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|has_quality=
|has_quality=
|id=FF:10823-111C4
|id=FF:10823-111C4
|is_a=EFO:0002091;;FF:0000003;;FF:0000210;;FF:0102062
|is_a=EFO:0002091;;FF:0000210;;FF:0102062
|is_obsolete=
|name=B lymphoblastoid cell line: GM12878 ENCODE, biol_rep3
|name=B lymphoblastoid cell line: GM12878 ENCODE, biol_rep3
|namespace=FANTOM5
|namespace=FANTOM5
Line 77: Line 78:
|sample_tissue=blood
|sample_tissue=blood
|top_motifs=POU2F1..3:2.37041826617;POU5F1:2.19357996837;HOXA9_MEIS1:1.9820005443;DMAP1_NCOR{1,2}_SMARC:1.93753310364;NFKB1_REL_RELA:1.88454308597;PAX6:1.83815824765;E2F1..5:1.66746562237;NFY{A,B,C}:1.61773653537;PDX1:1.61324370331;MYB:1.60991349116;IRF7:1.57365992701;ELF1,2,4:1.5678364964;IRF1,2:1.51029513615;ELK1,4_GABP{A,B1}:1.50927736904;AIRE:1.49872807127;NKX6-1,2:1.40257422802;PITX1..3:1.34016609735;TOPORS:1.27979895404;SPI1:1.09819733832;YY1:1.09624363262;VSX1,2:1.09189264097;HIF1A:1.00233337086;RUNX1..3:0.958333536542;FOXA2:0.938267184563;CDX1,2,4:0.932634597613;NRF1:0.917827322361;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.874782217273;PAX3,7:0.867746317015;PAX8:0.834739262651;ZBTB16:0.747432493176;SPIB:0.743488815208;ZNF143:0.740075913508;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.731695537187;POU1F1:0.679921587167;RBPJ:0.675027664415;AHR_ARNT_ARNT2:0.645625869143;ETS1,2:0.643138666976;OCT4_SOX2{dimer}:0.616760528987;MYOD1:0.564347942058;EVI1:0.517866932713;FOXP3:0.51314630871;BREu{core}:0.483195567593;HNF4A_NR2F1,2:0.481010213497;LMO2:0.45816833409;POU3F1..4:0.451495795201;SNAI1..3:0.445885606129;NR5A1,2:0.441842885738;GFI1:0.425449336341;FOXP1:0.420256678772;SPZ1:0.416396655147;NKX2-2,8:0.413254415911;ZNF384:0.398427782303;ZEB1:0.393141169649;CUX2:0.367008262589;ESRRA:0.34488416334;RORA:0.341468289947;PBX1:0.327464552073;HNF1A:0.318475029335;ARID5B:0.299849604422;FOXN1:0.283588409682;CDC5L:0.219548502348;HSF1,2:0.217125661908;NANOG{mouse}:0.212561126276;GATA6:0.185705424925;STAT1,3:0.181699498951;RFX2..5_RFXANK_RFXAP:0.181529364036;ALX4:0.175426672194;FOX{F1,F2,J1}:0.172798725348;SOX{8,9,10}:0.156916122192;ATF5_CREB3:0.11407071491;TGIF1:0.0970735125656;ESR1:0.0885747640974;CRX:0.0790686360018;IKZF2:0.078620757849;PRRX1,2:0.0757602491704;LHX3,4:0.0731297292607;TFDP1:0.0592301017446;RXRA_VDR{dimer}:0.0524905420829;PAX2:0.0243553982515;NKX3-2:-0.00946612243698;HES1:-0.0103882197375;TP53:-0.0248525305369;CREB1:-0.0915954864285;PRDM1:-0.112168379044;bHLH_family:-0.141380649767;NKX2-3_NKX2-5:-0.145715604126;FOXQ1:-0.146672303626;EBF1:-0.152619767882;SOX5:-0.171044940095;NR1H4:-0.171457310599;PAX4:-0.202124160018;NFE2:-0.229810458963;ATF4:-0.230366473365;DBP:-0.237831449627;TLX2:-0.241852673121;MEF2{A,B,C,D}:-0.249252057959;LEF1_TCF7_TCF7L1,2:-0.278211047761;BPTF:-0.296763365785;HAND1,2:-0.304390242869;SRF:-0.334628178397;EP300:-0.390234042756;ALX1:-0.391391531104;GATA4:-0.413959866104;HOX{A5,B5}:-0.418150119657;ADNP_IRX_SIX_ZHX:-0.43834722201;HBP1_HMGB_SSRP1_UBTF:-0.442831407362;HOX{A4,D4}:-0.446136280294;NFATC1..3:-0.469194168639;FOS_FOS{B,L1}_JUN{B,D}:-0.47580072585;RXR{A,B,G}:-0.487865268285;TEF:-0.493257045261;AR:-0.505828926121;GFI1B:-0.511146385668;SOX17:-0.519680026523;NR6A1:-0.550791796542;SOX2:-0.560507912013;KLF4:-0.584431356653;FOSL2:-0.58658511533;NKX2-1,4:-0.592512316824;ONECUT1,2:-0.603083014679;BACH2:-0.606519400499;HMGA1,2:-0.618924271622;ZFP161:-0.639488788223;UFEwm:-0.640450560739;EN1,2:-0.64289009084;STAT2,4,6:-0.657564393;IKZF1:-0.682032376795;RREB1:-0.685940158176;CEBPA,B_DDIT3:-0.688195997655;NFIL3:-0.699361114087;GLI1..3:-0.734260517816;MZF1:-0.739685154939;TFAP4:-0.74098921276;SMAD1..7,9:-0.754455638358;MYBL2:-0.766991593172;STAT5{A,B}:-0.782479505782;GCM1,2:-0.784829374914;HOX{A6,A7,B6,B7}:-0.803687033526;NKX3-1:-0.818993250626;PPARG:-0.82056527378;PAX1,9:-0.826713516328;SREBF1,2:-0.836657185559;ATF2:-0.843870436334;HLF:-0.846440132248;NHLH1,2:-0.861330245316;TAL1_TCF{3,4,12}:-0.914148726196;ZNF148:-0.923810945583;MYFfamily:-0.924009766946;FOXD3:-0.928959043952;ZNF423:-0.957188083363;MTF1:-0.963145026819;EGR1..3:-0.977760003256;ZIC1..3:-0.992846577728;RFX1:-1.01291870628;XCPE1{core}:-1.03851626774;FOXO1,3,4:-1.0471811307;MTE{core}:-1.06487027425;TBP:-1.08372042353;HIC1:-1.08986749596;JUN:-1.1058763335;T:-1.12366012248;REST:-1.13330000012;NFIX:-1.14587520621;PAX5:-1.15753204538;GTF2I:-1.18459570894;NFE2L2:-1.21223264823;XBP1:-1.23331964364;NFE2L1:-1.24787716658;MAFB:-1.27537639605;MED-1{core}:-1.2857994497;FOXM1:-1.2922012403;NANOG:-1.30990483605;TFAP2{A,C}:-1.32150589921;PATZ1:-1.34822630122;TFCP2:-1.35779454385;ATF6:-1.37025780055;GTF2A1,2:-1.38000243687;HMX1:-1.388945926;GZF1:-1.43654812128;TBX4,5:-1.46044857331;MAZ:-1.47340187805;ZNF238:-1.47592322241;TLX1..3_NFIC{dimer}:-1.48167347747;ZBTB6:-1.63966328517;POU6F1:-1.67507898292;TEAD1:-1.68001545219;NR3C1:-1.68460187491;FOX{D1,D2}:-1.72871992526;SP1:-1.81297752058;TFAP2B:-1.90774420056;FOX{I1,J2}:-2.13253849766;FOXL1:-2.4673002322
|top_motifs=POU2F1..3:2.37041826617;POU5F1:2.19357996837;HOXA9_MEIS1:1.9820005443;DMAP1_NCOR{1,2}_SMARC:1.93753310364;NFKB1_REL_RELA:1.88454308597;PAX6:1.83815824765;E2F1..5:1.66746562237;NFY{A,B,C}:1.61773653537;PDX1:1.61324370331;MYB:1.60991349116;IRF7:1.57365992701;ELF1,2,4:1.5678364964;IRF1,2:1.51029513615;ELK1,4_GABP{A,B1}:1.50927736904;AIRE:1.49872807127;NKX6-1,2:1.40257422802;PITX1..3:1.34016609735;TOPORS:1.27979895404;SPI1:1.09819733832;YY1:1.09624363262;VSX1,2:1.09189264097;HIF1A:1.00233337086;RUNX1..3:0.958333536542;FOXA2:0.938267184563;CDX1,2,4:0.932634597613;NRF1:0.917827322361;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.874782217273;PAX3,7:0.867746317015;PAX8:0.834739262651;ZBTB16:0.747432493176;SPIB:0.743488815208;ZNF143:0.740075913508;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.731695537187;POU1F1:0.679921587167;RBPJ:0.675027664415;AHR_ARNT_ARNT2:0.645625869143;ETS1,2:0.643138666976;OCT4_SOX2{dimer}:0.616760528987;MYOD1:0.564347942058;EVI1:0.517866932713;FOXP3:0.51314630871;BREu{core}:0.483195567593;HNF4A_NR2F1,2:0.481010213497;LMO2:0.45816833409;POU3F1..4:0.451495795201;SNAI1..3:0.445885606129;NR5A1,2:0.441842885738;GFI1:0.425449336341;FOXP1:0.420256678772;SPZ1:0.416396655147;NKX2-2,8:0.413254415911;ZNF384:0.398427782303;ZEB1:0.393141169649;CUX2:0.367008262589;ESRRA:0.34488416334;RORA:0.341468289947;PBX1:0.327464552073;HNF1A:0.318475029335;ARID5B:0.299849604422;FOXN1:0.283588409682;CDC5L:0.219548502348;HSF1,2:0.217125661908;NANOG{mouse}:0.212561126276;GATA6:0.185705424925;STAT1,3:0.181699498951;RFX2..5_RFXANK_RFXAP:0.181529364036;ALX4:0.175426672194;FOX{F1,F2,J1}:0.172798725348;SOX{8,9,10}:0.156916122192;ATF5_CREB3:0.11407071491;TGIF1:0.0970735125656;ESR1:0.0885747640974;CRX:0.0790686360018;IKZF2:0.078620757849;PRRX1,2:0.0757602491704;LHX3,4:0.0731297292607;TFDP1:0.0592301017446;RXRA_VDR{dimer}:0.0524905420829;PAX2:0.0243553982515;NKX3-2:-0.00946612243698;HES1:-0.0103882197375;TP53:-0.0248525305369;CREB1:-0.0915954864285;PRDM1:-0.112168379044;bHLH_family:-0.141380649767;NKX2-3_NKX2-5:-0.145715604126;FOXQ1:-0.146672303626;EBF1:-0.152619767882;SOX5:-0.171044940095;NR1H4:-0.171457310599;PAX4:-0.202124160018;NFE2:-0.229810458963;ATF4:-0.230366473365;DBP:-0.237831449627;TLX2:-0.241852673121;MEF2{A,B,C,D}:-0.249252057959;LEF1_TCF7_TCF7L1,2:-0.278211047761;BPTF:-0.296763365785;HAND1,2:-0.304390242869;SRF:-0.334628178397;EP300:-0.390234042756;ALX1:-0.391391531104;GATA4:-0.413959866104;HOX{A5,B5}:-0.418150119657;ADNP_IRX_SIX_ZHX:-0.43834722201;HBP1_HMGB_SSRP1_UBTF:-0.442831407362;HOX{A4,D4}:-0.446136280294;NFATC1..3:-0.469194168639;FOS_FOS{B,L1}_JUN{B,D}:-0.47580072585;RXR{A,B,G}:-0.487865268285;TEF:-0.493257045261;AR:-0.505828926121;GFI1B:-0.511146385668;SOX17:-0.519680026523;NR6A1:-0.550791796542;SOX2:-0.560507912013;KLF4:-0.584431356653;FOSL2:-0.58658511533;NKX2-1,4:-0.592512316824;ONECUT1,2:-0.603083014679;BACH2:-0.606519400499;HMGA1,2:-0.618924271622;ZFP161:-0.639488788223;UFEwm:-0.640450560739;EN1,2:-0.64289009084;STAT2,4,6:-0.657564393;IKZF1:-0.682032376795;RREB1:-0.685940158176;CEBPA,B_DDIT3:-0.688195997655;NFIL3:-0.699361114087;GLI1..3:-0.734260517816;MZF1:-0.739685154939;TFAP4:-0.74098921276;SMAD1..7,9:-0.754455638358;MYBL2:-0.766991593172;STAT5{A,B}:-0.782479505782;GCM1,2:-0.784829374914;HOX{A6,A7,B6,B7}:-0.803687033526;NKX3-1:-0.818993250626;PPARG:-0.82056527378;PAX1,9:-0.826713516328;SREBF1,2:-0.836657185559;ATF2:-0.843870436334;HLF:-0.846440132248;NHLH1,2:-0.861330245316;TAL1_TCF{3,4,12}:-0.914148726196;ZNF148:-0.923810945583;MYFfamily:-0.924009766946;FOXD3:-0.928959043952;ZNF423:-0.957188083363;MTF1:-0.963145026819;EGR1..3:-0.977760003256;ZIC1..3:-0.992846577728;RFX1:-1.01291870628;XCPE1{core}:-1.03851626774;FOXO1,3,4:-1.0471811307;MTE{core}:-1.06487027425;TBP:-1.08372042353;HIC1:-1.08986749596;JUN:-1.1058763335;T:-1.12366012248;REST:-1.13330000012;NFIX:-1.14587520621;PAX5:-1.15753204538;GTF2I:-1.18459570894;NFE2L2:-1.21223264823;XBP1:-1.23331964364;NFE2L1:-1.24787716658;MAFB:-1.27537639605;MED-1{core}:-1.2857994497;FOXM1:-1.2922012403;NANOG:-1.30990483605;TFAP2{A,C}:-1.32150589921;PATZ1:-1.34822630122;TFCP2:-1.35779454385;ATF6:-1.37025780055;GTF2A1,2:-1.38000243687;HMX1:-1.388945926;GZF1:-1.43654812128;TBX4,5:-1.46044857331;MAZ:-1.47340187805;ZNF238:-1.47592322241;TLX1..3_NFIC{dimer}:-1.48167347747;ZBTB6:-1.63966328517;POU6F1:-1.67507898292;TEAD1:-1.68001545219;NR3C1:-1.68460187491;FOX{D1,D2}:-1.72871992526;SP1:-1.81297752058;TFAP2B:-1.90774420056;FOX{I1,J2}:-2.13253849766;FOXL1:-2.4673002322
|xref=
}}
}}

Revision as of 19:21, 27 June 2012


Name:B lymphoblastoid cell line: GM12878 ENCODE, biol_rep3
Species:
Library ID:{{{library_id}}}
Sample type:{{{sample_category}}}
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexfemale
ageNA
cell typeb cell
cell lineGM12878
companyNA
collaborationCarrie Davis (Cold spring Harbor Laboratories)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000034 (stem cell)
0002032 (hematopoietic oligopotent progenitor cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000945 (lymphocyte of B lineage)
0000134 (mesenchymal cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000838 (lymphoid lineage restricted progenitor cell)
0002031 (hematopoietic lineage restricted progenitor cell)
0000037 (hematopoietic stem cell)
0000566 (angioblastic mesenchymal cell)
0000837 (hematopoietic multipotent progenitor cell)
0000826 (pro-B cell)
0000051 (common lymphoid progenitor)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
NA

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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