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MacroAPE 1083:FOX(C1,C2): Difference between revisions

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|PWM=null
|PWM=null
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10828-111C9;0.50318!10788-110H5;0.229512!10792-110H9;0.244866!10765-110E9;0.467933!10829-111D1;0.45306!10830-111D2;0.495211!10831-111D3;0.811086!10832-111D4;0.765116!10833-111D5;0.135078!10764-110E8;0.156148!10770-110F5;0.62162!10399-106A3;0.366234!10400-106A4;0.235511!10405-106A9;0.24971!10834-111D6;0.224736!10835-111D7;0.485464!10836-111D8;0.180279!10837-111D9;0.514384!10699-109G6;0.274345!10802-111A1;0.238044!10796-110I4;0.402438!10010-101C1;0.0827022!10810-111A9;0.481653!10421-106C7;0.045455!10708-109H6;0.76211!12235-129G3;0.746184!12236-129G4;0.300032!12237-129G5;0.355101!10167-103B5;0.443484!10151-102I7;0.36354!10428-106D5;0.244395!10795-110I3;0.391414!10805-111A4;0.242658!10052-101G7;0.976185!10189-103D9;0.990314!10589-108D4;0.964418!10425-106D2;0.983142!10427-106D4;0.949127!10702-109G9;0.950164!10432-106D9;0.62941!10496-107C1;0.784205!10718-109I7;0.36817!10011-101C2;0.435722!10053-101G8;0.852355!10686-109F2;0.350074!10084-102B3;0.988001!10012-101C3;0.509118!10085-102B4;0.663249!10482-107A5;0.529212!10419-106C5;0.538078!10080-102A8;0.974945!10760-110E4;0.615973!10709-109H7;0.184086!10710-109H8;0.931605!10703-109H1;0.042694!10719-109I8;0.761648!10642-109A3;0.808271!10177-103C6;0.955617!10164-103B2;0.326215!10173-103C2;0.430789!10166-103B4;0.597919!10083-102B2;0.494953!10188-103D8;0.694431!10552-107I3;0.31671!10553-107I4;0.112949!10013-101C4;0.0358011!10536-107G5;0.728083!10618-108G6;0.875358!10423-106C9;0.445826!10785-110H2;0.909128!12238-129G6;0.83304!12239-129G7;0.337102!12240-129G8;0.816052!10416-106C2;0.174317!10801-110I9;0.0895597!10766-110F1;0.234465!10824-111C5;0.561098!10825-111C6;0.895985!10826-111C7;0.805388!10454-106G4;0.990857!10409-106B4;0.768095!10638-108I8;0.27083!10636-108I6;0.592201!10513-107D9;0.745709!10420-106C6;0.0177582!10082-102B1;0.506631!10014-101C5;0.456586!10070-101I7;0.740679!10452-106G2;0.391523!10453-106G3;0.973954!10449-106F8;0.850442!10042-101F6;0.884356!10069-101I6;0.992938!10193-103E4;0.0490986!10631-108I1;0.927473!10438-106E6;0.205165!10488-107B2;0.238173!10196-103E7;0.414379!10071-101I8;0.684959!10071-101I8;0.579001!10041-101F5;0.317832!10451-106G1;0.695941!10450-106F9;0.271071!10604-108F1;0.588005!10605-108F2;0.293379!10606-108F3;0.300273!10603-108E9;0.152068!10497-107C2;0.367387!10448-106F7;0.637822!10643-109A4;0.975061!10426-106D3;0.106492!10431-106D8;0.234554!10197-103E8;0.218112!10443-106F2;0.936364!10815-111B5;0.547244!10816-111B6;0.379395!10817-111B7;0.385257!10015-101C6;0.365704!10410-106B5;0.828526!10054-101G9;0.0680263!10758-110E2;0.667015!10711-109H9;0.672782!10040-101F4;0.578385!10470-106I2;0.459074!10415-106C1;0.180309!10198-103E9;0.398322!10614-108G2;0.82664!10612-108F9;0.91833!10549-107H9;0.249343!10615-108G3;0.20204!10487-107B1;0.760081!10433-106E1;0.646954!10688-109F4;0.308357!10444-106F3;0.136641!10444-106F3;0.831741!10485-107A8;0.654996!10413-106B8;0.7986!10175-103C4;0.698069!10161-103A8;0.929811!12131-128D7;0.761974!10624-108H3;0.42129!10712-109I1;0.211012!10205-103F7;0.582512!10206-103F8;0.670962!10207-103F9;0.347724!10050-101G5;0.770341!10051-101G6;0.849281!10016-101C7;0.450066!10046-101G1;0.638649!10778-110G4;0.330939!10633-108I3;0.892137!10818-111B8;0.207999!10819-111B9;0.798439!10820-111C1;0.8377!10484-107A7;0.746345!10808-111A7;0.831323!10169-103B7;0.716035!10153-102I9;0.290187!13425-144D5;0.242759!13433-144E4;0.805106!13437-144E8;0.529157!11904-125F5;0.800903!11905-125F6;0.626237!10039-101F3;0.914495!10791-110H8;0.437479!10017-101C8;0.309029!10045-101F9;0.828281!10509-107D5;0.681219!10839-111E2;0.238493!10692-109F8;0.254706!10079-102A7;0.116036!10078-102A6;0.322645!10721-110A1;0.458228!10569-108B2;0.371524!10570-108B3;0.824639!10571-108B4;0.994429!10647-109A8;0.952845!10752-110D5;0.629545!10782-110G8;0.529973!10726-110A6;0.329364!10018-101C9;0.945996!10086-102B5;0.247857!10182-103D2;0.225799!10165-103B3;0.522262!10499-107C4;0.81854!10408-106B3;0.108401!10019-101D1;0.701419!10068-101I5;0.582321!10075-102A3;0.690527!10077-102A5;0.612716!10727-110A7;0.861562!10775-110G1;0.642298!10412-106B7;0.904448!12231-129F8;0.136095!12232-129F9;0.603748!12233-129G1;0.787952!12234-129G2;0.886524!10414-106B9;0.5054!10170-103B8;0.75833!10183-103D3;0.467597!10150-102I6;0.360465!10174-103C3;0.321909!10155-103A2;0.8687!10038-101F2;0.680382!10838-111E1;0.943166!10759-110E3;0.70392!10514-107E1;0.620933!10465-106H6;0.605348!10691-109F7;0.556468!10843-111E6;0.740172!10844-111E7;0.825877!11747-123G1;0.812904!11748-123G2;0.924187!11749-123G3;0.747536!11750-123G4;0.703592!11751-123G5;0.922065!11840-124H4;0.932347!11752-123G6;0.842719!11753-123G7;0.690517!11754-123G8;0.617762!11755-123G9;0.896418!11756-123H1;0.860964!11833-124G6;0.858093!11760-123H5;0.907618!11836-124G9;0.77022!11758-123H3;0.918653!11835-124G8;0.896774!11762-123H7;0.712793!11838-124H2;0.963741!11757-123H2;0.893136!11759-123H4;0.914751!11761-123H6;0.31789!11842-124H6;0.691599!11837-124H1;0.469827!10568-108B1;0.541933!13230-141I8;0.205174!13231-141I9;0.417501!10696-109G3;0.504793!10493-107B7;0.39608!10494-107B8;0.0239439!10850-111F4;0.594955!10851-111F5;0.282804!10852-111F6;0.927185!10853-111F7;0.976689!10854-111F8;0.308701!10855-111F9;0.961889!10856-111G1;0.372253!10847-111F1;0.901732!10846-111E9;0.995952!10848-111F2;0.610773!10845-111E8;0.630021!10857-111G2;0.818276!10858-111G3;0.195627!10156-103A3;0.421728!11901-125F2;0.450811!11902-125F3;0.904102!11903-125F4;0.812648!10689-109F5;0.903098!10648-109A9;0.417767!10784-110H1;0.671849!10744-110C6;0.589837!10772-110F7;0.729574!10474-106I6;0.719637!10600-108E6;0.97587!10684-109E9;0.507579!12226-129F3;0.772191!12227-129F4;0.0996086!10508-107D4;0.0773433!10539-107G8;0.509244!10607-108F4;0.681278!10555-107I6;0.861323!10774-110F9;0.391625!10637-108I7;0.82931!10663-109C6;0.893929!10728-110A8;0.827979!10729-110A9;0.592542!10430-106D7;0.973565!10730-110B1;0.673949!10813-111B3;0.961496!10812-111B2;0.705869!10037-101F1;0.878414!10172-103C1;0.442572!10163-103B1;0.454607!10076-102A4;0.417748!10073-102A1;0.305231!10036-101E9;0.213319!10195-103E6;0.5101!10277-104E7;0.540351!10434-106E2;0.796419!10550-107I1;0.258005!10545-107H5;0.187392!10544-107H4;0.110554!10704-109H2;0.339614!10510-107D6;0.830855!10558-107I9;0.224562!10020-101D2;0.692348!10732-110B3;0.495307!10049-101G4;0.846182!10698-109G5;0.717253!10437-106E5;0.447722!10417-106C3;0.454413!10035-101E8;0.491539!10171-103B9;0.466159!10157-103A4;0.434913!10034-101E7;0.381272!10072-101I9;0.551735!10199-103F1;0.150741!10200-103F2;0.829922!10697-109G4;0.833277!10723-110A3;0.415666!10179-103C8;0.0861925!10160-103A7;0.609336!10180-103C9;0.959348!10162-103A9;0.707982!10021-101D3;0.631637!10840-111E3;0.24471!10706-109H4;0.991125!10033-101E6;0.350499!10032-101E5;0.820373!10490-107B4;0.598993!10439-106E7;0.0871657!10022-101D4;0.208769!10176-103C5;0.989163!10469-106I1;0.337382!10067-101I4;0.114462!10411-106B6;0.931267!10471-106I3;0.854542!10030-101E3;0.340416!10475-106I7;0.991856!10787-110H4;0.549131!10477-106I9;0.830302!10695-109G2;0.443629!11771-123I7;0.481491!11772-123I8;0.491185!11773-123I9;0.257584!10093-102C3;0.0173066!10442-106F1;0.877185!10442-106F1;0.307763!10201-103F3;0.223161!10639-108I9;0.369609!11843-124H7;0.496755!11841-124H5;0.0493752!10693-109F9;0.336922!10436-106E4;0.809806!10483-107A6;0.565967!10282-104F3;0.40837!10023-101D5;0.180326!10066-101I3;0.0335521!10065-101I2;0.0555476!10800-110I8;0.782737!10610-108F7;0.660209!10841-111E4;0.527187!10541-107H1;0.326368!10842-111E5;0.667512!10562-108A4;0.181114!10024-101D6;0.621151!10064-101I1;0.91416!10609-108F6;0.280693!10048-101G3;0.281112!10781-110G7;0.644337!10181-103D1;0.414367!10159-103A6;0.936648!10056-101H2;0.895253!10737-110B8;0.651892!10025-101D7;0.849093!10044-101F8;0.906849!10424-106D1;0.936879!10463-106H4;0.84966!10616-108G4;0.143335!10486-107A9;0.404484!10062-101H8;0.382158!10202-103F4;0.7764!10158-103A5;0.647639!10441-106E9;0.754455!10031-101E4;0.097361!10063-101H9;0.597312!10063-101H9;0.24578!11763-123H8;0.74899!11765-123I1;0.75199!11768-123I4;0.919518!10807-111A6;0.553936!10790-110H7;0.689274!10798-110I6;0.601454!10786-110H3;0.895087!10591-108D6;0.42726!10593-108D8;0.944759!10590-108D5;0.51448!10026-101D8;0.437399!10096-102C6;0.7995!10168-103B6;0.808545!10154-103A1;0.875769!10209-103G2;0.935381!10061-101H7;0.313453!10027-101D9;0.72222!10043-101F7;0.227162!10783-110G9;0.460956!10028-101E1;0.878114!10060-101H6;0.895692!10203-103F5;0.813362!10059-101H5;0.193656!10047-101G2;0.0495757!10029-101E2;0.922181!10058-101H4;0.804547!10418-106C4;0.695465!10492-107B6;0.641044!10694-109G1;0.634004!10797-110I5;0.551774!10057-101H3;0.409907!10100-102D1;0.806984!10055-101H1;0.929596!10204-103F6;0.672534!10191-103E2;0.668481!10563-108A5;0.69473
|name=FOX{C1,C2}
|name=FOX{C1,C2
|tomtom_result=FOXC1#MA0032.1;0;0.000525286;0.250036;0.379023;8;AGTAAGTA;GGTAAGTA;+!NKX3-1#MA0124.1;-2;0.000831348;0.395722;0.379023;6;AGTAAGTA;TAAGTAT;-!exex#MA0224.1;-1;0.00417748;1.98848;0.600708;7;AGTAAGTA;GTAATTA;+!exex#MA0224.1;-1;0.00417748;1.98848;0.600708;7;AGTAAGTA;GTAATTA;+!Dll#MA0187.1;-1;0.00440479;2.09668;0.600708;7;AGTAAGTA;GTAATTA;-!Foxa2#MA0047.2;0;0.00574284;2.73359;0.600708;8;AGTAAGTA;CCTAAGTAAACA;-!RORA_2#MA0072.1;0;0.00722168;3.43752;0.600708;8;AGTAAGTA;TATAAGTAGGTCAA;+!ELF5#MA0136.1;1;0.0102588;4.88321;0.600708;8;AGTAAGTA;AAGGAAGTA;-!SPI1#MA0080.2;0;0.0111577;5.31108;0.600708;7;AGTAAGTA;AGGAAGT;+!bap#MA0211.1;-1;0.0111577;5.31108;0.600708;7;AGTAAGTA;TTAAGTG;+!Nobox#MA0125.1;0;0.015261;7.26424;0.600708;8;AGTAAGTA;ACCAATTA;-!YAP7#MA0419.1;3;0.0165172;7.86219;0.600708;8;AGTAAGTA;ATTAGTAAGCA;+!lbe#MA0231.1;-2;0.0173765;8.2712;0.600708;6;AGTAAGTA;TAACTA;+!YAP1#MA0415.1;9;0.017707;8.42854;0.600708;8;AGTAAGTA;ACGAGCTTACGTAAGCAAAT;-
}}
}}

Latest revision as of 12:19, 7 September 2012

Full Name: FOX{C1,C2

Motif matrix
null

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
FOXC1#MA0032.100.0005252860.2500360.3790238AGTAAGTAGGTAAGTA+
NKX3-1#MA0124.1-20.0008313480.3957220.3790236AGTAAGTATAAGTAT-
exex#MA0224.1-10.004177481.988480.6007087AGTAAGTAGTAATTA+
exex#MA0224.1-10.004177481.988480.6007087AGTAAGTAGTAATTA+
Dll#MA0187.1-10.004404792.096680.6007087AGTAAGTAGTAATTA-
Foxa2#MA0047.200.005742842.733590.6007088AGTAAGTACCTAAGTAAACA-
RORA_2#MA0072.100.007221683.437520.6007088AGTAAGTATATAAGTAGGTCAA+
ELF5#MA0136.110.01025884.883210.6007088AGTAAGTAAAGGAAGTA-
SPI1#MA0080.200.01115775.311080.6007087AGTAAGTAAGGAAGT+
bap#MA0211.1-10.01115775.311080.6007087AGTAAGTATTAAGTG+
Nobox#MA0125.100.0152617.264240.6007088AGTAAGTAACCAATTA-
YAP7#MA0419.130.01651727.862190.6007088AGTAAGTAATTAGTAAGCA+
lbe#MA0231.1-20.01737658.27120.6007086AGTAAGTATAACTA+
YAP1#MA0415.190.0177078.428540.6007088AGTAAGTAACGAGCTTACGTAAGCAAAT-
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