg19::chr10:14611822..14611844,-	p@chr10:14611822..14611844, -
2.98e-86	FFCP PHASE1:Hg19::chr10:14611822..14611844,-	p@chr10:14611822..14611844, -
3.57e-86	FFCP PHASE2:Hg19::chr4:90205082..90205093,+	p@chr4:90205082..90205093, +
3.57e-86	FFCP PHASE1:Hg19::chr4:90205082..90205093,+	p@chr4:90205082..90205093, +
9.89e-85	FFCP PHASE1:Hg19::chr16:57162957..57162973,+	p@chr16:57162957..57162973, +
9.89e-85	FFCP PHASE2:Hg19::chr16:57162957..57162973,+	p@chr16:57162957..57162973, +
1.01e-83	FFCP PHASE1:Hg19::chr2:87053288..87053295,-	p@chr2:87053288..87053295, -
1.01e-83	FFCP PHASE2:Hg19::chr2:87053288..87053295,-	p@chr2:87053288..87053295, -
1.1e-83	FFCP PHASE2:Hg19::chr6:128299606..128299618,+	p@chr6:128299606..128299618, +
1.1e-83	FFCP PHASE2:Hg19::chr11:122709344..122709378,+	p@chr11:122709344..122709378, +
1.1e-83	FFCP PHASE1:Hg19::chr11:122709344..122709378,+	p@chr11:122709344..122709378, +
1.1e-83	FFCP PHASE1:Hg19::chr6:128299606..128299618,+	p@chr6:128299606..128299618, +
1.69e-83	FFCP PHASE1:Hg19::chr5:35780579..35780585,+	p@chr5:35780579..35780585, +
1.69e-83	FFCP PHASE2:Hg19::chr5:35780579..35780585,+	p@chr5:35780579..35780585, +
1.02e-82	FFCP PHASE1:Hg19::chr5:35859218..35859252,-	p@chr5:35859218..35859252, -
1.02e-82	FFCP PHASE2:Hg19::chr5:35859218..35859252,-	p@chr5:35859218..35859252, -
1.33e-82	FFCP PHASE2:Hg19::chr12:49375076..49375089,-	p@chr12:49375076..49375089, -
1.33e-82	FFCP PHASE1:Hg19::chr12:49375076..49375089,-	p@chr12:49375076..49375089, -
3.02e-82	FFCP PHASE2:Hg19::chr10:9060907..9060927,-	p@chr10:9060907..9060927, -
3.02e-82	FFCP PHASE1:Hg19::chr10:9060907..9060927,-	p@chr10:9060907..9060927, -
4.05e-82	FFCP PHASE2:Hg19::chr12:10561626..10561641,-	p@chr12:10561626..10561641, -
4.05e-82	FFCP PHASE1:Hg19::chr12:10561626..10561641,-	p@chr12:10561626..10561641, -
4.31e-82	FFCP PHASE2:Hg19::chr7:150178764..150178778,-	p@chr7:150178764..150178778, -
4.31e-82	FFCP PHASE1:Hg19::chr7:150178764..150178778,-	p@chr7:150178764..150178778, -
5.81e-82	FFCP PHASE2:Hg19::chr2:182038499..182038509,+	p@chr2:182038499..182038509, +
5.81e-82	FFCP PHASE1:Hg19::chr2:182038499..182038509,+	p@chr2:182038499..182038509, +
1.02e-81	FFCP PHASE2:Hg19::chr4:4271366..4271377,-	p@chr4:4271366..4271377, -
1.02e-81	FFCP PHASE1:Hg19::chr4:4271366..4271377,-	p@chr4:4271366..4271377, -
8.22e-81	FFCP PHASE2:Hg19::chr11:108094238..108094253,+	p10@ATM
8.22e-81	FFCP PHASE1:Hg19::chr11:108094238..108094253,+	p10@ATM
2.22e-80	FFCP PHASE2:Hg19::chr12:12867774..12867787,-	p@chr12:12867774..12867787, -
2.22e-80	FFCP PHASE1:Hg19::chr12:12867774..12867787,-	p@chr12:12867774..12867787, -
8.6e-79	FFCP PHASE1:Hg19::chr5:67571114..67571129,-	p@chr5:67571114..67571129, -
8.6e-79	FFCP PHASE2:Hg19::chr5:67571114..67571129,-	p@chr5:67571114..67571129, -
2.3e-78	FFCP PHASE1:Mm9::chr14:54811976..54811990,+	p1@ENSMUST00000103714
2.3e-78	FFCP PHASE2:Mm9::chr14:54811976..54811990,+	p1@ENSMUST00000103714
2.3e-78	FFCP PHASE1:Mm9::chr5:123440486..123440504,-	p@chr5:123440486..123440504, -
2.3e-78	FFCP PHASE2:Mm9::chr12:74704873..74704900,+	p@chr12:74704873..74704900, +
2.3e-78	FFCP PHASE1:Mm9::chr14:56207154..56207165,-	p@chr14:56207154..56207165, -
2.3e-78	FFCP PHASE2:Mm9::chr14:56207154..56207165,-	p@chr14:56207154..56207165, -
2.3e-78	FFCP PHASE2:Mm9::chr5:123440486..123440504,-	p@chr5:123440486..123440504, -
2.3e-78	FFCP PHASE2:Mm9::chr7:31935025..31935037,+	p@chr7:31935025..31935037, +
2.3e-78	FFCP PHASE1:Mm9::chr8:84082784..84082795,+	p@chr8:84082784..84082795, +
2.3e-78	FFCP PHASE1:Mm9::chr7:31935025..31935037,+	p@chr7:31935025..31935037, +
2.3e-78	FFCP PHASE1:Mm9::chr12:74704873..74704900,+	p@chr12:74704873..74704900, +
2.3e-78	FFCP PHASE2:Mm9::chr8:84082784..84082795,+	p@chr8:84082784..84082795, +
2.56e-78	FFCP PHASE1:Hg19::chr6:143228788..143228799,-	p@chr6:143228788..143228799, -
2.56e-78	FFCP PHASE2:Hg19::chr6:143228788..143228799,-	p@chr6:143228788..143228799, -
2.82e-78	FFCP PHASE1:Mm9::chr5:123440767..123440778,+	p@chr5:123440767..123440778, +
2.82e-78	FFCP PHASE1:Mm9::chr4:32422919..32422935,+	p@chr4:32422919..32422935, +
2.82e-78	FFCP PHASE2:Mm9::chr14:54838649..54838660,+	p@chr14:54838649..54838660, +
2.82e-78	FFCP PHASE1:Mm9::chr14:54838649..54838660,+	p@chr14:54838649..54838660, +
2.82e-78	FFCP PHASE2:Mm9::chr4:32422919..32422935,+	p@chr4:32422919..32422935, +
2.82e-78	FFCP PHASE2:Mm9::chr5:123440767..123440778,+	p@chr5:123440767..123440778, +
3.46e-78	FFCP PHASE1:Mm9::chr15:27786221..27786240,-	p@chr15:27786221..27786240, -
3.46e-78	FFCP PHASE2:Mm9::chr15:27786221..27786240,-	p@chr15:27786221..27786240, -
4.25e-78	FFCP PHASE2:Mm9::chr6:99215016..99215036,+	p@chr6:99215016..99215036, +
4.25e-78	FFCP PHASE1:Mm9::chr3:103672068..103672090,-	p@chr3:103672068..103672090, -
4.25e-78	FFCP PHASE1:Mm9::chr6:99215016..99215036,+	p@chr6:99215016..99215036, +
4.25e-78	FFCP PHASE2:Mm9::chr3:103672068..103672090,-	p@chr3:103672068..103672090, -
5.22e-78	FFCP PHASE2:Mm9::chr6:48634453..48634468,-	p@chr6:48634453..48634468, -
5.22e-78	FFCP PHASE1:Mm9::chr6:48634453..48634468,-	p@chr6:48634453..48634468, -
6.45e-78	FFCP PHASE1:Hg19::chr7:36816941..36816949,+	p@chr7:36816941..36816949, +
6.45e-78	FFCP PHASE2:Hg19::chr7:36816941..36816949,+	p@chr7:36816941..36816949, +
7.86e-78	FFCP PHASE1:Mm9::chr15:60018823..60018838,-	p5@uc007vxz.1
7.86e-78	FFCP PHASE2:Mm9::chr15:60018823..60018838,-	p5@uc007vxz.1

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 |subset=
 |derives_from=
-|develops_from=
+|develops_from=CL:0000790
 |has_quality=
 |located_in=

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Revision as of 13:02, 27 June 2012

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