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MacroAPE 1083:RXR(A,B,G): Difference between revisions

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|PWM=null
|PWM=null
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!10827-111C8;0.649714!10789-110H6;0.899206!10828-111C9;0.276936!10788-110H5;0.467619!10792-110H9;0.642397!10765-110E9;0.355618!10829-111D1;0.960678!10830-111D2;0.9766!10831-111D3;0.974825!10832-111D4;0.946146!10833-111D5;0.995604!10764-110E8;0.964579!10770-110F5;0.676166!10399-106A3;0.606824!10400-106A4;0.698722!10405-106A9;0.627266!10834-111D6;0.827714!10835-111D7;0.88541!10836-111D8;0.414644!10837-111D9;0.647466!10699-109G6;0.92457!10802-111A1;0.711109!10796-110I4;0.954451!10010-101C1;0.209743!10810-111A9;0.584676!10421-106C7;0.463833!10708-109H6;0.633238!12235-129G3;0.585057!12236-129G4;0.00792244!12237-129G5;0.0121539!10167-103B5;0.0155634!10151-102I7;0.407688!10428-106D5;0.295884!10795-110I3;0.336861!10805-111A4;0.652535!10052-101G7;0.505033!10189-103D9;0.834333!10589-108D4;0.971253!10425-106D2;0.825993!10427-106D4;0.0081221!10702-109G9;0.657472!10432-106D9;0.36425!10496-107C1;0.157925!10718-109I7;0.435723!10011-101C2;0.638691!10053-101G8;0.956241!10686-109F2;0.0223017!10084-102B3;0.432401!10012-101C3;0.704288!10085-102B4;0.407877!10482-107A5;0.211268!10419-106C5;0.388667!10080-102A8;0.139264!10760-110E4;0.80977!10709-109H7;0.12647!10710-109H8;0.798453!10703-109H1;0.361879!10719-109I8;0.351491!10642-109A3;0.779241!10177-103C6;0.385624!10164-103B2;0.751642!10173-103C2;0.438033!10166-103B4;0.302994!10083-102B2;0.0954145!10188-103D8;0.280055!10552-107I3;0.331155!10553-107I4;0.754735!10013-101C4;0.00388727!10536-107G5;0.977905!10618-108G6;0.613229!10423-106C9;0.584726!10785-110H2;0.10685!12238-129G6;0.860378!12239-129G7;0.162406!12240-129G8;0.661273!10416-106C2;0.350826!10801-110I9;0.888115!10766-110F1;0.894647!10824-111C5;0.936027!10825-111C6;0.866314!10826-111C7;0.853909!10454-106G4;0.798021!10409-106B4;0.644011!10638-108I8;0.805336!10636-108I6;0.99842!10513-107D9;0.299869!10420-106C6;0.415608!10082-102B1;0.558978!10014-101C5;0.940761!10070-101I7;0.773294!10452-106G2;0.744638!10453-106G3;0.936361!10449-106F8;0.953211!10042-101F6;0.93343!10069-101I6;0.715033!10193-103E4;0.310691!10631-108I1;0.764473!10438-106E6;0.62477!10488-107B2;0.20346!10196-103E7;0.959664!10071-101I8;0.788!10071-101I8;0.696021!10041-101F5;0.0814978!10451-106G1;0.957217!10450-106F9;0.766156!10604-108F1;0.541849!10605-108F2;0.562323!10606-108F3;0.786997!10603-108E9;0.597301!10497-107C2;0.907984!10448-106F7;0.565071!10643-109A4;0.768725!10426-106D3;0.326936!10431-106D8;0.010985!10197-103E8;0.161609!10443-106F2;0.530785!10815-111B5;0.987342!10816-111B6;0.402445!10817-111B7;0.397833!10015-101C6;0.415011!10410-106B5;0.788156!10054-101G9;0.983939!10758-110E2;0.936702!10711-109H9;0.134219!10040-101F4;0.401457!10470-106I2;0.305155!10415-106C1;0.590933!10198-103E9;0.883983!10614-108G2;0.673081!10612-108F9;0.224423!10549-107H9;0.481248!10615-108G3;0.465804!10487-107B1;0.584662!10433-106E1;0.928458!10688-109F4;0.947154!10444-106F3;0.0726363!10444-106F3;0.000149474!10485-107A8;0.00028349!10413-106B8;0.0597761!10175-103C4;0.81111!10161-103A8;0.921119!12131-128D7;0.689372!10624-108H3;0.90158!10712-109I1;0.0195589!10205-103F7;0.467369!10206-103F8;0.432862!10207-103F9;0.229139!10050-101G5;0.451306!10051-101G6;0.145419!10016-101C7;0.0742224!10046-101G1;0.133668!10778-110G4;0.46393!10633-108I3;0.871211!10818-111B8;0.212305!10819-111B9;0.942799!10820-111C1;0.959538!10484-107A7;0.899663!10808-111A7;0.696632!10169-103B7;0.845154!10153-102I9;0.654902!13425-144D5;0.406266!13433-144E4;0.634149!13437-144E8;0.746077!11904-125F5;0.917102!11905-125F6;0.540402!10039-101F3;0.365633!10791-110H8;0.296777!10017-101C8;0.0871236!10045-101F9;0.240386!10509-107D5;0.996947!10839-111E2;0.877843!10692-109F8;0.950353!10079-102A7;0.0185905!10078-102A6;0.310008!10721-110A1;0.138322!10569-108B2;0.529418!10570-108B3;0.249494!10571-108B4;0.456621!10647-109A8;0.502676!10752-110D5;0.971637!10782-110G8;0.634831!10726-110A6;0.742271!10018-101C9;0.136081!10086-102B5;0.0452525!10182-103D2;0.377294!10165-103B3;0.515321!10499-107C4;0.605008!10408-106B3;0.818776!10019-101D1;0.34891!10068-101I5;0.962279!10075-102A3;0.560511!10077-102A5;0.80731!10727-110A7;0.248323!10775-110G1;0.811994!10412-106B7;0.63087!12231-129F8;0.0324898!12232-129F9;0.599279!12233-129G1;0.703565!12234-129G2;0.469993!10414-106B9;0.444269!10170-103B8;0.363318!10183-103D3;0.345687!10150-102I6;0.370761!10174-103C3;0.299709!10155-103A2;0.814835!10038-101F2;0.555822!10838-111E1;0.69297!10759-110E3;0.384067!10514-107E1;0.0538265!10465-106H6;0.835087!10691-109F7;0.847605!10843-111E6;0.38966!10844-111E7;0.468132!11747-123G1;0.206816!11748-123G2;0.57321!11749-123G3;0.219298!11750-123G4;0.36434!11751-123G5;0.238168!11840-124H4;0.423641!11752-123G6;0.155739!11753-123G7;0.0931561!11754-123G8;0.452942!11755-123G9;0.496897!11756-123H1;0.617212!11833-124G6;0.652543!11760-123H5;0.162537!11836-124G9;0.823558!11758-123H3;0.82345!11835-124G8;0.937744!11762-123H7;0.479741!11838-124H2;0.343347!11757-123H2;0.691858!11759-123H4;0.433081!11761-123H6;0.227096!11842-124H6;0.97933!11837-124H1;0.724485!10568-108B1;0.732752!13230-141I8;0.795482!13231-141I9;0.302801!10696-109G3;0.431605!10493-107B7;0.0230801!10494-107B8;0.835987!10850-111F4;0.0443698!10851-111F5;0.655619!10852-111F6;0.0434835!10853-111F7;0.982756!10854-111F8;0.912789!10855-111F9;0.0509726!10856-111G1;0.118374!10847-111F1;0.442516!10846-111E9;0.19933!10848-111F2;0.295304!10845-111E8;0.209064!10857-111G2;0.452227!10858-111G3;0.732351!10156-103A3;0.906097!11901-125F2;0.269283!11902-125F3;0.548715!11903-125F4;0.671651!10689-109F5;0.301096!10648-109A9;0.0952127!10784-110H1;0.79135!10744-110C6;0.141837!10772-110F7;0.876816!10474-106I6;0.422117!10600-108E6;0.605596!10684-109E9;0.0267377!12226-129F3;0.1546!12227-129F4;0.19361!10508-107D4;0.0370855!10539-107G8;0.688803!10607-108F4;0.0818119!10555-107I6;0.934329!10774-110F9;0.338799!10637-108I7;0.572451!10663-109C6;0.319309!10728-110A8;0.510281!10729-110A9;0.366527!10430-106D7;0.930868!10730-110B1;0.678155!10813-111B3;0.542852!10812-111B2;0.697627!10037-101F1;0.18106!10172-103C1;0.391312!10163-103B1;0.498169!10076-102A4;0.25362!10073-102A1;0.401209!10036-101E9;0.169837!10195-103E6;0.379183!10277-104E7;0.362325!10434-106E2;0.962607!10550-107I1;0.0964893!10545-107H5;0.484562!10544-107H4;0.0105223!10704-109H2;0.0771304!10510-107D6;0.716534!10558-107I9;0.108138!10020-101D2;0.045001!10732-110B3;0.930796!10049-101G4;0.471431!10698-109G5;0.0851617!10437-106E5;0.314223!10417-106C3;0.137858!10035-101E8;0.599032!10171-103B9;0.306703!10157-103A4;0.331378!10034-101E7;0.242653!10072-101I9;0.320788!10199-103F1;0.0797256!10200-103F2;0.819532!10697-109G4;0.443046!10723-110A3;0.745859!10179-103C8;0.0441961!10160-103A7;0.686878!10180-103C9;0.536312!10162-103A9;0.590374!10021-101D3;0.254621!10840-111E3;0.80478!10706-109H4;0.672151!10033-101E6;0.0141657!10032-101E5;0.429792!10490-107B4;0.379953!10439-106E7;0.72596!10022-101D4;0.301182!10176-103C5;0.849485!10469-106I1;0.546938!10067-101I4;0.33743!10411-106B6;0.542184!10471-106I3;0.0443929!10030-101E3;0.506854!10475-106I7;0.863703!10787-110H4;0.431103!10477-106I9;0.611971!10695-109G2;0.571931!11771-123I7;0.998866!11772-123I8;0.00293036!11773-123I9;4.03675e-05!10093-102C3;0.004095!10442-106F1;0.894156!10442-106F1;0.31178!10201-103F3;0.411443!10639-108I9;0.920616!11843-124H7;0.0111371!11841-124H5;0.325998!10693-109F9;0.18152!10436-106E4;0.897219!10483-107A6;0.520623!10282-104F3;0.443347!10023-101D5;0.00896617!10066-101I3;0.0379181!10065-101I2;0.410757!10800-110I8;0.916746!10610-108F7;0.505507!10841-111E4;0.13005!10541-107H1;0.585254!10842-111E5;0.541609!10562-108A4;0.322188!10024-101D6;0.630138!10064-101I1;0.73191!10609-108F6;0.739202!10048-101G3;0.862247!10781-110G7;0.99363!10181-103D1;0.372532!10159-103A6;0.608682!10056-101H2;0.6324!10737-110B8;0.809628!10025-101D7;0.58026!10044-101F8;0.542284!10424-106D1;0.878454!10463-106H4;0.803059!10616-108G4;0.281973!10486-107A9;0.157141!10062-101H8;0.877714!10202-103F4;0.811644!10158-103A5;0.751571!10441-106E9;0.942982!10031-101E4;0.03757!10063-101H9;0.503748!10063-101H9;0.0658396!11763-123H8;0.711156!11765-123I1;0.216092!11768-123I4;0.2412!10807-111A6;0.298544!10790-110H7;0.473006!10798-110I6;0.518497!10786-110H3;0.0628686!10591-108D6;0.976298!10593-108D8;0.753295!10590-108D5;0.632441!10026-101D8;0.998458!10096-102C6;0.443417!10168-103B6;0.39855!10154-103A1;0.745015!10209-103G2;0.532757!10061-101H7;0.518405!10027-101D9;0.91432!10043-101F7;0.264346!10783-110G9;0.251161!10028-101E1;0.0370778!10060-101H6;0.508739!10203-103F5;0.728952!10059-101H5;0.533089!10047-101G2;0.39632!10029-101E2;0.825089!10058-101H4;0.968844!10418-106C4;0.785958!10492-107B6;0.135622!10694-109G1;0.925565!10797-110I5;0.873728!10057-101H3;0.793961!10100-102D1;0.539683!10055-101H1;0.884303!10204-103F6;0.566771!10191-103E2;0.484572!10563-108A5;0.731591
|name=RXR{A,B,G}
|name=RXR{A,B,G
|tomtom_result=usp#MA0016.1;0;5.31403e-13;2.52948e-10;5.00427e-10;10;GGGGTCACGG;GGGGTCACGG;+!ESR1#MA0112.2;0;1.48343e-05;0.00706113;0.00698479;10;GGGGTCACGG;GGGGTCACGGTGACCTGG;-!ESR2#MA0258.1;1;0.000129073;0.0614388;0.0405164;10;GGGGTCACGG;CAAGGTCACGGTGACCTG;+!PPARG#MA0066.1;2;0.000207769;0.0988978;0.0489144;10;GGGGTCACGG;AGTAGGTCACCGTGACCTAC;-!RXR::RAR_DR5#MA0159.1;-1;0.000538618;0.256382;0.101444;9;GGGGTCACGG;AGGTCATGGAGAGGTCA;+!RXRA::VDR#MA0074.1;-1;0.000928289;0.441865;0.109272;9;GGGGTCACGG;GGGTCAACGAGTTCA;+!ESR1#MA0112.2;-1;0.00122818;0.584615;0.12851;9;GGGGTCACGG;AGGTCAGGGTGACCTGGGCC;-!NR4A2#MA0160.1;0;0.00139048;0.66187;0.130943;8;GGGGTCACGG;AAGGTCAC;+!ARG81#MA0272.1;0;0.00174768;0.831895;0.149619;8;GGGGTCACGG;AGAGTCAC;-!PPARG::RXRA#MA0065.1;3;0.00194145;0.924128;0.151388;10;GGGGTCACGG;CTAGGGGTCAAAGGTCATCG;+!Pax2#MA0067.1;-2;0.00208987;0.994777;0.151388;8;GGGGTCACGG;AGTCACGG;+!abi4#MA0123.1;0;0.00279296;1.32945;0.187868;10;GGGGTCACGG;GGGGGCACCG;-!Spz1#MA0111.1;0;0.00441749;2.10273;0.277333;10;GGGGTCACGG;AGGGTAACAGC;+!USV1#MA0413.1;10;0.00641583;3.05393;0.355402;10;GGGGTCACGG;CACAAATTCAGGGGGAATTT;-!PLAG1#MA0163.1;1;0.00710043;3.3798;0.371474;10;GGGGTCACGG;GGGGCCCAAGGGGG;+!Ar#MA0007.1;3;0.00914265;4.3519;0.424804;10;GGGGTCACGG;GGCGGGTACACGATGTTCTTAT;-!CTCF#MA0139.1;9;0.00947309;4.50919;0.424804;10;GGGGTCACGG;TGGCCACCAGGGGGCGCTA;+!Macho-1#MA0118.1;2;0.0100358;4.77704;0.429581;7;GGGGTCACGG;TGGGGGGTC;+!CREB1#MA0018.2;0;0.0117317;5.58429;0.480341;10;GGGGTCACGG;GACGTCACCAGG;-!opa#MA0456.1;6;0.0135272;6.43897;0.515196;6;GGGGTCACGG;CAGCGGGGGGTC;-!SP1#MA0079.2;0;0.0136772;6.51033;0.515196;10;GGGGTCACGG;GGGGGCGGGG;-!INSM1#MA0155.1;5;0.0150323;7.15535;0.544462;7;GGGGTCACGG;TGTCAGGGGGCG;+!REB1#MA0363.1;1;0.0178416;8.49259;0.598402;8;GGGGTCACGG;CCGGGTAAC;-!NR2F1#MA0017.1;0;0.0189831;9.03598;0.598402;10;GGGGTCACGG;AGGTTCAAAGGTCA;-!CREB1#MA0018.2;1;0.0190633;9.07412;0.598402;7;GGGGTCACGG;TGACGTCA;-!ADR1#MA0268.1;2;0.0209635;9.97864;0.631196;5;GGGGTCACGG;GTGGGGT;-
}}
}}

Latest revision as of 12:09, 7 September 2012

Full Name: RXR{A,B,G

Motif matrix
null

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
usp#MA0016.105.31403e-132.52948e-105.00427e-1010GGGGTCACGGGGGGTCACGG+
ESR1#MA0112.201.48343e-050.007061130.0069847910GGGGTCACGGGGGGTCACGGTGACCTGG-
ESR2#MA0258.110.0001290730.06143880.040516410GGGGTCACGGCAAGGTCACGGTGACCTG+
PPARG#MA0066.120.0002077690.09889780.048914410GGGGTCACGGAGTAGGTCACCGTGACCTAC-
RXR::RAR_DR5#MA0159.1-10.0005386180.2563820.1014449GGGGTCACGGAGGTCATGGAGAGGTCA+
RXRA::VDR#MA0074.1-10.0009282890.4418650.1092729GGGGTCACGGGGGTCAACGAGTTCA+
ESR1#MA0112.2-10.001228180.5846150.128519GGGGTCACGGAGGTCAGGGTGACCTGGGCC-
NR4A2#MA0160.100.001390480.661870.1309438GGGGTCACGGAAGGTCAC+
ARG81#MA0272.100.001747680.8318950.1496198GGGGTCACGGAGAGTCAC-
PPARG::RXRA#MA0065.130.001941450.9241280.15138810GGGGTCACGGCTAGGGGTCAAAGGTCATCG+
Pax2#MA0067.1-20.002089870.9947770.1513888GGGGTCACGGAGTCACGG+
abi4#MA0123.100.002792961.329450.18786810GGGGTCACGGGGGGGCACCG-
Spz1#MA0111.100.004417492.102730.27733310GGGGTCACGGAGGGTAACAGC+
USV1#MA0413.1100.006415833.053930.35540210GGGGTCACGGCACAAATTCAGGGGGAATTT-
PLAG1#MA0163.110.007100433.37980.37147410GGGGTCACGGGGGGCCCAAGGGGG+
Ar#MA0007.130.009142654.35190.42480410GGGGTCACGGGGCGGGTACACGATGTTCTTAT-
CTCF#MA0139.190.009473094.509190.42480410GGGGTCACGGTGGCCACCAGGGGGCGCTA+
Macho-1#MA0118.120.01003584.777040.4295817GGGGTCACGGTGGGGGGTC+
CREB1#MA0018.200.01173175.584290.48034110GGGGTCACGGGACGTCACCAGG-
opa#MA0456.160.01352726.438970.5151966GGGGTCACGGCAGCGGGGGGTC-
SP1#MA0079.200.01367726.510330.51519610GGGGTCACGGGGGGGCGGGG-
INSM1#MA0155.150.01503237.155350.5444627GGGGTCACGGTGTCAGGGGGCG+
REB1#MA0363.110.01784168.492590.5984028GGGGTCACGGCCGGGTAAC-
NR2F1#MA0017.100.01898319.035980.59840210GGGGTCACGGAGGTTCAAAGGTCA-
CREB1#MA0018.210.01906339.074120.5984027GGGGTCACGGTGACGTCA-
ADR1#MA0268.120.02096359.978640.6311965GGGGTCACGGGTGGGGT-
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:RXR(A,B,G)&oldid=2133555"