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MacroAPE 1083:TTCTGCACC,motif618: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;56.364;80.703;51.24;1092.693!2;74.298;97.356;81.984;1027.362!3;37.149;1052.982;79.422;111.447!4;125.538;138.348;64.05;953.064!5;107.604;192....")
 
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540792!10828-111C9;0.975146!10788-110H5;0.600857!10792-110H9;0.675351!10765-110E9;0.740013!10829-111D1;0.639456!10830-111D2;0.485122!10831-111D3;0.989722!10832-111D4;0.622554!10833-111D5;0.904047!10764-110E8;0.875226!10770-110F5;0.858351!10399-106A3;0.946211!10400-106A4;0.795718!10405-106A9;0.881054!10834-111D6;0.879406!10835-111D7;0.765222!10836-111D8;0.880854!10837-111D9;0.979527!10699-109G6;0.980778!10802-111A1;0.720343!10796-110I4;0.918339!10010-101C1;0.214228!10810-111A9;0.232087!10421-106C7;0.748304!10708-109H6;0.516021!12235-129G3;0.787819!12236-129G4;0.491778!12237-129G5;0.981822!10167-103B5;0.690032!10151-102I7;0.111087!10428-106D5;0.278365!10795-110I3;0.366843!10805-111A4;0.645643!10052-101G7;0.979396!10189-103D9;0.611966!10589-108D4;0.782803!10425-106D2;0.586362!10427-106D4;0.516839!10702-109G9;0.640614!10432-106D9;0.796139!10496-107C1;0.527397!10718-109I7;0.931881!10011-101C2;0.834968!10053-101G8;0.566201!10686-109F2;0.688211!10084-102B3;0.0437183!10012-101C3;0.251674!10085-102B4;0.132546!10482-107A5;0.353102!10419-106C5;0.73529!10080-102A8;0.571685!10760-110E4;0.173668!10709-109H7;0.922436!10710-109H8;0.216115!10703-109H1;0.697935!10719-109I8;0.85989!10642-109A3;0.661548!10177-103C6;0.622645!10164-103B2;0.334042!10173-103C2;0.272181!10166-103B4;0.222755!10083-102B2;0.357863!10188-103D8;0.235146!10552-107I3;0.139873!10553-107I4;0.359637!10013-101C4;0.621352!10536-107G5;0.890425!10618-108G6;0.569515!10423-106C9;0.744466!10785-110H2;0.749877!12238-129G6;0.742142!12239-129G7;0.246385!12240-129G8;0.529437!10416-106C2;0.410208!10801-110I9;0.588888!10766-110F1;0.815071!10824-111C5;0.884186!10825-111C6;0.806618!10826-111C7;0.808557!10454-106G4;0.793107!10409-106B4;0.979685!10638-108I8;0.87966!10636-108I6;0.615298!10513-107D9;0.524072!10420-106C6;0.812826!10082-102B1;0.937091!10014-101C5;0.558505!10070-101I7;0.688205!10452-106G2;0.918412!10453-106G3;0.671048!10449-106F8;0.978735!10042-101F6;0.938583!10069-101I6;0.624804!10193-103E4;0.355732!10631-108I1;0.179957!10438-106E6;0.748836!10488-107B2;0.549087!10196-103E7;0.77775!10071-101I8;0.609082!10071-101I8;0.722076!10041-101F5;0.164522!10451-106G1;0.973985!10450-106F9;0.923178!10604-108F1;0.894624!10605-108F2;0.768417!10606-108F3;0.647217!10603-108E9;0.624894!10497-107C2;0.436558!10448-106F7;0.72024!10643-109A4;0.93815!10426-106D3;0.605014!10431-106D8;0.325175!10197-103E8;0.705459!10443-106F2;0.999864!10815-111B5;0.650527!10816-111B6;0.481634!10817-111B7;0.327776!10015-101C6;0.462532!10410-106B5;0.624088!10054-101G9;0.877554!10758-110E2;0.657609!10711-109H9;0.993375!10040-101F4;0.956356!10470-106I2;0.113756!10415-106C1;0.533701!10198-103E9;0.316989!10614-108G2;0.598062!10612-108F9;0.341589!10549-107H9;0.572284!10615-108G3;0.964991!10487-107B1;0.258525!10433-106E1;0.734602!10688-109F4;0.244418!10444-106F3;0.123414!10444-106F3;0.913898!10485-107A8;0.717663!10413-106B8;0.392413!10175-103C4;0.958196!10161-103A8;0.398803!12131-128D7;0.86526!10624-108H3;0.256082!10712-109I1;0.389139!10205-103F7;0.422597!10206-103F8;0.59673!10207-103F9;0.586667!10050-101G5;0.235205!10051-101G6;0.254753!10016-101C7;0.153229!10046-101G1;0.113744!10778-110G4;0.453986!10633-108I3;0.776339!10818-111B8;0.586758!10819-111B9;0.95713!10820-111C1;0.958791!10484-107A7;0.991033!10808-111A7;0.699226!10169-103B7;0.591661!10153-102I9;0.151564!13425-144D5;0.385863!13433-144E4;0.585718!13437-144E8;0.327714!11904-125F5;0.256471!11905-125F6;0.0157117!10039-101F3;0.0280306!10791-110H8;0.151557!10017-101C8;0.354854!10045-101F9;0.705969!10509-107D5;0.737211!10839-111E2;0.414388!10692-109F8;0.280098!10079-102A7;0.426639!10078-102A6;0.48162!10721-110A1;0.155174!10569-108B2;0.973637!10570-108B3;0.478884!10571-108B4;0.178273!10647-109A8;0.304036!10752-110D5;0.474455!10782-110G8;0.957575!10726-110A6;0.821611!10018-101C9;0.350305!10086-102B5;0.324206!10182-103D2;0.583368!10165-103B3;0.295807!10499-107C4;0.312565!10408-106B3;0.610384!10019-101D1;0.457062!10068-101I5;0.498235!10075-102A3;0.898424!10077-102A5;0.428281!10727-110A7;0.591589!10775-110G1;0.708744!10412-106B7;0.838712!12231-129F8;0.523587!12232-129F9;0.00559842!12233-129G1;0.00754787!12234-129G2;0.0191773!10414-106B9;0.00657699!10170-103B8;0.827221!10183-103D3;0.0469198!10150-102I6;0.0795517!10174-103C3;0.250934!10155-103A2;0.439161!10038-101F2;0.423539!10838-111E1;0.48544!10759-110E3;0.918911!10514-107E1;0.387479!10465-106H6;0.153306!10691-109F7;0.706555!10843-111E6;0.858755!10844-111E7;0.568946!11747-123G1;0.39363!11748-123G2;0.551953!11749-123G3;0.922369!11750-123G4;0.76418!11751-123G5;0.897903!11840-124H4;0.567139!11752-123G6;0.772385!11753-123G7;0.835032!11754-123G8;0.623597!11755-123G9;0.980972!11756-123H1;0.964534!11833-124G6;0.72457!11760-123H5;0.91702!11836-124G9;0.937752!11758-123H3;0.327757!11835-124G8;0.260471!11762-123H7;0.626127!11838-124H2;0.576457!11757-123H2;0.527424!11759-123H4;0.678554!11761-123H6;0.987747!11842-124H6;0.788521!11837-124H1;0.77357!10568-108B1;0.620786!13230-141I8;0.657093!13231-141I9;0.546603!10696-109G3;0.714672!10493-107B7;0.458252!10494-107B8;0.663395!10850-111F4;0.299566!10851-111F5;0.659165!10852-111F6;0.629703!10853-111F7;0.416403!10854-111F8;0.343399!10855-111F9;0.328442!10856-111G1;0.604218!10847-111F1;0.0295115!10846-111E9;0.393412!10848-111F2;0.387169!10845-111E8;0.308281!10857-111G2;0.965762!10858-111G3;0.620406!10156-103A3;0.568168!11901-125F2;0.23254!11902-125F3;0.59347!11903-125F4;0.763722!10689-109F5;0.741127!10648-109A9;0.898038!10784-110H1;0.459199!10744-110C6;0.647421!10772-110F7;0.68405!10474-106I6;0.919041!10600-108E6;0.46572!10684-109E9;0.496931!12226-129F3;0.225114!12227-129F4;0.81677!10508-107D4;0.615262!10539-107G8;0.63748!10607-108F4;0.555409!10555-107I6;0.721956!10774-110F9;0.405692!10637-108I7;0.936299!10663-109C6;0.57926!10728-110A8;0.850087!10729-110A9;0.622308!10430-106D7;0.926765!10730-110B1;0.987382!10813-111B3;0.0461232!10812-111B2;0.725026!10037-101F1;0.262448!10172-103C1;0.182455!10163-103B1;0.0507798!10076-102A4;0.32733!10073-102A1;0.100306!10036-101E9;0.253848!10195-103E6;0.173046!10277-104E7;0.131316!10434-106E2;0.760631!10550-107I1;0.223057!10545-107H5;0.83412!10544-107H4;0.476046!10704-109H2;0.836765!10510-107D6;0.313488!10558-107I9;0.499853!10020-101D2;0.76348!10732-110B3;0.61122!10049-101G4;0.629283!10698-109G5;0.149993!10437-106E5;0.4464!10417-106C3;0.0721144!10035-101E8;0.258722!10171-103B9;0.121509!10157-103A4;0.0667837!10034-101E7;0.190427!10072-101I9;0.141657!10199-103F1;0.324415!10200-103F2;0.919704!10697-109G4;0.794422!10723-110A3;0.375227!10179-103C8;0.433234!10160-103A7;0.337139!10180-103C9;0.258495!10162-103A9;0.0231686!10021-101D3;0.25838!10840-111E3;0.318414!10706-109H4;0.474998!10033-101E6;0.40114!10032-101E5;0.129051!10490-107B4;0.123465!10439-106E7;0.531285!10022-101D4;0.924539!10176-103C5;0.855386!10469-106I1;0.192526!10067-101I4;0.19455!10411-106B6;0.725353!10471-106I3;0.0392922!10030-101E3;0.607148!10475-106I7;0.935737!10787-110H4;0.814885!10477-106I9;0.780844!10695-109G2;0.787552!11771-123I7;0.670289!11772-123I8;0.857025!11773-123I9;0.262157!10093-102C3;0.223003!10442-106F1;0.770804!10442-106F1;0.588952!10201-103F3;0.761151!10639-108I9;0.827809!11843-124H7;0.514374!11841-124H5;0.77908!10693-109F9;0.592715!10436-106E4;0.863607!10483-107A6;0.436587!10282-104F3;0.851279!10023-101D5;0.00368128!10066-101I3;0.00376611!10065-101I2;0.411995!10800-110I8;0.918651!10610-108F7;0.259622!10841-111E4;0.469253!10541-107H1;0.828618!10842-111E5;0.924008!10562-108A4;0.547953!10024-101D6;0.152338!10064-101I1;0.534381!10609-108F6;0.839747!10048-101G3;0.0045112!10781-110G7;0.376022!10181-103D1;0.0298779!10159-103A6;0.587924!10056-101H2;0.882739!10737-110B8;0.434534!10025-101D7;0.790159!10044-101F8;0.512043!10424-106D1;0.640668!10463-106H4;0.427012!10616-108G4;0.345849!10486-107A9;0.891486!10062-101H8;0.9421!10202-103F4;0.526395!10158-103A5;0.879777!10441-106E9;0.851865!10031-101E4;0.597133!10063-101H9;0.167239!10063-101H9;0.238439!11763-123H8;0.604639!11765-123I1;0.451206!11768-123I4;0.730082!10807-111A6;0.899942!10790-110H7;0.679824!10798-110I6;0.887843!10786-110H3;0.954464!10591-108D6;0.930206!10593-108D8;0.820067!10590-108D5;0.750021!10026-101D8;0.927274!10096-102C6;0.718371!10168-103B6;0.618725!10154-103A1;0.260651!10209-103G2;0.608346!10061-101H7;0.610949!10027-101D9;0.859137!10043-101F7;0.765556!10783-110G9;0.950746!10028-101E1;0.0914091!10060-101H6;0.824407!10203-103F5;0.723417!10059-101H5;0.449442!10047-101G2;0.590376!10029-101E2;0.840238!10058-101H4;0.645576!10418-106C4;0.925895!10492-107B6;0.279003!10694-109G1;0.243766!10797-110I5;0.549059!10057-101H3;0.303076!10100-102D1;0.663258!10055-101H1;0.712718!10204-103F6;0.781222!10191-103E2;0.327445!10563-108A5;0.840354
|name=TTCTGCACC,motif618,CNhs11988,T:1281.0(40.87%),B:23036.0(31.12%),P:1e-30
|name=TTCTGCACC,motif618,CNhs11988,T:1281.0(40.87%),B:23036.0(31.12%),P:1e-30
|tomtom_result=REST#MA0138.2;0;0.000685549;0.326321;0.652643;9;TTCTGCACC;TTCAGCACCATGGACAGCGCC;+!AFT1#MA0269.1;5;0.00678837;3.23126;1;9;TTCTGCACC;TTACATATTGCACCCGATTGG;+!PHD1#MA0355.1;0;0.00679526;3.23454;1;9;TTCTGCACC;TGCTGCAGGT;-!DOT6#MA0351.1;0;0.00797479;3.796;1;9;TTCTGCACC;TTCTGCACCTCATCGCATCCT;+!REST#MA0138.2;-1;0.00860232;4.0947;1;8;TTCTGCACC;TCAGCACCATGGACAGCGC;-!RDR1#MA0360.1;1;0.0107335;5.10914;1;7;TTCTGCACC;GTTCCGCA;-!GAL4#MA0299.1;5;0.0158032;7.52231;1;9;TTCTGCACC;GAGTACTGTTCCCCG;-!CHA4#MA0283.1;-1;0.0197163;9.38498;1;8;TTCTGCACC;TCTCCGCC;-
}}
}}

Latest revision as of 12:19, 7 September 2012

Full Name: TTCTGCACC,motif618,CNhs11988,T:1281.0(40.87%),B:23036.0(31.12%),P:1e-30

Motif matrix
POACGT
156.36480.70351.241092.693
274.29897.35681.9841027.362
337.1491052.98279.422111.447
4125.538138.34864.05953.064
5107.604192.15895.41985.827
692.232964.593166.5357.645
7962.031114.00926.901178.059
842.2731008.147122.976107.604
990.9511022.23824.339143.472

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
REST#MA0138.200.0006855490.3263210.6526439TTCTGCACCTTCAGCACCATGGACAGCGCC+
AFT1#MA0269.150.006788373.2312619TTCTGCACCTTACATATTGCACCCGATTGG+
PHD1#MA0355.100.006795263.2345419TTCTGCACCTGCTGCAGGT-
DOT6#MA0351.100.007974793.79619TTCTGCACCTTCTGCACCTCATCGCATCCT+
REST#MA0138.2-10.008602324.094718TTCTGCACCTCAGCACCATGGACAGCGC-
RDR1#MA0360.110.01073355.1091417TTCTGCACCGTTCCGCA-
GAL4#MA0299.150.01580327.5223119TTCTGCACCGAGTACTGTTCCCCG-
CHA4#MA0283.1-10.01971639.3849818TTCTGCACCTCTCCGCC-
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