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MacroAPE 1083:1-TATKWNTTCMGTGTY: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;1.96;0.056;0.056;53.928!2;51.968;0.056;3.92;0.056!3;0.056;11.928;0.056;43.96!4;8.064;8.008;18.088;21.84!5;30.128;3.92;0.056;21.896!6;18.032;...")
 
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789-110H6;0.326442!10828-111C9;0.925387!10788-110H5;0.477054!10792-110H9;0.217292!10765-110E9;0.59731!10829-111D1;0.77242!10830-111D2;0.114182!10831-111D3;0.165452!10832-111D4;0.660744!10833-111D5;0.397844!10764-110E8;0.335092!10770-110F5;0.273656!10399-106A3;0.122283!10400-106A4;0.273661!10405-106A9;0.308974!10834-111D6;0.383726!10835-111D7;0.00904422!10836-111D8;0.029158!10837-111D9;0.27834!10699-109G6;0.0645853!10802-111A1;0.032221!10796-110I4;0.0052965!10010-101C1;0.197022!10810-111A9;0.461924!10421-106C7;0.590038!10708-109H6;0.0862429!12235-129G3;0.971422!12236-129G4;0.0922189!12237-129G5;0.0209067!10167-103B5;0.0224151!10151-102I7;0.27345!10428-106D5;0.311656!10795-110I3;0.000761846!10805-111A4;0.105584!10052-101G7;0.716852!10189-103D9;0.745428!10589-108D4;0.87167!10425-106D2;0.350959!10427-106D4;0.669253!10702-109G9;0.98394!10432-106D9;0.502162!10496-107C1;0.645549!10718-109I7;0.345714!10011-101C2;0.321133!10053-101G8;0.438179!10686-109F2;0.0741348!10084-102B3;0.146162!10012-101C3;0.448077!10085-102B4;0.331447!10482-107A5;0.494767!10419-106C5;0.256569!10080-102A8;0.0178343!10760-110E4;0.803215!10709-109H7;0.277761!10710-109H8;0.537165!10703-109H1;0.887885!10719-109I8;0.029805!10642-109A3;0.172915!10177-103C6;0.505532!10164-103B2;0.377477!10173-103C2;0.422052!10166-103B4;0.943004!10083-102B2;0.994665!10188-103D8;0.940107!10552-107I3;0.117933!10553-107I4;0.783756!10013-101C4;0.417177!10536-107G5;0.235152!10618-108G6;0.515701!10423-106C9;0.0661343!10785-110H2;0.0842775!12238-129G6;0.0812969!12239-129G7;0.124733!12240-129G8;0.553758!10416-106C2;0.276773!10801-110I9;0.00182292!10766-110F1;0.0317009!10824-111C5;0.104979!10825-111C6;0.272839!10826-111C7;0.140645!10454-106G4;0.176951!10409-106B4;0.621339!10638-108I8;0.0607714!10636-108I6;0.155912!10513-107D9;0.472733!10420-106C6;0.896277!10082-102B1;0.70378!10014-101C5;0.212223!10070-101I7;0.72215!10452-106G2;0.544167!10453-106G3;0.446292!10449-106F8;0.257674!10042-101F6;0.257819!10069-101I6;0.587158!10193-103E4;0.676085!10631-108I1;0.318432!10438-106E6;0.0118341!10488-107B2;0.286426!10196-103E7;0.0800219!10071-101I8;0.671246!10071-101I8;0.932421!10041-101F5;0.735608!10451-106G1;0.16332!10450-106F9;0.45677!10604-108F1;0.833355!10605-108F2;0.929308!10606-108F3;0.859368!10603-108E9;0.804528!10497-107C2;0.428123!10448-106F7;0.440734!10643-109A4;0.0412781!10426-106D3;0.357375!10431-106D8;0.90427!10197-103E8;0.057051!10443-106F2;0.659203!10815-111B5;0.670929!10816-111B6;0.89901!10817-111B7;0.904461!10015-101C6;0.835512!10410-106B5;0.837178!10054-101G9;0.254625!10758-110E2;0.943411!10711-109H9;0.07542!10040-101F4;0.586728!10470-106I2;0.439165!10415-106C1;0.482685!10198-103E9;0.0376918!10614-108G2;0.573448!10612-108F9;0.188903!10549-107H9;0.299121!10615-108G3;0.656069!10487-107B1;0.906919!10433-106E1;0.681968!10688-109F4;0.191204!10444-106F3;0.457671!10444-106F3;0.532656!10485-107A8;0.484117!10413-106B8;0.137462!10175-103C4;0.927864!10161-103A8;0.283999!12131-128D7;0.294045!10624-108H3;0.754173!10712-109I1;0.00219473!10205-103F7;0.298317!10206-103F8;0.729792!10207-103F9;0.427738!10050-101G5;0.484359!10051-101G6;0.0381542!10016-101C7;0.324029!10046-101G1;0.499278!10778-110G4;0.0635994!10633-108I3;0.668086!10818-111B8;0.539823!10819-111B9;0.913633!10820-111C1;0.940108!10484-107A7;0.98122!10808-111A7;0.059747!10169-103B7;0.190795!10153-102I9;0.245926!13425-144D5;0.346348!13433-144E4;0.346873!13437-144E8;0.418074!11904-125F5;0.650659!11905-125F6;0.146004!10039-101F3;0.286408!10791-110H8;0.474914!10017-101C8;0.297401!10045-101F9;0.485936!10509-107D5;0.80866!10839-111E2;0.583447!10692-109F8;0.841706!10079-102A7;0.752926!10078-102A6;0.357703!10721-110A1;0.521789!10569-108B2;0.372369!10570-108B3;0.370027!10571-108B4;0.884017!10647-109A8;0.406862!10752-110D5;0.169522!10782-110G8;0.724485!10726-110A6;0.175692!10018-101C9;0.603354!10086-102B5;0.588833!10182-103D2;0.63796!10165-103B3;0.108428!10499-107C4;0.281538!10408-106B3;0.0378441!10019-101D1;0.154736!10068-101I5;0.0472544!10075-102A3;0.841929!10077-102A5;0.373309!10727-110A7;0.581912!10775-110G1;0.639794!10412-106B7;0.551216!12231-129F8;0.343761!12232-129F9;0.601901!12233-129G1;0.405917!12234-129G2;0.503639!10414-106B9;0.487498!10170-103B8;0.334245!10183-103D3;0.365143!10150-102I6;0.392252!10174-103C3;0.546596!10155-103A2;0.230168!10038-101F2;0.374275!10838-111E1;0.319879!10759-110E3;0.958565!10514-107E1;0.0457033!10465-106H6;0.0959505!10691-109F7;0.0438898!10843-111E6;0.0281523!10844-111E7;0.492964!11747-123G1;0.73478!11748-123G2;0.442581!11749-123G3;0.816679!11750-123G4;0.171699!11751-123G5;0.364924!11840-124H4;0.196596!11752-123G6;0.476837!11753-123G7;0.20787!11754-123G8;0.226343!11755-123G9;0.823593!11756-123H1;0.436663!11833-124G6;0.286742!11760-123H5;0.0652648!11836-124G9;0.3833!11758-123H3;0.553929!11835-124G8;0.328722!11762-123H7;0.880618!11838-124H2;0.553506!11757-123H2;0.33185!11759-123H4;0.0813795!11761-123H6;0.501484!11842-124H6;0.328356!11837-124H1;0.144559!10568-108B1;0.497131!13230-141I8;0.0655359!13231-141I9;0.67299!10696-109G3;0.722704!10493-107B7;0.216737!10494-107B8;0.133053!10850-111F4;0.962727!10851-111F5;0.372637!10852-111F6;0.0351688!10853-111F7;0.0414779!10854-111F8;0.14129!10855-111F9;0.00671611!10856-111G1;0.631179!10847-111F1;0.457052!10846-111E9;0.00257922!10848-111F2;0.145476!10845-111E8;0.282588!10857-111G2;0.450708!10858-111G3;0.352774!10156-103A3;0.726445!11901-125F2;0.590489!11902-125F3;0.601787!11903-125F4;0.307219!10689-109F5;0.776487!10648-109A9;0.969404!10784-110H1;0.549368!10744-110C6;0.796388!10772-110F7;0.827576!10474-106I6;0.487705!10600-108E6;0.827084!10684-109E9;0.915195!12226-129F3;0.944132!12227-129F4;0.396005!10508-107D4;0.138002!10539-107G8;0.229756!10607-108F4;0.982676!10555-107I6;0.920356!10774-110F9;0.301274!10637-108I7;0.360889!10663-109C6;0.507183!10728-110A8;0.31253!10729-110A9;0.263732!10430-106D7;0.544262!10730-110B1;0.428141!10813-111B3;0.687365!10812-111B2;0.937386!10037-101F1;0.934219!10172-103C1;0.404453!10163-103B1;0.827509!10076-102A4;0.56902!10073-102A1;0.59701!10036-101E9;0.713573!10195-103E6;0.461084!10277-104E7;0.481751!10434-106E2;0.809451!10550-107I1;0.102555!10545-107H5;0.647909!10544-107H4;0.368612!10704-109H2;0.704153!10510-107D6;0.085229!10558-107I9;0.337513!10020-101D2;0.889688!10732-110B3;0.470385!10049-101G4;0.045777!10698-109G5;0.824783!10437-106E5;0.196892!10417-106C3;0.165886!10035-101E8;0.462992!10171-103B9;0.448555!10157-103A4;0.407697!10034-101E7;0.609026!10072-101I9;0.484442!10199-103F1;0.577045!10200-103F2;0.00505841!10697-109G4;0.693896!10723-110A3;0.705756!10179-103C8;0.0581077!10160-103A7;0.209039!10180-103C9;0.623939!10162-103A9;0.255006!10021-101D3;0.326311!10840-111E3;0.938645!10706-109H4;0.939294!10033-101E6;0.302249!10032-101E5;0.211297!10490-107B4;0.492256!10439-106E7;0.177625!10022-101D4;0.992371!10176-103C5;0.601924!10469-106I1;0.171489!10067-101I4;0.592892!10411-106B6;0.880876!10471-106I3;0.76762!10030-101E3;0.0665814!10475-106I7;0.611892!10787-110H4;0.499129!10477-106I9;0.514347!10695-109G2;0.987264!11771-123I7;0.712403!11772-123I8;0.408183!11773-123I9;0.309167!10093-102C3;0.820655!10442-106F1;0.116328!10442-106F1;0.0145839!10201-103F3;0.012903!10639-108I9;0.878856!11843-124H7;0.0819683!11841-124H5;0.564621!10693-109F9;0.595992!10436-106E4;0.462754!10483-107A6;0.525069!10282-104F3;0.6198!10023-101D5;0.610082!10066-101I3;0.373497!10065-101I2;0.734278!10800-110I8;0.0932398!10610-108F7;0.491684!10841-111E4;0.178536!10541-107H1;0.243503!10842-111E5;0.983561!10562-108A4;0.808266!10024-101D6;0.393803!10064-101I1;0.891812!10609-108F6;0.619979!10048-101G3;0.833302!10781-110G7;0.98429!10181-103D1;0.971819!10159-103A6;0.405224!10056-101H2;0.602354!10737-110B8;0.379122!10025-101D7;0.540524!10044-101F8;0.456699!10424-106D1;0.777017!10463-106H4;0.739037!10616-108G4;0.838776!10486-107A9;0.150315!10062-101H8;0.756827!10202-103F4;0.39458!10158-103A5;0.186272!10441-106E9;0.505162!10031-101E4;0.928105!10063-101H9;0.445368!10063-101H9;0.699433!11763-123H8;0.611905!11765-123I1;0.268564!11768-123I4;0.880234!10807-111A6;0.322804!10790-110H7;0.290781!10798-110I6;0.936365!10786-110H3;0.458578!10591-108D6;0.632526!10593-108D8;0.689012!10590-108D5;0.76581!10026-101D8;0.362752!10096-102C6;0.458861!10168-103B6;0.698416!10154-103A1;0.63436!10209-103G2;0.538831!10061-101H7;0.610015!10027-101D9;0.737039!10043-101F7;0.838821!10783-110G9;0.934417!10028-101E1;0.586241!10060-101H6;0.223738!10203-103F5;0.56504!10059-101H5;0.896596!10047-101G2;0.604273!10029-101E2;0.941467!10058-101H4;0.382837!10418-106C4;0.435808!10492-107B6;0.154368!10694-109G1;0.702518!10797-110I5;0.456184!10057-101H3;0.832523!10100-102D1;0.450837!10055-101H1;0.919265!10204-103F6;0.736713!10191-103E2;0.486535!10563-108A5;0.754013
|name=1-TATKWNTTCMGTGTY,BestGuess:PB0012.1_Elf3_1(0.645092744449619),T:56.0(2.15%),B:42.5(0.09%),P:1e-44
|name=1-TATKWNTTCMGTGTY,BestGuess:PB0012.1_Elf3_1(0.645092744449619),T:56.0(2.15%),B:42.5(0.09%),P:1e-44
|tomtom_result=HAL9#MA0311.1;-6;0.00108312;0.515564;0.770623;5;TATTAATTCCGTGTT;TTCCG;-!CEP3#MA0282.1;-5;0.00194719;0.926864;0.770623;8;TATTAATTCCGTGTT;TTTCCGAG;-!STB4#MA0391.1;-6;0.00245146;1.1669;0.770623;7;TATTAATTCCGTGTT;TTCCGAG;-!RGT1#MA0367.1;-1;0.00323791;1.54125;0.770623;11;TATTAATTCCGTGTT;AATTTTTCCGG;+!SFL1#MA0377.1;3;0.00570284;2.71455;0.97268;15;TATTAATTCCGTGTT;TTTTATTTCTTCTATTCTCTA;-!YKL222C#MA0428.1;-4;0.00655815;3.12168;0.97268;9;TATTAATTCCGTGTT;ATTTCCGTT;-!YRR1#MA0439.1;-1;0.00800803;3.81182;0.97268;11;TATTAATTCCGTGTT;CTTATCTCCGC;+!ELK1#MA0028.1;-5;0.00817378;3.89072;0.97268;10;TATTAATTCCGTGTT;CTTCCGGCTC;-!FOXL1#MA0033.1;0;0.0093962;4.47259;0.993909;8;TATTAATTCCGTGTT;TATGTATA;-!YRM1#MA0438.1;-4;0.0111212;5.29368;0.99742;8;TATTAATTCCGTGTT;ATTTCCGT;-!SUT2#MA0400.1;-1;0.0115248;5.48581;0.99742;14;TATTAATTCCGTGTT;AAATTTTCGGAGTTTATCAT;-!USV1#MA0413.1;0;0.014189;6.75397;1;15;TATTAATTCCGTGTT;CACAAATTCAGGGGGAATTT;-!bap#MA0211.1;-6;0.0145688;6.93476;1;7;TATTAATTCCGTGTT;TTAAGTG;+!TBP#MA0386.1;6;0.0147332;7.01301;1;15;TATTAATTCCGTGTT;ATCGAATATATATATCTAGTC;-!LYS14#MA0325.1;-4;0.0191395;9.11039;1;8;TATTAATTCCGTGTT;AATTCCGG;-!SPI1#MA0080.1;-5;0.0205959;9.80364;1;6;TATTAATTCCGTGTT;CTTCCG;-
}}
}}

Latest revision as of 12:00, 7 September 2012

Full Name: 1-TATKWNTTCMGTGTY,BestGuess:PB0012.1_Elf3_1(0.645092744449619),T:56.0(2.15%),B:42.5(0.09%),P:1e-44

Motif matrix
POACGT
11.960.0560.05653.928
251.9680.0563.920.056
30.05611.9280.05643.96
48.0648.00818.08821.84
530.1283.920.05621.896
618.03211.92814.012.04
70.0565.9360.05649.952
89.9120.0560.05645.976
91.9648.0480.0565.936
1024.13627.8880.0563.92
110.0560.05651.9123.976
1216.0160.0566.04833.88
135.9360.05649.9520.056
141.9040.0560.05653.984
1511.87213.8889.91220.272

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
HAL9#MA0311.1-60.001083120.5155640.7706235TATTAATTCCGTGTTTTCCG-
CEP3#MA0282.1-50.001947190.9268640.7706238TATTAATTCCGTGTTTTTCCGAG-
STB4#MA0391.1-60.002451461.16690.7706237TATTAATTCCGTGTTTTCCGAG-
RGT1#MA0367.1-10.003237911.541250.77062311TATTAATTCCGTGTTAATTTTTCCGG+
SFL1#MA0377.130.005702842.714550.9726815TATTAATTCCGTGTTTTTTATTTCTTCTATTCTCTA-
YKL222C#MA0428.1-40.006558153.121680.972689TATTAATTCCGTGTTATTTCCGTT-
YRR1#MA0439.1-10.008008033.811820.9726811TATTAATTCCGTGTTCTTATCTCCGC+
ELK1#MA0028.1-50.008173783.890720.9726810TATTAATTCCGTGTTCTTCCGGCTC-
FOXL1#MA0033.100.00939624.472590.9939098TATTAATTCCGTGTTTATGTATA-
YRM1#MA0438.1-40.01112125.293680.997428TATTAATTCCGTGTTATTTCCGT-
SUT2#MA0400.1-10.01152485.485810.9974214TATTAATTCCGTGTTAAATTTTCGGAGTTTATCAT-
USV1#MA0413.100.0141896.75397115TATTAATTCCGTGTTCACAAATTCAGGGGGAATTT-
bap#MA0211.1-60.01456886.9347617TATTAATTCCGTGTTTTAAGTG+
TBP#MA0386.160.01473327.01301115TATTAATTCCGTGTTATCGAATATATATATCTAGTC-
LYS14#MA0325.1-40.01913959.1103918TATTAATTCCGTGTTAATTCCGG-
SPI1#MA0080.1-50.02059599.8036416TATTAATTCCGTGTTCTTCCG-
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