FF:10553-107I4: Difference between revisions

Revision as of 19:20, 9 July 2012

Name:	cervical cancer cell line:ME-180
Species:	Human (Homo sapiens)
Library ID:	{{{library_id}}}
Sample type:	{{{sample_category}}}
Genomic View:	UCSC
CAGEd-oPOSSUM:	link

Additional information

Sample information

strain	NA
tissue	cervix
dev stage	NA
sex	female
age	66
cell type	unclassifiable
cell line	ME-180
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

Download raw sequence, BAM & CTSS

Hg19

BAM	CTSS
[{{{hg19bam}}} download]	[{{{hg19ctss}}} donwload]

Hg38

BAM	CTSS
[{{{hg38bam}}} download]	[{{{hg38ctss}}} donwload]

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0567
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.256
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.00561
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.00911
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0502
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.163
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0.0782
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.49
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.174
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.809
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.0124
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.123
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0.975
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.152
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.2
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0.107
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data no result for this sample

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11289

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1.29618e-4
MA0003.1	MA0003.1	0.095
MA0004.1	MA0004.1	0.0484
MA0006.1	MA0006.1	0.193
MA0007.1	MA0007.1	0.243
MA0009.1	MA0009.1	0.129
MA0014.1	MA0014.1	0.127
MA0017.1	MA0017.1	0.00287
MA0018.2	MA0018.2	0.00726
MA0019.1	MA0019.1	0.955
MA0024.1	MA0024.1	6.15038e-4
MA0025.1	MA0025.1	0.108
MA0027.1	MA0027.1	0.77
MA0028.1	MA0028.1	0.198
MA0029.1	MA0029.1	0.269
MA0030.1	MA0030.1	0.0516
MA0031.1	MA0031.1	0.0512
MA0035.2	MA0035.2	0.722
MA0038.1	MA0038.1	0.0561
MA0039.2	MA0039.2	0.00221
MA0040.1	MA0040.1	0.253
MA0041.1	MA0041.1	0.54
MA0042.1	MA0042.1	0.754
MA0043.1	MA0043.1	0.0308
MA0046.1	MA0046.1	0.979
MA0047.2	MA0047.2	0.5
MA0048.1	MA0048.1	0.937
MA0050.1	MA0050.1	0.0605
MA0051.1	MA0051.1	0.329
MA0052.1	MA0052.1	0.505
MA0055.1	MA0055.1	0.218
MA0057.1	MA0057.1	0.202
MA0058.1	MA0058.1	0.0172
MA0059.1	MA0059.1	0.0233
MA0060.1	MA0060.1	3.06328e-8
MA0061.1	MA0061.1	0.00276
MA0062.2	MA0062.2	0.602
MA0065.2	MA0065.2	0.0099
MA0066.1	MA0066.1	0.0475
MA0067.1	MA0067.1	0.709
MA0068.1	MA0068.1	0.583
MA0069.1	MA0069.1	0.396
MA0070.1	MA0070.1	0.193
MA0071.1	MA0071.1	0.125
MA0072.1	MA0072.1	0.786
MA0073.1	MA0073.1	0.998
MA0074.1	MA0074.1	0.586
MA0076.1	MA0076.1	0.0832
MA0077.1	MA0077.1	0.703
MA0078.1	MA0078.1	0.199
MA0079.2	MA0079.2	0.321
MA0080.2	MA0080.2	2.12406e-7
MA0081.1	MA0081.1	0.00381
MA0083.1	MA0083.1	0.253
MA0084.1	MA0084.1	0.175
MA0087.1	MA0087.1	0.537
MA0088.1	MA0088.1	0.0496
MA0090.1	MA0090.1	0.0689
MA0091.1	MA0091.1	0.00431
MA0092.1	MA0092.1	0.265
MA0093.1	MA0093.1	0.0682
MA0099.2	MA0099.2	0.781
MA0100.1	MA0100.1	0.735
MA0101.1	MA0101.1	0.0096
MA0102.2	MA0102.2	0.608
MA0103.1	MA0103.1	8.26834e-5
MA0104.2	MA0104.2	0.262
MA0105.1	MA0105.1	3.02901e-6
MA0106.1	MA0106.1	2.05695e-5
MA0107.1	MA0107.1	0.00604
MA0108.2	MA0108.2	0.0015
MA0111.1	MA0111.1	0.979
MA0112.2	MA0112.2	4.41207e-4
MA0113.1	MA0113.1	0.681
MA0114.1	MA0114.1	0.067
MA0115.1	MA0115.1	0.183
MA0116.1	MA0116.1	0.00622
MA0117.1	MA0117.1	0.72
MA0119.1	MA0119.1	0.247
MA0122.1	MA0122.1	0.522
MA0124.1	MA0124.1	0.428
MA0125.1	MA0125.1	5.8062e-5
MA0131.1	MA0131.1	0.271
MA0135.1	MA0135.1	0.188
MA0136.1	MA0136.1	4.00482e-4
MA0137.2	MA0137.2	0.0598
MA0138.2	MA0138.2	0.0927
MA0139.1	MA0139.1	0.583
MA0140.1	MA0140.1	0.9
MA0141.1	MA0141.1	0.107
MA0142.1	MA0142.1	0.898
MA0143.1	MA0143.1	0.417
MA0144.1	MA0144.1	0.153
MA0145.1	MA0145.1	0.568
MA0146.1	MA0146.1	0.115
MA0147.1	MA0147.1	0.213
MA0148.1	MA0148.1	0.112
MA0149.1	MA0149.1	0.238
MA0150.1	MA0150.1	0.0574
MA0152.1	MA0152.1	0.198
MA0153.1	MA0153.1	0.62
MA0154.1	MA0154.1	0.0152
MA0155.1	MA0155.1	0.0515
MA0156.1	MA0156.1	0.0499
MA0157.1	MA0157.1	0.886
MA0159.1	MA0159.1	0.715
MA0160.1	MA0160.1	0.325
MA0162.1	MA0162.1	0.432
MA0163.1	MA0163.1	4.97097e-5
MA0164.1	MA0164.1	0.236
MA0258.1	MA0258.1	0.00409
MA0259.1	MA0259.1	0.778

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11289

Novel motif	Logo	P-value
1	1	0.175
10	10	0.0482
100	100	0.934
101	101	0.765
102	102	0.374
103	103	0.0682
104	104	0.982
105	105	0.45
106	106	0.613
107	107	0.989
108	108	0.847
109	109	0.711
11	11	0.122
110	110	0.134
111	111	0.0269
112	112	0.315
113	113	0.118
114	114	0.018
115	115	0.295
116	116	0.121
117	117	0.153
118	118	0.0522
119	119	0.244
12	12	0.943
120	120	0.691
121	121	0.917
122	122	0.0585
123	123	0.58
124	124	0.211
125	125	0.268
126	126	0.733
127	127	0.266
128	128	0.137
129	129	0.826
13	13	0.721
130	130	0.205
131	131	0.344
132	132	0.237
133	133	0.177
134	134	0.424
135	135	0.215
136	136	0.0278
137	137	0.0753
138	138	0.582
139	139	0.0998
14	14	0.92
140	140	0.311
141	141	0.935
142	142	0.659
143	143	0.0747
144	144	0.13
145	145	0.512
146	146	0.194
147	147	0.875
148	148	0.103
149	149	0.125
15	15	0.123
150	150	0.952
151	151	0.495
152	152	0.793
153	153	0.452
154	154	0.928
155	155	0.581
156	156	0.54
157	157	0.83
158	158	0.287
159	159	0.47
16	16	0.973
160	160	0.142
161	161	0.979
162	162	0.93
163	163	0.601
164	164	0.121
165	165	0.328
166	166	0.203
167	167	0.87
168	168	0.905
169	169	0.112
17	17	0.9
18	18	0.13
19	19	0.0401
2	2	0.918
20	20	0.738
21	21	0.717
22	22	0.214
23	23	0.163
24	24	0.452
25	25	0.767
26	26	0.247
27	27	0.396
28	28	0.316
29	29	0.493
3	3	0.101
30	30	0.158
31	31	0.166
32	32	0.00837
33	33	0.455
34	34	0.0909
35	35	0.0401
36	36	0.068
37	37	0.238
38	38	0.841
39	39	0.909
4	4	0.641
40	40	0.842
41	41	0.275
42	42	0.785
43	43	0.0842
44	44	0.751
45	45	0.718
46	46	0.213
47	47	0.355
48	48	0.463
49	49	0.0579
5	5	0.515
50	50	0.872
51	51	0.185
52	52	0.348
53	53	0.75
54	54	0.604
55	55	0.438
56	56	0.892
57	57	0.885
58	58	0.831
59	59	0.184
6	6	0.755
60	60	0.785
61	61	0.866
62	62	0.25
63	63	0.964
64	64	0.369
65	65	0.223
66	66	0.0252
67	67	0.639
68	68	0.142
69	69	0.468
7	7	0.616
70	70	0.385
71	71	0.314
72	72	0.743
73	73	0.632
74	74	0.00547
75	75	0.596
76	76	0.468
77	77	0.212
78	78	0.239
79	79	0.00944
8	8	0.168
80	80	0.354
81	81	0.14
82	82	0.0103
83	83	0.717
84	84	0.926
85	85	0.161
86	86	0.446
87	87	0.106
88	88	0.875
89	89	0.714
9	9	0.147
90	90	0.239
91	91	0.0798
92	92	0.193
93	93	0.648
94	94	0.00655
95	95	0.172
96	96	0.0308
97	97	0.648
98	98	0.0877
99	99	0.996

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11289

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101967 cervical cancer cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
193 (reproductive organ cancer)
120 (female reproductive organ cancer)
4362 (cervical cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000002 (uterine cervix)
0000995 (uterus)
0003134 (female reproductive organ)
0001560 (neck of organ)
0005156 (reproductive structure)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0003975 (internal female genitalia)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101967 (cervical cancer cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 10: / Line 10: @@
 |def=
 |expression_enrichment_score=chr3:189507432..189507459,+!p1@TP63!2.46!290.42!TP63;;chr11:34642612..34642646,+!p1@EHF!2.25!178.18!EHF;;chr6:1312325..1312340,+!p1@FOXQ1!2.18!238.55!FOXQ1;;chr17:48072574..48072597,-!p1@DLX3!2.14!138.17!DLX3;;chr5:134369879..134369898,-!p2@PITX1!2.14!135.80!PITX1;;chr17:7493405..7493419,-!p1@SOX15!2.11!126.88!SOX15;;chr12:52445218..52445237,+!p1@NR4A1!2.09!1447.22!NR4A1;;chr14:37131058..37131139,+!p1@PAX9!2.06!113.63!PAX9;;chr12:54785054..54785072,-!p4@ZNF385A!2.04!120.88!ZNF385A;;chr1:201979743..201979762,+!p1@ELF3!1.97!91.74!ELF3;;chr5:134369905..134369972,-!p1@PITX1!1.94!129.25!PITX1;;chr17:80797886..80797906,-!p1@ZNF750!1.94!86.44!ZNF750;;chr12:54785074..54785122,-!p2@ZNF385A!1.86!107.50!ZNF385A;;chr1:209979467..209979494,-!p1@IRF6!1.85!77.38!IRF6;;chr17:26833339..26833378,+!p1@FOXN1!1.77!58.42!FOXN1;;chr10:64576105..64576133,-!p1@EGR2!1.76!111.68!EGR2;;chr1:6479968..6479986,-!p1@HES2!1.75!55.77!HES2;;chr9:100615499..100615519,+!p1@FOXE1!1.74!54.10!FOXE1;;chr13:73633131..73633149,+!p1@KLF5!1.71!510.57!KLF5;;chr1:201979703..201979721,+!p2@ELF3!1.67!46.01!ELF3;;chr4:57547454..57547469,-!p1@HOPX!1.67!46.01!HOPX;;chr1:209979411..209979433,-!p2@IRF6!1.65!43.36!IRF6;;chr20:55204351..55204377,+!p1@TFAP2C!1.64!53.68!TFAP2C;;chr2:176969228..176969260,+!p1@HOXD11!1.64!42.66!HOXD11;;chr1:24645921..24645973,+!p2@GRHL3!1.63!41.41!GRHL3;;chr2:176969179..176969226,+!p2@HOXD11!1.62!40.29!HOXD11;;chr1:24645832..24645853,+!p1@GRHL3!1.59!37.64!GRHL3;;chr11:65554528..65554546,+!p1@OVOL1!1.56!35.41!OVOL1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.54!33.32!ZBED1;;chr19:45971246..45971265,+!p1@FOSB!1.51!557.42!FOSB;;chr15:83953397..83953425,-!p1@BNC1!1.48!33.18!BNC1;;chr8:22550982..22550999,-!p1@EGR3!1.45!74.59!EGR3;;chr5:2751762..2751784,-!p1@IRX2!1.45!27.05!IRX2;;chr17:7492684..7492778,-!p2@SOX15!1.44!54.93!SOX15;;chr8:102504651..102504683,+!p1@GRHL2!1.43!26.21!GRHL2;;chr7:96654133..96654150,-!p1@DLX5!1.43!25.79!DLX5;;chr11:34642656..34642667,+!p2@EHF!1.42!25.24!EHF;;chr5:137804484..137804498,+!p2@EGR1!1.41!95.64!EGR1;;chr2:70142232..70142251,+!p1@MXD1!1.40!132.87!MXD1;;chr2:10091815..10091864,+!p1@GRHL1!1.40!31.79!GRHL1;;chr2:172967621..172967637,-!p1@DLX2!1.39!61.35!DLX2;;chr6:126240380..126240430,+!p2@NCOA7!1.38!57.86!NCOA7;;chr20:39317868..39317884,-!p1@MAFB!1.32!229.49!MAFB;;chr11:34645791..34645836,+!p3@EHF!1.32!19.66!EHF;;chr6:126240442..126240459,+!p4@NCOA7!1.31!24.96!NCOA7;;chr12:54332652..54332671,+!p2@HOXC13!1.31!19.24!HOXC13;;chr5:137801160..137801176,+!p1@EGR1!1.30!1817.39!EGR1;;chr11:65554563..65554576,+!p2@OVOL1!1.30!18.96!OVOL1;;chr6:10419768..10419819,-!p6@TFAP2A!1.30!18.82!TFAP2A;;chr6:19837592..19837621,+!p1@ID4!1.29!111.12!ID4;;chr7:101460882..101460923,+!p5@CUX1!1.29!18.68!CUX1;;chr22:19748231..19748317,+!p1@TBX1!1.29!18.68!TBX1;;chr5:174151612..174151633,+!p2@MSX2!1.25!16.87!MSX2;;chr12:53625966..53626012,-!p2@RARG!1.22!41.27!RARG;;chr17:26833250..26833262,+!p2@FOXN1!1.22!15.48!FOXN1;;chr5:174151553..174151610,+!p1@MSX2!1.21!25.10!MSX2;;chr8:10588010..10588030,-!p1@SOX7!1.21!15.34!SOX7;;chr12:54332608..54332636,+!p1@HOXC13!1.20!14.92!HOXC13;;chr3:189507460..189507471,+!p3@TP63!1.19!14.64!TP63;;chr12:54332687..54332701,+!p3@HOXC13!1.17!13.94!HOXC13;;chr6:10415484..10415508,-!p3@TFAP2A!1.15!12.97!TFAP2A;;chr3:193853927..193853944,+!p1@HES1!1.13!404.75!HES1;;chr19:33865009..33865090,+!p3@CEBPG!1.13!16.73!CEBPG;;chr7:27205136..27205164,-!p1@HOXA9!1.13!12.41!HOXA9;;chr9:102584159..102584174,+!p2@NR4A3!1.12!22.03!NR4A3;;chr2:45236540..45236577,-!p1@SIX2!1.12!12.27!SIX2;;chr14:75745523..75745537,+!p1@FOS!1.11!1404.00!FOS;;chr9:110252035..110252057,-!p1@KLF4!1.11!191.01!KLF4;;chr4:57522166..57522260,-!p2@HOPX!1.11!13.66!HOPX;;chr11:129245526..129245553,+!p1@BARX2!1.09!11.43!BARX2;;chr11:2292226..2292270,-!p1@ASCL2!1.09!11.43!ASCL2;;chr1:24646002..24646013,+!p3@GRHL3!1.09!11.29!GRHL3;;chr19:45908292..45908374,-!p1@PPP1R13L!1.08!97.46!PPP1R13L;;chr17:17726907..17726958,-!p2@SREBF1!1.07!67.76!SREBF1;;chr2:157189180..157189290,-!p1@NR4A2!1.07!56.61!NR4A2;;chr20:6748325..6748352,+!p1@BMP2!1.07!15.62!BMP2;;chr6:1389789..1389821,+!p1@FOXF2!1.07!14.92!FOXF2;;chr7:64838786..64838809,+!p2@ZNF92!1.06!60.37!ZNF92;;chr5:137804405..137804444,+!p3@EGR1!1.06!12.69!EGR1;;chr2:176969097..176969109,+!p3@HOXD11!1.06!10.60!HOXD11;;chr5:134369643..134369675,-!p4@PITX1!1.04!10.04!PITX1;;chr2:238592039..238592054,+!p4@LRRFIP1!1.04!9.90!LRRFIP1;;chr16:79634595..79634620,-!p2@MAF!1.03!17.85!MAF;;chrX:107018969..107019024,-!p6@TSC22D3!1.03!13.66!TSC22D3;;chr2:176969124..176969155,+!p5@HOXD11!1.03!9.76!HOXD11;;chr17:46687959..46688007,-!p2@HOXB7!1.02!13.25!HOXB7;;chr1:212782094..212782109,+!p1@ATF3!1.01!258.49!ATF3;;chr6:10415276..10415341,-!p2@TFAP2A!1.00!11.01!TFAP2A;;chr19:12902289..12902307,+!p1@JUNB!0.99!2053.85!JUNB;;chr8:81787006..81787031,-!p2@ZNF704!0.96!8.09!ZNF704;;chr2:172949484..172949522,+!p1@DLX1!0.96!8.09!DLX1;;chr7:27205106..27205134,-!p2@HOXA9!0.95!7.95!HOXA9;;chr19:49139477..49139552,-!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28..40596855,-!p1@ZNF780A!0.23!5.72!ZNF780A;;chr5:76383017..76383068,-!p1@ZBED3!0.23!4.88!ZBED3;;chr14:74353576..74353589,+!p3@ZNF410!0.23!4.46!ZNF410;;chr8:116681221..116681236,-!p3@TRPS1!0.23!3.76!TRPS1;;chr5:43121653..43121678,+!p3@ZNF131!0.23!3.35!ZNF131;;chr1:61548069..61548102,+!p3@NFIA!0.23!2.93!NFIA;;chr12:19671171..19671175,+!p4@AEBP2!0.23!2.79!AEBP2;;chrX:70315688..70315709,+!p1@FOXO4!0.23!2.79!FOXO4;;chr19:21950332..21950356,-!p2@ZNF100!0.23!2.51!ZNF100;;chr20:31350184..31350200,+!p1@DNMT3B!0.23!2.37!DNMT3B;;chr11:67007522..67007533,+!p5@KDM2A!0.23!1.81!KDM2A;;chr15:64752927..64752950,+!p3@ZNF609!0.23!1.53!ZNF609;;chr19:12175504..12175519,+!p2@ZNF844!0.23!1.39!ZNF844;;chr17:46620898..46620927,-!p9@HOXB2!0.23!0.98!HOXB2;;chr2:178128578..178128597,-!p9@NFE2L2!0.23!0.98!NFE2L2;;chr2:119605233..119605245,-!p8@EN1!0.23!0.70!EN1;;chr2:214016899..214016926,-!p10@IKZF2!0.23!0.70!IKZF2;;chr2:42721205..42721307,+!p4@MTA3!0.23!0.70!MTA3;;chr2:70165338..70165355,+!p10@MXD1!0.23!0.70!MXD1;;chr2:70166128..70166141,+!p9@MXD1!0.23!0.70!MXD1;;chr2:70166156..70166179,+!p4@MXD1!0.23!0.70!MXD1;;chr2:70166212..70166223,+!p16@MXD1!0.23!0.70!MXD1;;chr3:169490834..169490863,+!p4@MYNN!0.23!0.70!MYNN;;chr3:69812764..69812775,+!p18@MITF!0.23!0.70!MITF;;chr4:109089966..109089977,-!p15@LEF1!0.23!0.70!LEF1;;chr15:37391614..37391626,-!p18@MEIS2!0.23!0.70!MEIS2;;chr15:67458861..67458879,+!p17@SMAD3!0.23!0.70!SMAD3;;chr17:17721569..17721574,-!p9@SREBF1!0.23!0.70!SREBF1;;chr17:48046642..48046667,+!p3@DLX4!0.23!0.70!DLX4;;chr17:48072063..48072074,-!p5@DLX3!0.23!0.70!DLX3;;chr18:19749504..19749515,+!p5@GATA6!0.23!0.70!GATA6;;chr19:12444399..12444415,-!p5@ZNF563!0.23!0.70!ZNF563;;chrX:24167818..24167825,+!p7@ZFX!0.23!0.70!ZFX;;chr9:129376233..129376251,+!p2@LMX1B!0.23!0.70!LMX1B;;chr4:95174454..95174465,+!p8@SMARCAD1!0.23!0.70!SMARCAD1;;chr6:106546731..106546755,+!p5@PRDM1!0.23!0.70!PRDM1;;chr6:126070748..126070768,+!p2@HEY2!0.23!0.70!HEY2;;chr6:21597687..21597708,+!p14@SOX4!0.23!0.70!SOX4;;chr6:36355431..36355466,-!p1@ETV7!0.23!0.70!ETV7;;chr7:156803329..156803362,-!p1@MNX1!0.23!0.70!MNX1;;chr7:42276771..42276782,-!p4@GLI3!0.23!0.70!GLI3;;chr7:96635178..96635181,+!p1@DLX6!0.23!0.70!DLX6;;chr8:102216978..102217003,-!p4@ZNF706!0.23!0.70!ZNF706;;chr9:1050331..1050363,+!p1@DMRT2!0.23!0.70!DMRT2;;chr9:115819058..115819082,-!p2@ZFP37!0.23!0.70!ZFP37;;chr9:124976328..124976372,-!p2@LHX6!0.23!0.70!LHX6;;chr10:124768217..124768228,-!p2@IKZF5!0.23!0.70!IKZF5;;chr10:126138622..126138638,-!p2@NKX1-2!0.23!0.70!NKX1-2;;chr11:62369084..62369093,-!p9@MTA2!0.23!0.70!MTA2;;chr12:124496534..124496544,+!p6@ZNF664!0.23!0.70!ZNF664;;chr13:37494248..37494260,-!p3@SMAD9!0.23!0.70!SMAD9;;chr13:37494306..37494324,-!p4@SMAD9!0.23!0.70!SMAD9;;chr14:37051768..37051779,-!p4@NKX2-8!0.23!0.70!NKX2-8;;chr14:37131404..37131412,+!p15@PAX9!0.23!0.70!PAX9;;chr14:69260437..69260442,-!p10@ZFP36L1!0.23!0.70!ZFP36L1;;chr19:44860734..44860743,-!p@chr19:44860734..44860743,-!0.23!0.70!ZFP112;;chr1:164528975..164528998,+!p13@PBX1!0.23!0.70!PBX1;;chr1:18957605..18957623,+!p3@PAX7!0.23!0.70!PAX7;;chr1:18957627..18957640,+!p4@PAX7!0.23!0.70!PAX7;;chr1:24645807..24645819,+!p5@GRHL3!0.23!0.70!GRHL3;;chr1:3568889..3568900,+!p7@TP73!0.23!0.70!TP73;;chr1:40367692..40367703,-!p3@MYCL1!0.23!0.70!MYCL1;;chr20:50722202..50722217,-!p7@ZFP64!0.23!0.70!ZFP64;;chr20:51589133..51589159,+!p2@TSHZ2!0.23!0.70!TSHZ2;;chr9:130953817..130953876,-!p1@CIZ1!0.22!90.63!CIZ1;;
+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0010316
 |fonse_cell_line=FF:0101967
 |fonse_cell_line_closure=FF:0101967

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FF:10553-107I4: Difference between revisions

From FANTOM5_SSTAR

Revision as of 19:20, 9 July 2012

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0