UBERON:0003073: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 18: | Line 18: | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of=UBERON:0000076;;UBERON:0010312 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Ectodermal primordium of the lens of the eye. Kimmel et al, 1995.[TAO]" xsd:string | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Ectodermal primordium of the lens of the eye. Kimmel et al, 1995.[TAO]" xsd:string | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 13:33, 27 June 2012
| Name: | lens placode | ||
|---|---|---|---|
| Definition: | "A thickened portion of ectoderm which serves as the precursor to the lens. SOX2 and Pou2f1 are involved in its development[WP]." [Wikipedia:Lens_placode, ZFIN:curator] | ||
| Xrefs: |
| ||
| Synonyms: | "placoda lentis" RELATED LATIN [Wikipedia:Lens_placode] | ||
| Comments: | Classical transplantation experiments using amphibian embryos suggested that the optic vesicle is the source of lens-inducing signals sufficient to generate lens tissues in competent ectoderm (reviewed in Grainger et al., 1996). More recent findings suggest a multistep model for lens induction. There is now good evidence that lens specification occurs at the neurula stage, before the optic vesicle contact the surface ectoderm, and that neural crest cell migration in the frontonasal region is required to restrict the position of the lens placode (Bailey et al., 2006)[NBK53175] | ||
| Alt_id: | UBERON:XAO_0000240-ZFA_0000122 | ||
| Subset: |
uberon_slim vertebrate_core |
Gray864.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002546(cranial placode),UBERON:0010312(immature eye) |
|---|---|
| part_of: | UBERON:0000076(external ectoderm),UBERON:0010312(immature eye) |
Children
| develops from: | UBERON:0000965 (lens of camera-type eye),UBERON:0005426 (lens vesicle) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003073 (lens placode), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.41e-88 | FFCP PHASE1:Hg19::chr22:25595823..25595826,+#_1210ba7537b0a9ddbd04e6defaace213 | p1@CRYBB3 |
| 1.41e-88 | FFCP PHASE2:Hg19::chr22:25595823..25595826,+#_1210ba7537b0a9ddbd04e6defaace213 | p1@CRYBB3 |
| 3.32e-74 | FFCP PHASE2:Hg19::chr22:25615600..25615611,+#_1ecb723c4dd9f07483dad4408d0640c0 | p1@CRYBB2 |
| 3.32e-74 | FFCP PHASE1:Hg19::chr22:25615600..25615611,+#_1ecb723c4dd9f07483dad4408d0640c0 | p1@CRYBB2 |
| 5.48e-74 | FFCP PHASE2:Hg19::chr19:51891222..51891233,-#_3b3315cbe7bfb4f628f6d5f0beac1681 | p1@LIM2 |
| 5.48e-74 | FFCP PHASE1:Hg19::chr19:51891222..51891233,-#_3b3315cbe7bfb4f628f6d5f0beac1681 | p1@LIM2 |
| 3.8e-56 | FFCP PHASE1:Hg19::chr22:27017921..27017928,+#_1eb6cbf2e00021636f407d8e934fcf64 | p1@CRYBA4 |
| 3.8e-56 | FFCP PHASE2:Hg19::chr22:27017921..27017928,+#_1eb6cbf2e00021636f407d8e934fcf64 | p1@CRYBA4 |
| 3.1e-50 | FFCP PHASE1:Hg19::chr13:104778247..104778293,+#_5e3d4c844706d4e1d3ef97b733a305f2 | p@chr13:104778247..104778293, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr13:104778247..104778293,+#_5e3d4c844706d4e1d3ef97b733a305f2 | p@chr13:104778247..104778293, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr20:61204240..61204241,+#_5e3d4c844706d4e1d3ef97b733a305f2 | p@chr20:61204240..61204241, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr20:61204240..61204241,+#_5e3d4c844706d4e1d3ef97b733a305f2 | p@chr20:61204240..61204241, + |
| 5.14e-50 | FFCP PHASE1:Hg19::chr21:44592820..44592840,-#_c51b472fdd8a1b85496e9ff7bbe90700 | p2@CU686889 |
| 5.14e-50 | FFCP PHASE1:Hg19::chr14:37642016..37642022,-#_c51b472fdd8a1b85496e9ff7bbe90700 | p7@SLC25A21 |
| 5.14e-50 | FFCP PHASE2:Hg19::chr14:37642016..37642022,-#_c51b472fdd8a1b85496e9ff7bbe90700 | p7@SLC25A21 |
| 5.14e-50 | FFCP PHASE2:Hg19::chr21:44592820..44592840,-#_c51b472fdd8a1b85496e9ff7bbe90700 | p2@CU686889 |
| 6.6e-50 | FFCP PHASE2:Hg19::chr21:44592842..44592867,-#_2b900d55a03bed2391ada198693b9e63 | p1@CU686889 |
| 6.6e-50 | FFCP PHASE2:Hg19::chr12:132475501..132475504,+#_2b900d55a03bed2391ada198693b9e63 | p@chr12:132475501..132475504, + |
| 6.6e-50 | FFCP PHASE1:Hg19::chr12:132475501..132475504,+#_2b900d55a03bed2391ada198693b9e63 | p@chr12:132475501..132475504, + |
| 6.6e-50 | FFCP PHASE2:Hg19::chr21:44589339..44589372,-#_2b900d55a03bed2391ada198693b9e63 | p@chr21:44589339..44589372, - |
| 6.6e-50 | FFCP PHASE1:Hg19::chr21:44592842..44592867,-#_2b900d55a03bed2391ada198693b9e63 | p1@CU686889 |
| 6.6e-50 | FFCP PHASE1:Hg19::chr21:44589339..44589372,-#_2b900d55a03bed2391ada198693b9e63 | p@chr21:44589339..44589372, - |
| 6.27e-44 | FFCP PHASE1:Hg19::chr11:31827535..31827565,-#_c3893329f233e61fb399aefee197b5c6 | p11@PAX6 |
| 6.27e-44 | FFCP PHASE2:Hg19::chr11:31827535..31827565,-#_c3893329f233e61fb399aefee197b5c6 | p11@PAX6 |
| 1.92e-41 | FFCP PHASE1:Hg19::chr3:186262166..186262170,-#_b08f70fe5f20e9bd500eb415622aa614 | p1@CRYGS |
| 1.92e-41 | FFCP PHASE2:Hg19::chr3:186262166..186262170,-#_b08f70fe5f20e9bd500eb415622aa614 | p1@CRYGS |
| 4.94e-40 | FFCP PHASE1:Hg19::chr5:112173525..112173532,+#_b294001efb5f0930a84d0bdcf7919ffc | p@chr5:112173525..112173532, + |
| 4.94e-40 | FFCP PHASE2:Hg19::chr5:112173525..112173532,+#_b294001efb5f0930a84d0bdcf7919ffc | p@chr5:112173525..112173532, + |
| 1.62e-37 | FFCP PHASE1:Hg19::chr1:29586692..29586705,+#_184e0d8f28920daf18c496133e0f9141 | p7@PTPRU |
| 1.62e-37 | FFCP PHASE2:Hg19::chr1:29586692..29586705,+#_184e0d8f28920daf18c496133e0f9141 | p7@PTPRU |
| 2.1e-35 | FFCP PHASE1:Hg19::chr14:60975644..60975673,+#_042c8aeab2b95d0ab48adff70eb37352 | p3@SIX6 |
| 2.1e-35 | FFCP PHASE2:Hg19::chr14:60975644..60975673,+#_042c8aeab2b95d0ab48adff70eb37352 | p3@SIX6 |
| 6.73e-35 | FFCP PHASE1:Hg19::chr14:60975871..60975880,+#_c2d02a6d2ed366da62facbc73354c1e8 | p4@SIX6 |
| 6.73e-35 | FFCP PHASE2:Hg19::chr14:60975871..60975880,+#_c2d02a6d2ed366da62facbc73354c1e8 | p4@SIX6 |
| 5.06e-34 | FFCP PHASE1:Hg19::chr11:31667372..31667383,-#_9ae2067beba8f51ee156c4e1a3267952 | p@chr11:31667372..31667383, - |
| 5.06e-34 | FFCP PHASE2:Hg19::chr11:31667372..31667383,-#_9ae2067beba8f51ee156c4e1a3267952 | p@chr11:31667372..31667383, - |
| 8.36e-34 | FFCP PHASE1:Hg19::chr19:1470631..1470648,-#_12b4754692e85e1fa5fabce4bf7ee015 | p@chr19:1470631..1470648, - |
| 8.36e-34 | FFCP PHASE2:Hg19::chr19:1470631..1470648,-#_12b4754692e85e1fa5fabce4bf7ee015 | p@chr19:1470631..1470648, - |
| 5.55e-33 | FFCP PHASE2:Hg19::chr21:44589135..44589151,+#_b7c4c420f740dd8e4fa54fe572a705e8 | p1@CRYAA |
| 5.55e-33 | FFCP PHASE1:Hg19::chr21:44589135..44589151,+#_b7c4c420f740dd8e4fa54fe572a705e8 | p1@CRYAA |
| 9.55e-33 | FFCP PHASE2:Hg19::chr17:27573875..27573878,+#_2fd7c377a3d75c5450e9294b7bda726f | p1@CRYBA1 |
| 9.55e-33 | FFCP PHASE1:Hg19::chr17:27573875..27573878,+#_2fd7c377a3d75c5450e9294b7bda726f | p1@CRYBA1 |
| 2.74e-29 | FFCP PHASE2:Hg19::chr2:45168589..45168601,-#_e354c73c00362b493a5c51bb823d24a8 | p2@ENST00000456467 |
| 2.74e-29 | FFCP PHASE1:Hg19::chr2:45168589..45168601,-#_e354c73c00362b493a5c51bb823d24a8 | p2@ENST00000456467 |
| 3.65e-29 | FFCP PHASE2:Hg19::chr7:107883678..107883689,-#_6042122c156f2cea0e18aec1bfee19fb | p13@NRCAM |
| 3.65e-29 | FFCP PHASE1:Hg19::chr7:107883678..107883689,-#_6042122c156f2cea0e18aec1bfee19fb | p13@NRCAM |
| 7.46e-29 | FFCP PHASE1:Hg19::chr13:114202163..114202178,+#_98bf3b4c7616b2327ea403fdfb9e0c3c | p@chr13:114202163..114202178, + |
| 7.46e-29 | FFCP PHASE2:Hg19::chr13:114202163..114202178,+#_98bf3b4c7616b2327ea403fdfb9e0c3c | p@chr13:114202163..114202178, + |
| 1.36e-28 | FFCP PHASE2:Hg19::chr3:173116225..173116242,+#_5df463a49aff9bc8574d957f7d79ddb2 | p10@NLGN1 |
| 1.36e-28 | FFCP PHASE1:Hg19::chr3:173116225..173116242,+#_5df463a49aff9bc8574d957f7d79ddb2 | p10@NLGN1 |
| 2.64e-27 | FFCP PHASE1:Hg19::chr2:45169233..45169244,+#_fb3c83fad2de8aa80b16d70ae71a1aad | p10@SIX3 |
| 2.64e-27 | FFCP PHASE2:Hg19::chr2:45169233..45169244,+#_fb3c83fad2de8aa80b16d70ae71a1aad | p10@SIX3 |
| 8.39e-27 | FFCP PHASE2:Hg19::chr14:60975858..60975869,+#_b0aed23562ca46313d56eb5b050976a7 | p2@SIX6 |
| 8.39e-27 | FFCP PHASE1:Hg19::chr14:60975858..60975869,+#_b0aed23562ca46313d56eb5b050976a7 | p2@SIX6 |
| 5.56e-26 | FFCP PHASE2:Hg19::chr3:150690809..150690822,-#_b8084f8bd7d0ab2dcca57659dbfa8447 | p3@CLRN1 |
| 5.56e-26 | FFCP PHASE1:Hg19::chr9:75848662..75848671,-#_b8084f8bd7d0ab2dcca57659dbfa8447 | p@chr9:75848662..75848671, - |
| 5.56e-26 | FFCP PHASE2:Hg19::chrX:43587410..43587413,+#_b8084f8bd7d0ab2dcca57659dbfa8447 | p@chrX:43587410..43587413, + |
| 5.56e-26 | FFCP PHASE1:Hg19::chr19:40920692..40920700,-#_b8084f8bd7d0ab2dcca57659dbfa8447 | p@chr19:40920692..40920700, - |
| 5.56e-26 | FFCP PHASE2:Hg19::chr1:147374915..147374932,+#_b8084f8bd7d0ab2dcca57659dbfa8447 | p1@GJA8 |
| 5.56e-26 | FFCP PHASE1:Hg19::chr3:150690809..150690822,-#_b8084f8bd7d0ab2dcca57659dbfa8447 | p3@CLRN1 |
| 5.56e-26 | FFCP PHASE2:Hg19::chr20:35861148..35861151,+#_b8084f8bd7d0ab2dcca57659dbfa8447 | p@chr20:35861148..35861151, + |
| 5.56e-26 | FFCP PHASE1:Hg19::chrX:43587410..43587413,+#_b8084f8bd7d0ab2dcca57659dbfa8447 | p@chrX:43587410..43587413, + |
| 5.56e-26 | FFCP PHASE2:Hg19::chr9:75848662..75848671,-#_b8084f8bd7d0ab2dcca57659dbfa8447 | p@chr9:75848662..75848671, - |
| 5.56e-26 | FFCP PHASE1:Hg19::chr1:147374915..147374932,+#_b8084f8bd7d0ab2dcca57659dbfa8447 | p1@GJA8 |
| 5.56e-26 | FFCP PHASE2:Hg19::chr19:40920692..40920700,-#_b8084f8bd7d0ab2dcca57659dbfa8447 | p@chr19:40920692..40920700, - |
| 5.56e-26 | FFCP PHASE1:Hg19::chr20:35861148..35861151,+#_b8084f8bd7d0ab2dcca57659dbfa8447 | p@chr20:35861148..35861151, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr16:85617064..85617073,-#_dcfab7a626c48003c70e8e8abbfed385 | p@chr16:85617064..85617073, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr5:464155..464205,+#_dcfab7a626c48003c70e8e8abbfed385 | p@chr5:464155..464205, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr21:44592512..44592521,+#_dcfab7a626c48003c70e8e8abbfed385 | p@chr21:44592512..44592521, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr20:33903184..33903189,-#_dcfab7a626c48003c70e8e8abbfed385 | p11@UQCC |
| 7.14e-26 | FFCP PHASE1:Hg19::chr21:44592358..44592365,+#_dcfab7a626c48003c70e8e8abbfed385 | p@chr21:44592358..44592365, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr1:115873480..115873484,+#_dcfab7a626c48003c70e8e8abbfed385 | p@chr1:115873480..115873484, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr21:36253916..36253918,-#_dcfab7a626c48003c70e8e8abbfed385 | p@chr21:36253916..36253918, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr5:124468141..124468176,-#_dcfab7a626c48003c70e8e8abbfed385 | p@chr5:124468141..124468176, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr12:56848437..56848442,-#_dcfab7a626c48003c70e8e8abbfed385 | p1@MIP |
| 7.14e-26 | FFCP PHASE2:Hg19::chr8:94870047..94870056,+#_dcfab7a626c48003c70e8e8abbfed385 | p30@PDP1 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr13:44875179..44875188,-#_dcfab7a626c48003c70e8e8abbfed385 | p@chr13:44875179..44875188, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr11:65361417..65361421,-#_dcfab7a626c48003c70e8e8abbfed385 | p2@KCNK7 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr21:44592788..44592807,+#_dcfab7a626c48003c70e8e8abbfed385 | p@chr21:44592788..44592807, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr11:65361417..65361421,-#_dcfab7a626c48003c70e8e8abbfed385 | p2@KCNK7 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr1:86064794..86064797,+#_dcfab7a626c48003c70e8e8abbfed385 | p1@ENST00000426794 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr2:10538258..10538282,+#_dcfab7a626c48003c70e8e8abbfed385 | p@chr2:10538258..10538282, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr3:156322310..156322314,-#_dcfab7a626c48003c70e8e8abbfed385 | p@chr3:156322310..156322314, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr5:45038620..45038622,+#_dcfab7a626c48003c70e8e8abbfed385 | p@chr5:45038620..45038622, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr7:123198284..123198329,-#_dcfab7a626c48003c70e8e8abbfed385 | p3@NDUFA5 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr21:44592626..44592635,-#_dcfab7a626c48003c70e8e8abbfed385 | p5@CU686889 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr19:41727698..41727705,+#_dcfab7a626c48003c70e8e8abbfed385 | p@chr19:41727698..41727705, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr16:17563573..17563582,+#_dcfab7a626c48003c70e8e8abbfed385 | p@chr16:17563573..17563582, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr16:17563573..17563582,+#_dcfab7a626c48003c70e8e8abbfed385 | p@chr16:17563573..17563582, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr2:693025..693036,+#_dcfab7a626c48003c70e8e8abbfed385 | p@chr2:693025..693036, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr8:94870047..94870056,+#_dcfab7a626c48003c70e8e8abbfed385 | p30@PDP1 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr13:72440726..72440736,-#_dcfab7a626c48003c70e8e8abbfed385 | p19@DACH1 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr19:17137781..17137792,-#_dcfab7a626c48003c70e8e8abbfed385 | p6@CPAMD8 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr9:100057272..100057276,+#_dcfab7a626c48003c70e8e8abbfed385 | p@chr9:100057272..100057276, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr16:85617064..85617073,-#_dcfab7a626c48003c70e8e8abbfed385 | p@chr16:85617064..85617073, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr5:464155..464205,+#_dcfab7a626c48003c70e8e8abbfed385 | p@chr5:464155..464205, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr21:44592750..44592758,-#_dcfab7a626c48003c70e8e8abbfed385 | p4@CU686889 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr4:140656282..140656285,-#_dcfab7a626c48003c70e8e8abbfed385 | p@chr4:140656282..140656285, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr21:44592512..44592521,+#_dcfab7a626c48003c70e8e8abbfed385 | p@chr21:44592512..44592521, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr21:36253916..36253918,-#_dcfab7a626c48003c70e8e8abbfed385 | p@chr21:36253916..36253918, - |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Ectodermal primordium of the lens of the eye. Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
