UBERON:0007690: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 15: | Line 15: | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from=UBERON:0000925 | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of=UBERON:0008814;;UBERON:0009722 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 13:43, 27 June 2012
| Name: | early pharyngeal endoderm | ||
|---|---|---|---|
| Definition: | "." [1] | ||
| Xrefs: |
| ||
| Synonyms: |
"early pharyngeal arch endoderm" EXACT [EHDAA2:0001457] "pharyngeal arch endoderm" RELATED [] "pharyngeal endoderm" RELATED [ZFA:0001104] "pharyngeal region endoderm" RELATED [EHDAA2:0001456] | ||
| Comments: | relation conflict: ZFA vs EHDAA2. Note EHDAA2 term renamed to 'early PA endoderm' |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000925(endoderm),UBERON:0004119(endoderm-derived structure) |
|---|---|
| develops_from: | UBERON:0000925(endoderm) |
| part_of: | UBERON:0008814(pharyngeal arch system),UBERON:0009722(entire pharyngeal arch endoderm) |
Children
| develops from: | UBERON:0003351 (pharyngeal epithelium),UBERON:0004117 (pharyngeal pouch),UBERON:0005562 (thymus primordium) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007690 (early pharyngeal endoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.76e-68 | FFCP PHASE2:Mm9::chr6:41483113..41483131,+#_28afe21f1226cb216e14232c453bf846 | p4@uc009bpa.1 |
| 1.76e-68 | FFCP PHASE1:Mm9::chr6:41483113..41483131,+#_28afe21f1226cb216e14232c453bf846 | p4@uc009bpa.1 |
| 2.4e-67 | FFCP PHASE1:Mm9::chr6:41483037..41483046,+#_0e6bc5816219dd42cd5171b8894ed8b3 | p8@uc009bpa.1 |
| 2.4e-67 | FFCP PHASE2:Mm9::chr6:41483037..41483046,+#_0e6bc5816219dd42cd5171b8894ed8b3 | p8@uc009bpa.1 |
| 1.12e-65 | FFCP PHASE1:Mm9::chr6:41485075..41485096,+#_6c9f22eabb8f53699d9f7d56378ff157 | p1@ENSMUST00000103288, p1@uc009bpl.1 |
| 1.12e-65 | FFCP PHASE2:Mm9::chr6:41485075..41485096,+#_6c9f22eabb8f53699d9f7d56378ff157 | p1@ENSMUST00000103288, p1@uc009bpl.1 |
| 2.12e-64 | FFCP PHASE1:Mm9::chr6:41491752..41491776,-#_1c5287b22385082565c80194d75776ac | p@chr6:41491752..41491776, - |
| 2.12e-64 | FFCP PHASE2:Mm9::chr12:108361918..108361930,-#_1c5287b22385082565c80194d75776ac | p@chr12:108361918..108361930, - |
| 2.12e-64 | FFCP PHASE2:Mm9::chr6:41491752..41491776,-#_1c5287b22385082565c80194d75776ac | p@chr6:41491752..41491776, - |
| 2.12e-64 | FFCP PHASE1:Mm9::chr12:108361918..108361930,-#_1c5287b22385082565c80194d75776ac | p@chr12:108361918..108361930, - |
| 3.88e-63 | FFCP PHASE1:Mm9::chr6:41483173..41483188,+#_71850c4c118a63aa6a9e7c33ec8acfa2 | p2@ENSMUST00000103283 |
| 3.88e-63 | FFCP PHASE2:Mm9::chr6:41483173..41483188,+#_71850c4c118a63aa6a9e7c33ec8acfa2 | p2@ENSMUST00000103283 |
| 4.88e-63 | FFCP PHASE1:Mm9::chr6:41484803..41484826,+#_ad648a589a0b90a57c9e8521c6975d6c | p1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1 |
| 4.88e-63 | FFCP PHASE2:Mm9::chr6:41484803..41484826,+#_ad648a589a0b90a57c9e8521c6975d6c | p1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1 |
| 7.68e-62 | FFCP PHASE1:Mm9::chr9:44807434..44807445,-#_c02afa086c813293e04b3cc61ed3759c | p@chr9:44807434..44807445, - |
| 7.68e-62 | FFCP PHASE2:Mm9::chr9:44807434..44807445,-#_c02afa086c813293e04b3cc61ed3759c | p@chr9:44807434..44807445, - |
| 1.0e-61 | FFCP PHASE2:Mm9::chr6:41494001..41494028,+#_a2cfbcf0478b13963436f2891cf2cb5e | p@chr6:41494001..41494028, + |
| 1.0e-61 | FFCP PHASE1:Mm9::chr6:41494001..41494028,+#_a2cfbcf0478b13963436f2891cf2cb5e | p@chr6:41494001..41494028, + |
| 2.4e-61 | FFCP PHASE2:Mm9::chr9:44809185..44809215,-#_302486934dfba12730ca70a6f40e1766 | p@chr9:44809185..44809215, - |
| 2.4e-61 | FFCP PHASE1:Mm9::chr9:44809185..44809215,-#_302486934dfba12730ca70a6f40e1766 | p@chr9:44809185..44809215, - |
| 2.59e-61 | FFCP PHASE2:Mm9::chr2:11093788..11093799,+#_634db4777e5fdb340d4ebeb4d49f7e53 | p11@Prkcq |
| 2.59e-61 | FFCP PHASE1:Mm9::chr2:11093788..11093799,+#_634db4777e5fdb340d4ebeb4d49f7e53 | p11@Prkcq |
| 8.25e-61 | FFCP PHASE2:Mm9::chr14:54791784..54791787,+#_ed964fdedb8ea2730cc035d165c5aa66 | p@chr14:54791784..54791787, + |
| 8.25e-61 | FFCP PHASE1:Mm9::chr14:54791784..54791787,+#_ed964fdedb8ea2730cc035d165c5aa66 | p@chr14:54791784..54791787, + |
| 1.47e-60 | FFCP PHASE1:Mm9::chr6:40997465..40997489,+#_3b2843e677e153e277ab43a3605cafcd | p1@ENSMUST00000103263 |
| 1.47e-60 | FFCP PHASE2:Mm9::chr6:40997465..40997489,+#_3b2843e677e153e277ab43a3605cafcd | p1@ENSMUST00000103263 |
| 2.74e-60 | FFCP PHASE1:Mm9::chr10:28388454..28388458,+#_4b3b04d42fd60e37195194f6e882ec97 | p5@Themis |
| 2.74e-60 | FFCP PHASE2:Mm9::chr10:28388454..28388458,+#_4b3b04d42fd60e37195194f6e882ec97 | p5@Themis |
| 3.21e-60 | FFCP PHASE2:Mm9::chr6:41482920..41482933,+#_6b6439ef8b2d1843ffbe62f6437b387c | p5@uc009bpa.1 |
| 3.21e-60 | FFCP PHASE1:Mm9::chr6:41482920..41482933,+#_6b6439ef8b2d1843ffbe62f6437b387c | p5@uc009bpa.1 |
| 3.77e-60 | FFCP PHASE2:Mm9::chr9:44793518..44793537,+#_09edb14107227295c4714293df53ebe2 | p@chr9:44793518..44793537, + |
| 3.77e-60 | FFCP PHASE1:Mm9::chr9:44793518..44793537,+#_09edb14107227295c4714293df53ebe2 | p@chr9:44793518..44793537, + |
| 4.87e-60 | FFCP PHASE2:Mm9::chr6:41071548..41071565,+#_cd2225ff8f4b86beb98e802ea2280c68 | p@chr6:41071548..41071565, + |
| 4.87e-60 | FFCP PHASE1:Mm9::chr6:41071548..41071565,+#_cd2225ff8f4b86beb98e802ea2280c68 | p@chr6:41071548..41071565, + |
| 9.63e-60 | FFCP PHASE1:Mm9::chr6:40997323..40997349,+#_82ede143d7c4ef1eaff4031744a7abf9 | p2@uc009bnp.1, p2@uc012eki.1 |
| 9.63e-60 | FFCP PHASE2:Mm9::chr6:40997323..40997349,+#_82ede143d7c4ef1eaff4031744a7abf9 | p2@uc009bnp.1, p2@uc012eki.1 |
| 5.49e-59 | FFCP PHASE1:Mm9::chr11:52095797..52095809,-#_d57705088d3b3ce58036cccab489e689 | p5@Tcf7 |
| 5.49e-59 | FFCP PHASE2:Mm9::chr11:52095797..52095809,-#_d57705088d3b3ce58036cccab489e689 | p5@Tcf7 |
| 2.14e-58 | FFCP PHASE2:Mm9::chr14:61328148..61328173,+#_6048b45d81a89702f2f892cba95027ee | p@chr14:61328148..61328173, + |
| 2.14e-58 | FFCP PHASE1:Mm9::chr14:61328148..61328173,+#_6048b45d81a89702f2f892cba95027ee | p@chr14:61328148..61328173, + |
| 3.25e-58 | FFCP PHASE1:Mm9::chr6:41483016..41483036,+#_1daf6932736e86769a08f1a84b2333b9 | p2@uc009bpa.1 |
| 3.25e-58 | FFCP PHASE2:Mm9::chr6:41483016..41483036,+#_1daf6932736e86769a08f1a84b2333b9 | p2@uc009bpa.1 |
| 3.74e-58 | FFCP PHASE2:Mm9::chrX:39855684..39855699,+#_58a9156c9e13febdb4dbab6cf0175ef9 | p2@Sh2d1a |
| 3.74e-58 | FFCP PHASE1:Mm9::chrX:39855684..39855699,+#_58a9156c9e13febdb4dbab6cf0175ef9 | p2@Sh2d1a |
| 7.15e-58 | FFCP PHASE1:Mm9::chr6:41128981..41128995,+#_05b88455d351f24e46e51f5b223d2b07 | p1@uc012ekr.1 |
| 7.15e-58 | FFCP PHASE2:Mm9::chr6:41128981..41128995,+#_05b88455d351f24e46e51f5b223d2b07 | p1@uc012ekr.1 |
| 9.05e-58 | FFCP PHASE2:Mm9::chr6:40841675..40841691,+#_4ca5a66558141c869bb01d2ae72986cd | p2@1810009J06Rik |
| 9.05e-58 | FFCP PHASE1:Mm9::chr6:40841675..40841691,+#_4ca5a66558141c869bb01d2ae72986cd | p2@1810009J06Rik |
| 1.34e-57 | FFCP PHASE2:Mm9::chr6:41066036..41066054,+#_d3296e54e9cd8580f53624b94c98ce1b | p1@uc012ekk.1 |
| 1.34e-57 | FFCP PHASE1:Mm9::chr6:41066036..41066054,+#_d3296e54e9cd8580f53624b94c98ce1b | p1@uc012ekk.1 |
| 1.56e-57 | FFCP PHASE2:Mm9::chr6:41491943..41491953,+#_f1e25a05fa761ffb03ac90924f6db471 | p3@uc009bpo.1, p3@uc009bpp.1 |
| 1.56e-57 | FFCP PHASE1:Mm9::chr6:41491943..41491953,+#_f1e25a05fa761ffb03ac90924f6db471 | p3@uc009bpo.1, p3@uc009bpp.1 |
| 1.56e-57 | FFCP PHASE2:Mm9::chr6:41009432..41009454,+#_f1e25a05fa761ffb03ac90924f6db471 | p1@ENSMUST00000103265 |
| 1.56e-57 | FFCP PHASE1:Mm9::chr6:41009432..41009454,+#_f1e25a05fa761ffb03ac90924f6db471 | p1@ENSMUST00000103265 |
| 3.61e-57 | FFCP PHASE1:Mm9::chr7:133512043..133512060,-#_a192a04fae89bf0d59c7c780246e1445 | p@chr7:133512043..133512060, - |
| 3.61e-57 | FFCP PHASE2:Mm9::chr7:133512043..133512060,-#_a192a04fae89bf0d59c7c780246e1445 | p@chr7:133512043..133512060, - |
| 4.31e-57 | FFCP PHASE2:Mm9::chr6:41128837..41128859,+#_c4b20c91aab87704c11b43d3a89ab2b4 | p2@Gm5409 |
| 4.31e-57 | FFCP PHASE1:Mm9::chr6:41128837..41128859,+#_c4b20c91aab87704c11b43d3a89ab2b4 | p2@Gm5409 |
| 6.91e-57 | FFCP PHASE1:Mm9::chr16:48772215..48772256,-#_869dbaf3918f3745cce54753cd2a65c7 | p4@Trat1 |
| 6.91e-57 | FFCP PHASE2:Mm9::chr16:48772215..48772256,-#_869dbaf3918f3745cce54753cd2a65c7 | p4@Trat1 |
| 6.93e-57 | FFCP PHASE1:Mm9::chr16:48772258..48772270,-#_d4d3afb061e4cd3858d8e743898f7cb4 | p5@Trat1 |
| 6.93e-57 | FFCP PHASE2:Mm9::chr16:48772258..48772270,-#_d4d3afb061e4cd3858d8e743898f7cb4 | p5@Trat1 |
| 7.43e-57 | FFCP PHASE1:Mm9::chr6:41489240..41489252,+#_a78aa1cc69a7277a0fce544744cd4688 | p@chr6:41489240..41489252, + |
| 7.43e-57 | FFCP PHASE2:Mm9::chr6:41489240..41489252,+#_a78aa1cc69a7277a0fce544744cd4688 | p@chr6:41489240..41489252, + |
| 1.27e-56 | FFCP PHASE1:Mm9::chr6:41484314..41484337,+#_0cda2a5a17abf22b8b1b94059e6b8750 | p1@ENSMUST00000103286, p1@uc009bpg.1, p1@uc009bph.1 |
| 1.27e-56 | FFCP PHASE2:Mm9::chr6:41484314..41484337,+#_0cda2a5a17abf22b8b1b94059e6b8750 | p1@ENSMUST00000103286, p1@uc009bpg.1, p1@uc009bph.1 |
| 1.56e-56 | FFCP PHASE1:Mm9::chr6:41494376..41494389,-#_b8d52d2497f0ce1c9e2fb7254160103c | p@chr6:41494376..41494389, - |
| 1.56e-56 | FFCP PHASE2:Mm9::chr6:41231266..41231303,+#_b8d52d2497f0ce1c9e2fb7254160103c | p1@ENSMUST00000103282 |
| 1.56e-56 | FFCP PHASE2:Mm9::chr6:41494376..41494389,-#_b8d52d2497f0ce1c9e2fb7254160103c | p@chr6:41494376..41494389, - |
| 1.56e-56 | FFCP PHASE1:Mm9::chr6:41231266..41231303,+#_b8d52d2497f0ce1c9e2fb7254160103c | p1@ENSMUST00000103282 |
| 1.67e-56 | FFCP PHASE1:Mm9::chr6:41493801..41493826,+#_c31a059ba4220debd756dd822a8e33a2 | p1@ENSMUST00000103298, p1@uc009bpy.1 |
| 1.67e-56 | FFCP PHASE2:Mm9::chr6:41493801..41493826,+#_c31a059ba4220debd756dd822a8e33a2 | p1@ENSMUST00000103298, p1@uc009bpy.1 |
| 1.92e-56 | FFCP PHASE2:Mm9::chr6:41492643..41492662,+#_facf78968310886ecf01a851c8d15ea2 | p@chr6:41492643..41492662, + |
| 1.92e-56 | FFCP PHASE1:Mm9::chr6:41492643..41492662,+#_facf78968310886ecf01a851c8d15ea2 | p@chr6:41492643..41492662, + |
| 2.05e-56 | FFCP PHASE1:Mm9::chr14:54794540..54794554,+#_19bd1b1139d58bfe8bf1620059eb7ee3 | p@chr14:54794540..54794554, + |
| 2.05e-56 | FFCP PHASE2:Mm9::chr14:54794540..54794554,+#_19bd1b1139d58bfe8bf1620059eb7ee3 | p@chr14:54794540..54794554, + |
| 2.23e-56 | FFCP PHASE1:Mm9::chr6:41491801..41491815,-#_7f29bcecbd6662959ac195940d7a6976 | p@chr6:41491801..41491815, - |
| 2.23e-56 | FFCP PHASE2:Mm9::chr6:41491801..41491815,-#_7f29bcecbd6662959ac195940d7a6976 | p@chr6:41491801..41491815, - |
| 2.23e-56 | FFCP PHASE1:Mm9::chr14:54496363..54496388,+#_7f29bcecbd6662959ac195940d7a6976 | p@chr14:54496363..54496388, + |
| 2.23e-56 | FFCP PHASE2:Mm9::chr14:54496363..54496388,+#_7f29bcecbd6662959ac195940d7a6976 | p@chr14:54496363..54496388, + |
| 2.36e-56 | FFCP PHASE1:Mm9::chr6:41492605..41492621,+#_ba42994c7f962a410bc33809207b312d | p@chr6:41492605..41492621, + |
| 2.36e-56 | FFCP PHASE2:Mm9::chr6:41492605..41492621,+#_ba42994c7f962a410bc33809207b312d | p@chr6:41492605..41492621, + |
| 2.54e-56 | FFCP PHASE1:Mm9::chr11:53448200..53448205,-#_a8538213da0ea56c2bb7e97ebc8c106e | p1@Il13 |
| 2.54e-56 | FFCP PHASE2:Mm9::chr11:53448200..53448205,-#_a8538213da0ea56c2bb7e97ebc8c106e | p1@Il13 |
| 2.88e-56 | FFCP PHASE2:Mm9::chr7:133512914..133512925,-#_214a48fba15d1b292477dc831af2696f | p7@Lat |
| 2.88e-56 | FFCP PHASE1:Mm9::chr7:133512914..133512925,-#_214a48fba15d1b292477dc831af2696f | p7@Lat |
| 3.14e-56 | FFCP PHASE2:Mm9::chr6:41138311..41138333,+#_60dd54098b52d5d1f2ce985e33267a6a | p@chr6:41138311..41138333, + |
| 3.14e-56 | FFCP PHASE1:Mm9::chr6:41138311..41138333,+#_60dd54098b52d5d1f2ce985e33267a6a | p@chr6:41138311..41138333, + |
| 4.06e-56 | FFCP PHASE1:Mm9::chr6:40996879..40996890,+#_773a60c769ee81798dfb5242404cdda3 | p5@uc009bnp.1, p5@uc012eki.1 |
| 4.06e-56 | FFCP PHASE2:Mm9::chr6:40996879..40996890,+#_773a60c769ee81798dfb5242404cdda3 | p5@uc009bnp.1, p5@uc012eki.1 |
| 4.76e-56 | FFCP PHASE1:Mm9::chr6:41483146..41483158,+#_0b3cccf45f399ccdf1c0ab87637c9d2f | p6@uc009bpa.1 |
| 4.76e-56 | FFCP PHASE2:Mm9::chr7:133512935..133512936,-#_0b3cccf45f399ccdf1c0ab87637c9d2f | p8@Lat |
| 4.76e-56 | FFCP PHASE1:Mm9::chr7:133512935..133512936,-#_0b3cccf45f399ccdf1c0ab87637c9d2f | p8@Lat |
| 4.76e-56 | FFCP PHASE2:Mm9::chr6:41483146..41483158,+#_0b3cccf45f399ccdf1c0ab87637c9d2f | p6@uc009bpa.1 |
| 4.76e-56 | FFCP PHASE2:Mm9::chr4:125978325..125978339,-#_0b3cccf45f399ccdf1c0ab87637c9d2f | p@chr4:125978325..125978339, - |
| 4.76e-56 | FFCP PHASE1:Mm9::chr4:125978325..125978339,-#_0b3cccf45f399ccdf1c0ab87637c9d2f | p@chr4:125978325..125978339, - |
| 3.9e-55 | FFCP PHASE2:Mm9::chr19:10904535..10904553,-#_9efc2e8faf195de2be4e5b1ffd4f9bca | p2@Cd6 |
| 3.9e-55 | FFCP PHASE1:Mm9::chr19:10904535..10904553,-#_9efc2e8faf195de2be4e5b1ffd4f9bca | p2@Cd6 |
| 4.2e-55 | FFCP PHASE2:Mm9::chr11:52075039..52075066,+#_30712aeb888a399c934429e8850aaacd | p@chr11:52075039..52075066, + |
| 4.2e-55 | FFCP PHASE1:Mm9::chr11:52075039..52075066,+#_30712aeb888a399c934429e8850aaacd | p@chr11:52075039..52075066, + |
