UBERON:0004815: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 18: | Line 18: | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of=UBERON:0001558 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} |
Revision as of 13:37, 27 June 2012
Name: | lower respiratory tract epithelium | |
---|---|---|
Definition: | "An epithelium that is part of a lower respiratory tract [Obol]." [OBOL:automatic] | |
Xrefs: |
| |
Synonyms: |
"epithelial tissue of lower respiratory tract" EXACT [OBOL:automatic] "epithelium of lower respiratory tract" EXACT [OBOL:automatic] "lower respiratory tract epithelial tissue" EXACT [OBOL:automatic] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0004802(respiratory tract epithelium) |
---|---|
part_of: | UBERON:0001558(lower respiratory tract) |
Children
is a: | UBERON:0000115 (lung epithelium),UBERON:0002031 (epithelium of bronchus) |
---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11453-119A4 (Bronchial Epithelial Cell, donor4)
- 11457-119A8 (Bronchial Epithelial Cell, donor5)
- 11461-119B3 (Bronchial Epithelial Cell, donor6)
- 11511-119G8 (Bronchial Epithelial Cell, donor1)
- 11591-120G7 (Bronchial Epithelial Cell, donor2)
- 11672-122G7 (Bronchial Epithelial Cell, donor3)
- 11769-123I5 (Bronchial Epithelial Cell, donor7)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004815 (lower respiratory tract epithelium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data