CL:0000826: Difference between revisions
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|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from=CL:0000051 | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
Revision as of 13:02, 27 June 2012
| Name: | pro-B cell | ||
|---|---|---|---|
| Namespace: | cell;;efo | ||
| Definition: | "A progenitor cell of the B cell lineage, with some lineage specific activity such as early stages of recombination of B cell receptor genes, but not yet fully committed to the B cell lineage until the expression of PAX5 occurs." [GOC:add, ISBN:0781735149, PMID:12633665] | ||
| Xrefs: |
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| Synonyms: |
"pre-B cell (Philadelphia nomenclature)" RELATED [PMID:11244048] "pre-pro B cell" BROAD [PMID:17582343] "pro-B lymphocyte" EXACT [] "pro-B-cell" EXACT [] "pro-B-lymphocyte" EXACT [] "progenitor B cell" EXACT [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000838(lymphoid lineage restricted progenitor cell) |
|---|---|
| develops_from: | CL:0000051(common lymphoid progenitor) |
Children
| disjoint from: | CL:0000817 (precursor B cell) |
|---|---|
| develops from: | CL:0000236 (B cell),CL:0000945 (lymphocyte of B lineage),CL:0000955 (pre-B-II cell) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000826 (pro-B cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 6.92e-147 | FFCP PHASE2:Hg19::chr11:111224819..111224845,+#_d06da43391ca56adb936d93ceac8db1e | p2@CU689419 |
| 6.92e-147 | FFCP PHASE1:Hg19::chr11:111224819..111224845,+#_d06da43391ca56adb936d93ceac8db1e | p2@CU689419 |
| 6.67e-144 | FFCP PHASE1:Hg19::chr5:132439186..132439209,+#_5bb408a7862a6984d509e7dd9c70b6af | p13@HSPA4 |
| 6.67e-144 | FFCP PHASE2:Hg19::chr5:132439186..132439209,+#_5bb408a7862a6984d509e7dd9c70b6af | p13@HSPA4 |
| 3.04e-141 | FFCP PHASE2:Hg19::chr3:121797478..121797512,-#_04e69eeb4599841ddea105996672c686 | p@chr3:121797478..121797512, - |
| 3.04e-141 | FFCP PHASE1:Hg19::chr3:121797478..121797512,-#_04e69eeb4599841ddea105996672c686 | p@chr3:121797478..121797512, - |
| 1.84e-138 | FFCP PHASE1:Hg19::chr19:7766976..7766982,-#_e3a2af9c3cbe6a5a052f9cf368af5f2a | p9@FCER2 |
| 1.84e-138 | FFCP PHASE2:Hg19::chr19:7766976..7766982,-#_e3a2af9c3cbe6a5a052f9cf368af5f2a | p9@FCER2 |
| 1.52e-135 | FFCP PHASE2:Hg19::chr9:37037005..37037011,+#_37ee5e7460a3c16c1ba96e3ea381f265 | p@chr9:37037005..37037011, + |
| 1.52e-135 | FFCP PHASE1:Hg19::chr9:37037005..37037011,+#_37ee5e7460a3c16c1ba96e3ea381f265 | p@chr9:37037005..37037011, + |
| 3.9e-131 | FFCP PHASE2:Hg19::chr12:111106975..111106991,-#_9dfc9363bdc468570a390c2b0643dadf | p@chr12:111106975..111106991, - |
| 3.9e-131 | FFCP PHASE1:Hg19::chr12:111106975..111106991,-#_9dfc9363bdc468570a390c2b0643dadf | p@chr12:111106975..111106991, - |
| 3.51e-130 | FFCP PHASE2:Hg19::chr1:31225180..31225207,-#_6c6fa8ec10e94da6a5feeaeb0ccc1c10 | p@chr1:31225180..31225207, - |
| 3.51e-130 | FFCP PHASE1:Hg19::chr1:31225180..31225207,-#_6c6fa8ec10e94da6a5feeaeb0ccc1c10 | p@chr1:31225180..31225207, - |
| 5.16e-123 | FFCP PHASE1:Hg19::chr11:111228348..111228370,-#_7aedab77fbde0fe92b9d3f0b057f7f4c | p@chr11:111228348..111228370, - |
| 5.16e-123 | FFCP PHASE2:Hg19::chr11:111228348..111228370,-#_7aedab77fbde0fe92b9d3f0b057f7f4c | p@chr11:111228348..111228370, - |
| 9.65e-122 | FFCP PHASE2:Hg19::chr3:112178705..112178716,-#_33f8323775a6eb18e7d9055334d92f54 | p@chr3:112178705..112178716, - |
| 9.65e-122 | FFCP PHASE1:Hg19::chr3:112178705..112178716,-#_33f8323775a6eb18e7d9055334d92f54 | p@chr3:112178705..112178716, - |
| 5.62e-121 | FFCP PHASE1:Hg19::chr14:106329470..106329481,-#_722eb5e851529df7b5b765a78922cf85 | p1@IGHJ6 |
| 5.62e-121 | FFCP PHASE2:Hg19::chr14:106329470..106329481,-#_722eb5e851529df7b5b765a78922cf85 | p1@IGHJ6 |
| 1.12e-120 | FFCP PHASE1:Hg19::chr8:110535068..110535088,+#_b87f7c58a0c21c03e5fb371dda82e76e | p3@PKHD1L1 |
| 1.12e-120 | FFCP PHASE2:Hg19::chr8:110535068..110535088,+#_b87f7c58a0c21c03e5fb371dda82e76e | p3@PKHD1L1 |
| 4.51e-120 | FFCP PHASE2:Hg19::chr18:56631315..56631351,+#_149b9e4e2c8056e2888d6773c70dd20a | p@chr18:56631315..56631351, + |
| 4.51e-120 | FFCP PHASE1:Hg19::chr18:56631315..56631351,+#_149b9e4e2c8056e2888d6773c70dd20a | p@chr18:56631315..56631351, + |
| 5.49e-120 | FFCP PHASE1:Hg19::chr9:37284234..37284268,+#_121510dfd8a593f4d660e7acfc0fc4e6 | p3@ZCCHC7 |
| 5.49e-120 | FFCP PHASE2:Hg19::chr9:37284234..37284268,+#_121510dfd8a593f4d660e7acfc0fc4e6 | p3@ZCCHC7 |
| 2.35e-119 | FFCP PHASE2:Hg19::chr6:6587579..6587601,-#_f78b3c91e749c8daccc3a3b72ba87d08 | p3@LY86-AS1 |
| 2.35e-119 | FFCP PHASE1:Hg19::chr6:6587579..6587601,-#_f78b3c91e749c8daccc3a3b72ba87d08 | p3@LY86-AS1 |
| 7.68e-117 | FFCP PHASE1:Hg19::chr22:22398325..22398339,-#_6d89dac1752526579b04092d53722863 | p1@PRAMEL |
| 7.68e-117 | FFCP PHASE2:Hg19::chr22:22398325..22398339,-#_6d89dac1752526579b04092d53722863 | p1@PRAMEL |
| 1.23e-115 | FFCP PHASE2:Hg19::chr17:9955844..9955857,-#_ec6890792495791fd9e463732fc9d9c1 | p@chr17:9955844..9955857, - |
| 1.23e-115 | FFCP PHASE1:Hg19::chr17:9955844..9955857,-#_ec6890792495791fd9e463732fc9d9c1 | p@chr17:9955844..9955857, - |
| 1.66e-115 | FFCP PHASE2:Hg19::chr2:232536651..232536664,+#_53fabc6774721ee92d5c728186f4f496 | p@chr2:232536651..232536664, + |
| 1.66e-115 | FFCP PHASE1:Hg19::chr2:232536651..232536664,+#_53fabc6774721ee92d5c728186f4f496 | p@chr2:232536651..232536664, + |
| 5.28e-115 | FFCP PHASE1:Hg19::chr16:85936539..85936562,+#_13a6ec94aed736ef5d428af645461741 | p3@IRF8 |
| 5.28e-115 | FFCP PHASE2:Hg19::chr16:85936539..85936562,+#_13a6ec94aed736ef5d428af645461741 | p3@IRF8 |
| 7.49e-115 | FFCP PHASE1:Hg19::chr22:50318813..50318835,+#_2bec7212f8226d3b80cfca7efbee45a8 | p@chr22:50318813..50318835, + |
| 7.49e-115 | FFCP PHASE2:Hg19::chr22:50318813..50318835,+#_2bec7212f8226d3b80cfca7efbee45a8 | p@chr22:50318813..50318835, + |
| 1.85e-114 | FFCP PHASE1:Hg19::chr2:65159562..65159594,-#_08a4611cab06792518f3215588c0c2e8 | p1@LOC400958 |
| 1.85e-114 | FFCP PHASE2:Hg19::chr2:65159562..65159594,-#_08a4611cab06792518f3215588c0c2e8 | p1@LOC400958 |
| 2.05e-114 | FFCP PHASE1:Hg19::chr16:12059021..12059048,+#_e21ed523f90c21065a8eb8f3199b8902 | p2@TNFRSF17 |
| 2.05e-114 | FFCP PHASE2:Hg19::chr16:12059021..12059048,+#_e21ed523f90c21065a8eb8f3199b8902 | p2@TNFRSF17 |
| 3.02e-114 | FFCP PHASE2:Hg19::chr16:12058994..12059003,+#_89707f817c561d0e96bb2991de2b8279 | p4@TNFRSF17 |
| 3.02e-114 | FFCP PHASE1:Hg19::chr16:12058994..12059003,+#_89707f817c561d0e96bb2991de2b8279 | p4@TNFRSF17 |
| 4.49e-114 | FFCP PHASE1:Hg19::chr11:60233507..60233518,+#_1dd652d8a8f5cb95ecabc938e3f96e78 | p3@MS4A1 |
| 4.49e-114 | FFCP PHASE2:Hg19::chr11:60233507..60233518,+#_1dd652d8a8f5cb95ecabc938e3f96e78 | p3@MS4A1 |
| 2.12e-112 | FFCP PHASE2:Hg19::chr10:98460644..98460661,-#_f727d13442f8cfac881b3d7714822528 | p5@PIK3AP1 |
| 2.12e-112 | FFCP PHASE1:Hg19::chr10:98460644..98460661,-#_f727d13442f8cfac881b3d7714822528 | p5@PIK3AP1 |
| 2.96e-112 | FFCP PHASE1:Hg19::chr15:31523055..31523071,-#_c1271927bc99a25acf5fe04c12fc7bc9 | p1@LOC283710 |
| 2.96e-112 | FFCP PHASE2:Hg19::chr15:31523055..31523071,-#_c1271927bc99a25acf5fe04c12fc7bc9 | p1@LOC283710 |
| 9.89e-112 | FFCP PHASE2:Hg19::chr14:106328158..106328168,-#_2a1f4de17731afa3bc96b632c09d62b9 | p6@IGHM |
| 9.89e-112 | FFCP PHASE1:Hg19::chr14:106328158..106328168,-#_2a1f4de17731afa3bc96b632c09d62b9 | p6@IGHM |
| 8.67e-110 | FFCP PHASE2:Hg19::chr1:111670644..111670656,-#_d14c7e2212be006fcd77338e8de82a6f | p7@DRAM2 |
| 8.67e-110 | FFCP PHASE1:Hg19::chr1:111670644..111670656,-#_d14c7e2212be006fcd77338e8de82a6f | p7@DRAM2 |
| 2.9e-109 | FFCP PHASE1:Hg19::chr11:14346810..14346831,-#_071683d8e5f7b256d9f27b63e1b0b602 | p@chr11:14346810..14346831, - |
| 2.9e-109 | FFCP PHASE2:Hg19::chr11:14346810..14346831,-#_071683d8e5f7b256d9f27b63e1b0b602 | p@chr11:14346810..14346831, - |
| 4.14e-109 | FFCP PHASE1:Hg19::chr9:37027587..37027596,-#_30f2fbb29b002b5bcc626735e3c688df | p@chr9:37027587..37027596, - |
| 4.14e-109 | FFCP PHASE2:Hg19::chr8:11350850..11350859,+#_30f2fbb29b002b5bcc626735e3c688df | p@chr8:11350850..11350859, + |
| 4.14e-109 | FFCP PHASE2:Hg19::chr9:37027587..37027596,-#_30f2fbb29b002b5bcc626735e3c688df | p@chr9:37027587..37027596, - |
| 4.14e-109 | FFCP PHASE2:Hg19::chr11:111225012..111225024,-#_30f2fbb29b002b5bcc626735e3c688df | p@chr11:111225012..111225024, - |
| 4.14e-109 | FFCP PHASE1:Hg19::chr11:111225012..111225024,-#_30f2fbb29b002b5bcc626735e3c688df | p@chr11:111225012..111225024, - |
| 4.14e-109 | FFCP PHASE1:Hg19::chr8:11350850..11350859,+#_30f2fbb29b002b5bcc626735e3c688df | p@chr8:11350850..11350859, + |
| 5.57e-109 | FFCP PHASE2:Hg19::chr2:232536534..232536561,-#_5265f2302cf8e4099e92788acdf7a16e | p@chr2:232536534..232536561, - |
| 5.57e-109 | FFCP PHASE1:Hg19::chr2:232536534..232536561,-#_5265f2302cf8e4099e92788acdf7a16e | p@chr2:232536534..232536561, - |
| 6.72e-109 | FFCP PHASE1:Hg19::chr14:106321725..106321735,-#_0b243cf3258892195fe5ea8423ee5a6b | p7@FJ197674 |
| 6.72e-109 | FFCP PHASE2:Hg19::chr14:106321725..106321735,-#_0b243cf3258892195fe5ea8423ee5a6b | p7@FJ197674 |
| 2.91e-108 | FFCP PHASE1:Hg19::chr14:106328131..106328143,-#_a3f86db2f3f6cb2eae9d3ea782b6f9c2 | p4@IGHM |
| 2.91e-108 | FFCP PHASE2:Hg19::chr14:106328131..106328143,-#_a3f86db2f3f6cb2eae9d3ea782b6f9c2 | p4@IGHM |
| 4.43e-108 | FFCP PHASE1:Hg19::chr19:18209729..18209742,-#_96dd8edc1ca87cbef25d70e544812c1c | p3@IL12RB1 |
| 4.43e-108 | FFCP PHASE2:Hg19::chr19:18209729..18209742,-#_96dd8edc1ca87cbef25d70e544812c1c | p3@IL12RB1 |
| 6.46e-108 | FFCP PHASE1:Hg19::chr13:31019875..31019895,+#_bfcb34db62ac0b2bc12cce4758d13adb | p@chr13:31019875..31019895, + |
| 6.46e-108 | FFCP PHASE2:Hg19::chr13:31019875..31019895,+#_bfcb34db62ac0b2bc12cce4758d13adb | p@chr13:31019875..31019895, + |
| 3.54e-107 | FFCP PHASE2:Hg19::chr12:111107001..111107019,-#_21423403e2ea2c74cc098323f2bd1885 | p@chr12:111107001..111107019, - |
| 3.54e-107 | FFCP PHASE1:Hg19::chr12:111107001..111107019,-#_21423403e2ea2c74cc098323f2bd1885 | p@chr12:111107001..111107019, - |
| 2.64e-106 | FFCP PHASE2:Hg19::chr2:17934493..17934510,+#_28457528318ac1669ac550c6d0e6124a | p@chr2:17934493..17934510, + |
| 2.64e-106 | FFCP PHASE1:Hg19::chr2:17934493..17934510,+#_28457528318ac1669ac550c6d0e6124a | p@chr2:17934493..17934510, + |
| 8.6e-106 | FFCP PHASE2:Hg19::chr19:7764975..7764994,-#_e67dea2d4dd5a61fadd215830df7ed62 | p7@FCER2 |
| 8.6e-106 | FFCP PHASE1:Hg19::chr19:7764975..7764994,-#_e67dea2d4dd5a61fadd215830df7ed62 | p7@FCER2 |
| 2.32e-105 | FFCP PHASE1:Hg19::chr19:42385139..42385152,+#_e6f34e1dd372d40375ac14fb1496d567 | p@chr19:42385139..42385152, + |
| 2.32e-105 | FFCP PHASE2:Hg19::chr19:42385139..42385152,+#_e6f34e1dd372d40375ac14fb1496d567 | p@chr19:42385139..42385152, + |
| 3.56e-105 | FFCP PHASE2:Hg19::chr22:42322346..42322363,-#_6910b6e077beb960610948ed7328002c | p@chr22:42322346..42322363, - |
| 3.56e-105 | FFCP PHASE1:Hg19::chr22:42322346..42322363,-#_6910b6e077beb960610948ed7328002c | p@chr22:42322346..42322363, - |
| 4.83e-105 | FFCP PHASE1:Hg19::chr11:111224975..111224995,-#_46225bb3ba3a779cc2943ae002c2ad2f | p@chr11:111224975..111224995, - |
| 4.83e-105 | FFCP PHASE2:Hg19::chr11:111224975..111224995,-#_46225bb3ba3a779cc2943ae002c2ad2f | p@chr11:111224975..111224995, - |
| 7.41e-105 | FFCP PHASE1:Hg19::chr11:111225158..111225201,+#_d8060d5ad7398147e7a79c1b6bff3ca4 | p1@CU689419 |
| 7.41e-105 | FFCP PHASE2:Hg19::chr11:111225158..111225201,+#_d8060d5ad7398147e7a79c1b6bff3ca4 | p1@CU689419 |
| 1.77e-104 | FFCP PHASE2:Hg19::chr11:111225132..111225169,-#_043ecd3a342e539c9861d401ce00bb39 | p@chr11:111225132..111225169, - |
| 1.77e-104 | FFCP PHASE1:Hg19::chr11:111225132..111225169,-#_043ecd3a342e539c9861d401ce00bb39 | p@chr11:111225132..111225169, - |
| 6.11e-104 | FFCP PHASE1:Hg19::chr9:95491611..95491638,-#_1daa1d557ef41cf54b8a60401c9566a1 | p@chr9:95491611..95491638, - |
| 6.11e-104 | FFCP PHASE2:Hg19::chr9:95491611..95491638,-#_1daa1d557ef41cf54b8a60401c9566a1 | p@chr9:95491611..95491638, - |
| 5.34e-103 | FFCP PHASE2:Hg19::chr8:110535027..110535055,+#_826cf9ecbb110827960a8b96f965af4c | p2@PKHD1L1 |
| 5.34e-103 | FFCP PHASE1:Hg19::chr8:110535027..110535055,+#_826cf9ecbb110827960a8b96f965af4c | p2@PKHD1L1 |
| 7.65e-103 | FFCP PHASE1:Hg19::chr14:106321710..106321722,-#_bfbe39fabe75e0532a0d94195df42426 | p3@FJ197674 |
| 7.65e-103 | FFCP PHASE2:Hg19::chr14:106321710..106321722,-#_bfbe39fabe75e0532a0d94195df42426 | p3@FJ197674 |
| 6.14e-102 | FFCP PHASE1:Hg19::chr19:35837510..35837514,+#_da5034cb558a9b4584a6f29842c63db0 | p@chr19:35837510..35837514, + |
| 6.14e-102 | FFCP PHASE2:Hg19::chr19:35837510..35837514,+#_da5034cb558a9b4584a6f29842c63db0 | p@chr19:35837510..35837514, + |
| 1.06e-101 | FFCP PHASE2:Hg19::chr11:111225198..111225226,-#_f0eac9f91487ae39172359b4a126a5a2 | p@chr11:111225198..111225226, - |
| 1.06e-101 | FFCP PHASE1:Hg19::chr11:111225198..111225226,-#_f0eac9f91487ae39172359b4a126a5a2 | p@chr11:111225198..111225226, - |
| 1.28e-101 | FFCP PHASE2:Hg19::chr14:106322154..106322163,-#_d284cac67b8071a2661a06199a299616 | p3@AJ294734 |
| 1.28e-101 | FFCP PHASE1:Hg19::chr14:106322154..106322163,-#_d284cac67b8071a2661a06199a299616 | p3@AJ294734 |
